Wall clock time and date at job start Mon Mar 30 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46758 * 2 1 4 4 C 1.50691 * 109.46989 * 120.00102 * 2 1 3 5 5 H 1.08000 * 120.00366 * 119.99815 * 4 2 1 6 6 C 1.37875 * 120.00104 * 300.27485 * 4 2 1 7 7 N 1.31509 * 120.00368 * 359.72394 * 6 4 2 8 8 Si 1.86805 * 120.00181 * 179.72570 * 6 4 2 9 9 H 1.48506 * 109.47049 * 89.99756 * 8 6 4 10 10 H 1.48493 * 109.47225 * 210.00022 * 8 6 4 11 11 H 1.48503 * 109.46906 * 329.99967 * 8 6 4 12 12 N 1.46898 * 109.46674 * 240.00208 * 2 1 3 13 13 C 1.46898 * 111.00315 * 308.77167 * 12 2 1 14 14 C 1.46900 * 111.00407 * 72.72812 * 12 2 1 15 15 H 1.09002 * 110.43307 * 312.54356 * 14 12 2 16 16 C 1.54888 * 110.48953 * 190.00128 * 14 12 2 17 17 C 1.54883 * 102.74694 * 203.37950 * 16 14 12 18 18 C 1.54263 * 104.20037 * 37.94357 * 17 16 14 19 19 C 1.53878 * 106.59844 * 336.38610 * 18 17 16 20 20 H 1.08994 * 110.03618 * 240.72063 * 19 18 17 21 21 N 1.46898 * 110.03300 * 119.28491 * 19 18 17 22 22 H 1.08996 * 109.47397 * 187.58522 * 1 2 3 23 23 H 1.08998 * 109.47229 * 307.58404 * 1 2 3 24 24 H 1.09005 * 109.47138 * 67.58059 * 1 2 3 25 25 H 0.97001 * 120.00512 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.47179 * 66.31904 * 13 12 2 27 27 H 1.08992 * 109.47539 * 186.32526 * 13 12 2 28 28 H 1.09002 * 109.47069 * 306.32752 * 13 12 2 29 29 H 1.09006 * 110.75128 * 321.69267 * 16 14 12 30 30 H 1.08996 * 110.75713 * 85.05969 * 16 14 12 31 31 H 1.09010 * 110.48819 * 156.62090 * 17 16 14 32 32 H 1.09002 * 110.48722 * 279.25970 * 17 16 14 33 33 H 1.08997 * 110.03690 * 95.67529 * 18 17 16 34 34 H 1.09004 * 110.03136 * 217.05650 * 18 17 16 35 35 H 1.00903 * 110.99959 * 60.88226 * 21 19 18 36 36 H 1.00894 * 111.00166 * 184.83994 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6945 -0.2427 2.4826 7 7 0.9385 0.8266 2.6034 8 14 2.3109 -1.1278 4.0079 9 1 3.6178 -0.5545 4.4187 10 1 1.3285 -0.9596 5.1087 11 1 2.4764 -2.5729 3.7086 12 7 2.0196 -0.6925 -1.1995 13 6 1.3854 -2.0097 -1.3427 14 6 1.8112 0.1256 -2.4017 15 1 0.7955 0.5207 -2.4217 16 6 2.0953 -0.7043 -3.6782 17 6 2.4272 0.3855 -4.7275 18 6 3.2327 1.4380 -3.9381 19 6 2.8410 1.2729 -2.4592 20 1 2.3944 2.1945 -2.0861 21 7 4.0245 0.9272 -1.6607 22 1 -0.3634 -1.0186 0.1356 23 1 -0.3633 0.6268 0.8144 24 1 -0.3634 0.3920 -0.9500 25 1 0.7012 1.1558 3.4844 26 1 0.3210 -1.8811 -1.5390 27 1 1.8456 -2.5463 -2.1722 28 1 1.5189 -2.5792 -0.4229 29 1 2.9475 -1.3668 -3.5264 30 1 1.2126 -1.2705 -3.9752 31 1 3.0316 -0.0319 -5.5330 32 1 1.5118 0.8244 -5.1243 33 1 4.3010 1.2617 -4.0634 34 1 2.9769 2.4398 -4.2833 35 1 4.7217 1.6546 -1.7140 36 1 3.7716 0.7383 -0.7025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:39 Heat of formation + Delta-G solvation = 2.766375 kcal Electronic energy + Delta-G solvation = -15305.331834 eV Core-core repulsion = 13017.138867 eV Total energy + Delta-G solvation = -2288.192967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80334 -35.52807 -32.53125 -31.89949 -28.93105 -26.95001 -26.21617 -25.19938 -23.96304 -20.22332 -19.97296 -18.06147 -16.21076 -15.96356 -15.04069 -14.77250 -14.53468 -13.79539 -13.45453 -12.91266 -12.56729 -12.38453 -11.85453 -11.39293 -11.18567 -11.05759 -10.99221 -10.77122 -10.58321 -10.50616 -10.33152 -10.26172 -10.10129 -10.02176 -9.59758 -8.86140 -8.37339 -7.82096 -6.98740 -5.99818 -4.02631 3.32400 3.38873 3.42957 4.42838 4.93701 5.01193 5.03865 5.32198 5.40827 5.51838 5.85385 5.89589 5.93885 6.00757 6.20572 6.21535 6.30998 6.36617 6.40586 6.54872 6.61815 6.71375 6.74437 6.84848 6.92546 7.15881 7.49597 7.72160 7.86897 7.97277 8.22560 8.36723 8.42483 8.68201 9.05522 9.62874 11.07578 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045300 B = 0.009084 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.950015 B = 3081.747161 C = 3215.863705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.209 3.791 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.514 5.514 13 C 0.037 3.963 14 C 0.082 3.918 15 H 0.037 0.963 16 C -0.111 4.111 17 C -0.120 4.120 18 C -0.117 4.117 19 C 0.100 3.900 20 H 0.022 0.978 21 N -0.828 5.828 22 H 0.033 0.967 23 H 0.081 0.919 24 H 0.004 0.996 25 H 0.259 0.741 26 H 0.010 0.990 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.318 0.682 36 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 0.050 -10.096 10.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.238 5.238 13 C -0.111 4.111 14 C -0.028 4.028 15 H 0.055 0.945 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.013 4.013 20 H 0.040 0.960 21 N -0.361 5.361 22 H 0.052 0.948 23 H 0.100 0.900 24 H 0.023 0.977 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.242 -0.544 -10.355 10.609 hybrid contribution -0.995 0.678 1.403 1.849 sum 1.247 0.134 -8.952 9.040 Atomic orbital electron populations 1.22372 1.01053 1.00525 0.98755 1.19310 0.89648 0.94138 0.86690 0.94962 1.21121 1.30262 1.12567 0.89460 0.91789 1.24943 0.95243 0.95181 0.99018 1.69907 1.37142 1.23247 1.23301 0.86528 0.78388 0.80099 0.82542 1.20761 1.21536 1.19951 1.62293 1.57387 1.02443 1.01653 1.22195 0.95287 0.92438 1.01221 1.22479 0.95419 0.93682 0.91204 0.94482 1.22530 1.00993 0.97350 0.94025 1.22247 0.99263 0.96718 0.97603 1.22223 1.00674 0.97910 0.94735 1.21769 0.91590 0.95099 0.92819 0.95972 1.58718 1.11395 1.46919 1.19116 0.94810 0.90011 0.97664 0.93130 0.97147 0.93600 0.91136 0.90298 0.92786 0.92128 0.92409 0.91062 0.92841 0.87127 0.81559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 7.88 37.16 0.29 -3.80 16 2 C 0.21 5.12 1.37 -68.87 -0.09 5.03 16 3 H 0.03 0.87 6.71 -51.93 -0.35 0.52 16 4 C -0.50 -13.29 7.90 -34.45 -0.27 -13.57 16 5 H 0.06 1.75 7.33 -52.49 -0.38 1.36 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.31 11.40 55.43 0.63 -24.68 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.51 -10.94 3.49 -226.31 -0.79 -11.73 16 13 C 0.04 0.74 8.02 60.06 0.48 1.22 16 14 C 0.08 1.53 2.47 -66.05 -0.16 1.37 16 15 H 0.04 0.74 6.38 -51.93 -0.33 0.41 16 16 C -0.11 -1.75 4.83 -24.74 -0.12 -1.87 16 17 C -0.12 -1.61 6.83 -25.08 -0.17 -1.78 16 18 C -0.12 -1.67 6.58 -25.61 -0.17 -1.84 16 19 C 0.10 1.75 3.33 -66.59 -0.22 1.53 16 20 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 21 N -0.83 -15.06 8.79 -3.72 -0.03 -15.09 16 22 H 0.03 0.81 6.92 -51.93 -0.36 0.45 16 23 H 0.08 2.19 6.30 -51.93 -0.33 1.86 16 24 H 0.00 0.10 6.44 -51.93 -0.33 -0.23 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.01 0.20 6.77 -51.93 -0.35 -0.15 16 27 H 0.05 0.81 6.64 -51.93 -0.34 0.46 16 28 H 0.07 1.51 6.91 -51.93 -0.36 1.15 16 29 H 0.08 1.33 7.70 -51.93 -0.40 0.93 16 30 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 31 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.32 5.00 9.06 -39.29 -0.36 4.65 16 36 H 0.37 7.74 6.45 -39.30 -0.25 7.48 16 LS Contribution 269.52 15.07 4.06 4.06 Total: -1.00 -27.34 269.52 -7.49 -34.82 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.81 Total: 8.57 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -0.53 Total: -12.25 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.19 Total: -51.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.34 -7.49 -34.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.591 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds