Wall clock time and date at job start Mon Mar 30 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46758 * 2 1 4 4 C 1.50691 * 109.46989 * 120.00102 * 2 1 3 5 5 H 1.08000 * 120.00366 * 119.99815 * 4 2 1 6 6 C 1.37875 * 120.00104 * 300.27485 * 4 2 1 7 7 N 1.31509 * 120.00368 * 359.72394 * 6 4 2 8 8 Si 1.86805 * 120.00181 * 179.72570 * 6 4 2 9 9 H 1.48506 * 109.47049 * 89.99756 * 8 6 4 10 10 H 1.48493 * 109.47225 * 210.00022 * 8 6 4 11 11 H 1.48503 * 109.46906 * 329.99967 * 8 6 4 12 12 N 1.46898 * 109.46674 * 240.00208 * 2 1 3 13 13 C 1.46898 * 111.00315 * 308.77167 * 12 2 1 14 14 C 1.46900 * 111.00407 * 72.72812 * 12 2 1 15 15 H 1.09002 * 110.43307 * 312.54356 * 14 12 2 16 16 C 1.54888 * 110.48953 * 190.00128 * 14 12 2 17 17 C 1.54883 * 102.74694 * 203.37950 * 16 14 12 18 18 C 1.54263 * 104.20037 * 37.94357 * 17 16 14 19 19 C 1.53878 * 106.59844 * 336.38610 * 18 17 16 20 20 H 1.08994 * 110.03618 * 240.72063 * 19 18 17 21 21 N 1.46898 * 110.03300 * 119.28491 * 19 18 17 22 22 H 1.08996 * 109.47397 * 187.58522 * 1 2 3 23 23 H 1.08998 * 109.47229 * 307.58404 * 1 2 3 24 24 H 1.09005 * 109.47138 * 67.58059 * 1 2 3 25 25 H 0.97001 * 120.00512 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.47179 * 66.31904 * 13 12 2 27 27 H 1.08992 * 109.47539 * 186.32526 * 13 12 2 28 28 H 1.09002 * 109.47069 * 306.32752 * 13 12 2 29 29 H 1.09006 * 110.75128 * 321.69267 * 16 14 12 30 30 H 1.08996 * 110.75713 * 85.05969 * 16 14 12 31 31 H 1.09010 * 110.48819 * 156.62090 * 17 16 14 32 32 H 1.09002 * 110.48722 * 279.25970 * 17 16 14 33 33 H 1.08997 * 110.03690 * 95.67529 * 18 17 16 34 34 H 1.09004 * 110.03136 * 217.05650 * 18 17 16 35 35 H 1.00903 * 110.99959 * 60.88226 * 21 19 18 36 36 H 1.00894 * 111.00166 * 184.83994 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6945 -0.2427 2.4826 7 7 0.9385 0.8266 2.6034 8 14 2.3109 -1.1278 4.0079 9 1 3.6178 -0.5545 4.4187 10 1 1.3285 -0.9596 5.1087 11 1 2.4764 -2.5729 3.7086 12 7 2.0196 -0.6925 -1.1995 13 6 1.3854 -2.0097 -1.3427 14 6 1.8112 0.1256 -2.4017 15 1 0.7955 0.5207 -2.4217 16 6 2.0953 -0.7043 -3.6782 17 6 2.4272 0.3855 -4.7275 18 6 3.2327 1.4380 -3.9381 19 6 2.8410 1.2729 -2.4592 20 1 2.3944 2.1945 -2.0861 21 7 4.0245 0.9272 -1.6607 22 1 -0.3634 -1.0186 0.1356 23 1 -0.3633 0.6268 0.8144 24 1 -0.3634 0.3920 -0.9500 25 1 0.7012 1.1558 3.4844 26 1 0.3210 -1.8811 -1.5390 27 1 1.8456 -2.5463 -2.1722 28 1 1.5189 -2.5792 -0.4229 29 1 2.9475 -1.3668 -3.5264 30 1 1.2126 -1.2705 -3.9752 31 1 3.0316 -0.0319 -5.5330 32 1 1.5118 0.8244 -5.1243 33 1 4.3010 1.2617 -4.0634 34 1 2.9769 2.4398 -4.2833 35 1 4.7217 1.6546 -1.7140 36 1 3.7716 0.7383 -0.7025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:39 Heat of formation + Delta-G solvation = -15.483277 kcal Electronic energy + Delta-G solvation = -15306.123198 eV Core-core repulsion = 13017.138867 eV Total energy + Delta-G solvation = -2288.984331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29248 -37.16112 -34.47516 -33.28739 -30.74916 -28.42570 -27.60307 -27.24617 -25.59483 -21.99672 -21.20013 -19.61136 -18.21974 -17.45580 -16.70779 -16.45585 -15.94645 -15.51065 -14.83602 -14.55738 -14.19294 -14.10209 -13.56697 -13.10977 -12.95505 -12.76433 -12.57946 -12.28022 -12.16007 -12.13648 -12.06593 -11.77940 -11.61609 -11.36162 -11.29414 -10.86865 -10.47121 -9.28462 -8.70464 -8.08804 -6.18102 1.43095 1.44256 1.54224 2.44456 3.20762 3.38961 3.73616 3.79021 4.02380 4.28616 4.49984 4.56615 4.58836 4.64776 4.75991 4.81933 4.84419 4.88812 5.03696 5.10736 5.14104 5.20443 5.21616 5.23785 5.32065 5.52993 5.57595 5.71117 5.83965 6.23590 6.49918 6.55937 6.84449 6.91143 6.97241 7.51477 8.97391 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045300 B = 0.009084 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.950015 B = 3081.747161 C = 3215.863705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.219 3.781 3 H 0.006 0.994 4 C -0.505 4.505 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.519 5.519 13 C 0.041 3.959 14 C 0.073 3.927 15 H 0.024 0.976 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.110 4.110 19 C 0.095 3.905 20 H 0.004 0.996 21 N -0.829 5.829 22 H 0.030 0.970 23 H 0.055 0.945 24 H 0.019 0.981 25 H 0.259 0.741 26 H 0.011 0.989 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.331 0.669 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 -0.529 -11.540 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.111 3.889 3 H 0.023 0.977 4 C -0.543 4.543 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.242 5.242 13 C -0.108 4.108 14 C -0.036 4.036 15 H 0.041 0.959 16 C -0.142 4.142 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.018 4.018 20 H 0.022 0.978 21 N -0.361 5.361 22 H 0.049 0.951 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.819 -1.122 -11.831 12.214 hybrid contribution -1.168 0.876 1.821 2.334 sum 1.651 -0.246 -10.010 10.148 Atomic orbital electron populations 1.22195 1.01091 0.99658 0.98438 1.19019 0.89349 0.92775 0.87741 0.97667 1.21333 1.30027 1.12311 0.90651 0.92595 1.25658 0.95471 0.95849 1.01731 1.70031 1.38092 1.24399 1.23792 0.85576 0.77850 0.79124 0.79151 1.20332 1.21344 1.19482 1.62217 1.57309 1.02999 1.01645 1.22181 0.95539 0.91766 1.01268 1.22638 0.95102 0.94427 0.91447 0.95865 1.22478 1.01136 0.97640 0.92978 1.22248 1.00101 0.95454 0.97243 1.22181 1.01136 0.99388 0.92106 1.21888 0.91126 0.93797 0.94971 0.97845 1.58738 1.11976 1.47632 1.17791 0.95137 0.92640 0.96185 0.93198 0.97060 0.90956 0.93041 0.91121 0.91626 0.89830 0.91096 0.90566 0.91118 0.85712 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.64 7.88 71.98 0.57 -7.07 16 2 C 0.22 10.93 1.37 44.17 0.06 10.99 16 3 H 0.01 0.30 6.71 -2.39 -0.02 0.29 16 4 C -0.50 -27.45 7.90 25.60 0.20 -27.25 16 5 H 0.06 3.08 7.33 -2.91 -0.02 3.06 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -53.02 11.40 21.45 0.24 -52.77 16 8 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.52 -21.94 3.49 -869.92 -3.04 -24.98 16 13 C 0.04 1.59 8.02 127.69 1.02 2.61 16 14 C 0.07 2.67 2.47 45.99 0.11 2.78 16 15 H 0.02 0.92 6.38 -2.39 -0.02 0.90 16 16 C -0.10 -3.02 4.83 31.88 0.15 -2.87 16 17 C -0.11 -2.61 6.83 31.67 0.22 -2.39 16 18 C -0.11 -2.83 6.58 31.32 0.21 -2.63 16 19 C 0.09 3.24 3.33 45.64 0.15 3.39 16 20 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 21 N -0.83 -29.85 8.79 -165.67 -1.46 -31.31 16 22 H 0.03 1.47 6.92 -2.39 -0.02 1.46 16 23 H 0.05 3.03 6.30 -2.39 -0.02 3.02 16 24 H 0.02 0.88 6.44 -2.38 -0.02 0.87 16 25 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.01 0.42 6.77 -2.39 -0.02 0.41 16 27 H 0.07 2.41 6.64 -2.39 -0.02 2.40 16 28 H 0.05 2.18 6.91 -2.39 -0.02 2.16 16 29 H 0.07 2.18 7.70 -2.38 -0.02 2.16 16 30 H 0.07 1.74 8.06 -2.39 -0.02 1.72 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.91 7.92 -2.39 -0.02 1.89 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.33 10.21 9.06 -89.69 -0.81 9.40 16 36 H 0.35 14.93 6.45 -89.70 -0.58 14.35 16 Total: -1.00 -58.29 269.52 0.60 -57.69 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -0.32 Total: 26.75 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 3.14 Total: -21.37 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -4.25 Total: -109.06 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -58.29 0.60 -57.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.210 kcal (2) G-P(sol) polarization free energy of solvation -58.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds