Wall clock time and date at job start Mon Mar 30 2020 03:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.48532 * 111.00541 * 177.60356 * 12 2 1 14 14 C 1.54936 * 103.22993 * 159.72331 * 13 12 2 15 15 C 1.54597 * 102.92067 * 322.58643 * 14 13 12 16 16 H 1.08999 * 110.39179 * 263.00407 * 15 14 13 17 17 N 1.46897 * 110.30928 * 140.87661 * 15 14 13 18 18 C 1.46896 * 111.00129 * 64.28048 * 17 15 14 19 19 C 1.46901 * 111.00071 * 188.24167 * 17 15 14 20 20 C 1.47899 * 111.00184 * 295.00060 * 12 2 1 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.09008 * 110.66442 * 278.15982 * 13 12 2 26 26 H 1.09005 * 110.66471 * 41.28531 * 13 12 2 27 27 H 1.09001 * 110.72353 * 204.23058 * 14 13 12 28 28 H 1.08999 * 110.87977 * 81.01471 * 14 13 12 29 29 H 1.09003 * 109.46695 * 60.00239 * 18 17 15 30 30 H 1.09002 * 109.47074 * 180.02562 * 18 17 15 31 31 H 1.08997 * 109.47144 * 300.00314 * 18 17 15 32 32 H 1.09003 * 109.47181 * 59.99135 * 19 17 15 33 33 H 1.09000 * 109.47176 * 180.02562 * 19 17 15 34 34 H 1.09007 * 109.46677 * 299.99452 * 19 17 15 35 35 H 1.08997 * 109.91594 * 333.50963 * 20 12 2 36 36 H 1.09010 * 109.91620 * 94.80015 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.5034 -0.7627 1.2050 14 6 3.8408 -1.0123 2.6965 15 6 2.7915 -0.1517 3.4370 16 1 3.2187 0.8115 3.7158 17 7 2.3039 -0.8567 4.6299 18 6 3.3852 -1.0517 5.6049 19 6 1.1707 -0.1449 5.2358 20 6 1.6463 0.0441 2.4263 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 3.8516 -1.5911 0.5879 26 1 3.9344 0.1791 0.8654 27 1 4.8504 -0.6715 2.9258 28 1 3.7239 -2.0659 2.9502 29 1 3.7796 -0.0820 5.9088 30 1 2.9970 -1.5763 6.4780 31 1 4.1815 -1.6418 5.1513 32 1 0.3571 -0.0757 4.5136 33 1 0.8296 -0.6881 6.1171 34 1 1.4849 0.8577 5.5263 35 1 1.5267 1.1038 2.2013 36 1 0.7188 -0.3588 2.8335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062965656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:58 Heat of formation + Delta-G solvation = -5.260402 kcal Electronic energy + Delta-G solvation = -14898.903231 eV Core-core repulsion = 12610.362197 eV Total energy + Delta-G solvation = -2288.541034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37260 -37.53869 -35.15809 -32.70278 -30.06165 -29.16071 -28.03103 -27.04113 -24.50617 -22.81471 -21.55964 -20.49517 -18.48094 -17.32774 -17.14512 -16.19071 -15.67547 -15.27281 -15.07911 -14.81684 -14.41264 -13.74179 -13.47214 -13.27585 -13.12380 -12.94049 -12.81159 -12.65120 -12.39289 -12.24971 -12.13052 -11.91392 -11.74948 -11.65294 -11.60469 -10.89822 -10.53244 -9.26632 -9.00008 -8.11967 -6.24321 1.42246 1.44653 1.52226 2.42407 3.01287 3.16007 3.42702 3.68453 3.90532 4.26025 4.32917 4.46647 4.50178 4.58985 4.67957 4.72091 4.78131 4.85274 4.89166 4.94928 5.00832 5.04782 5.07000 5.10801 5.20874 5.30015 5.45450 5.71114 5.74271 6.12470 6.18745 6.23233 6.36464 6.66309 6.89766 7.45157 8.94305 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055652 B = 0.007585 C = 0.006918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.006202 B = 3690.726375 C = 4046.249495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.209 3.791 3 H -0.037 1.037 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.519 5.519 13 C 0.051 3.949 14 C -0.102 4.102 15 C 0.082 3.918 16 H 0.045 0.955 17 N -0.550 5.550 18 C 0.025 3.975 19 C 0.020 3.980 20 C 0.044 3.956 21 H 0.024 0.976 22 H 0.030 0.970 23 H 0.060 0.940 24 H 0.262 0.738 25 H 0.069 0.931 26 H 0.021 0.979 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -1.846 13.624 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 H -0.020 1.020 4 C -0.560 4.560 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.244 5.244 13 C -0.078 4.078 14 C -0.140 4.140 15 C -0.027 4.027 16 H 0.063 0.937 17 N -0.274 5.274 18 C -0.123 4.123 19 C -0.128 4.128 20 C -0.084 4.084 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.040 0.960 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.786 -2.703 13.333 14.121 hybrid contribution 0.592 1.587 -0.911 1.923 sum 4.378 -1.116 12.422 13.218 Atomic orbital electron populations 1.21587 0.97395 0.99114 0.99488 1.19230 0.92779 0.90068 0.87763 1.01987 1.21377 1.31248 1.12355 0.90985 0.92432 1.25747 0.95310 0.95759 1.02006 1.70013 1.37764 1.24207 1.24173 0.85549 0.78755 0.78668 0.78291 1.19668 1.20837 1.19556 1.64786 1.09739 1.48061 1.01814 1.22945 0.88746 0.99355 0.96732 1.22524 0.97768 1.01025 0.92660 1.22427 0.94545 0.95133 0.90606 0.93691 1.62064 1.09399 1.49343 1.06622 1.22432 0.94007 1.00408 0.95407 1.22473 0.93801 0.96540 0.99937 1.22928 0.99198 0.95129 0.91167 0.95681 0.95116 0.92086 0.92878 0.91304 0.96043 0.89575 0.89866 0.95411 0.90035 0.90936 0.91961 0.89682 0.95422 0.96183 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.95 71.98 0.64 -5.43 16 2 C 0.21 11.16 1.77 44.17 0.08 11.24 16 3 H -0.04 -2.21 7.96 -2.39 -0.02 -2.23 16 4 C -0.52 -29.65 8.06 25.60 0.21 -29.44 16 5 H 0.06 3.24 6.81 -2.91 -0.02 3.22 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -54.25 11.32 21.45 0.24 -54.01 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 N -0.52 -23.58 5.10 -862.24 -4.40 -27.97 16 13 C 0.05 2.03 5.69 86.65 0.49 2.53 16 14 C -0.10 -3.09 5.60 31.80 0.18 -2.92 16 15 C 0.08 2.51 2.73 45.79 0.12 2.64 16 16 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 17 N -0.55 -14.50 4.82 -918.07 -4.42 -18.92 16 18 C 0.03 0.50 9.38 127.69 1.20 1.70 16 19 C 0.02 0.47 9.22 127.69 1.18 1.64 16 20 C 0.04 1.69 4.75 86.45 0.41 2.10 16 21 H 0.02 1.14 7.35 -2.39 -0.02 1.12 16 22 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 3.43 6.07 -2.38 -0.01 3.41 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.07 2.86 7.32 -2.38 -0.02 2.84 16 26 H 0.02 0.91 8.02 -2.38 -0.02 0.89 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.08 2.52 7.91 -2.39 -0.02 2.50 16 29 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 31 H 0.07 1.39 7.17 -2.39 -0.02 1.38 16 32 H 0.06 1.58 6.08 -2.39 -0.01 1.57 16 33 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 34 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.02 0.81 7.65 -2.39 -0.02 0.79 16 36 H 0.08 2.98 6.03 -2.38 -0.01 2.96 16 Total: -1.00 -62.49 277.19 -0.57 -63.06 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.02 Total: 6.31 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 4.96 Total: -14.91 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -8.58 Total: -100.90 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -62.49 -0.57 -63.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062965656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.796 kcal (2) G-P(sol) polarization free energy of solvation -62.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds