Wall clock time and date at job start Mon Mar 30 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46904 * 2 1 4 4 C 1.50694 * 109.47432 * 239.99872 * 2 1 3 5 5 H 1.07998 * 120.00499 * 266.53231 * 4 2 1 6 6 C 1.37879 * 119.99720 * 86.52737 * 4 2 1 7 7 N 1.31519 * 119.99835 * 185.09799 * 6 4 2 8 8 Si 1.86802 * 120.00285 * 5.09932 * 6 4 2 9 9 H 1.48493 * 109.47134 * 93.96915 * 8 6 4 10 10 H 1.48501 * 109.47112 * 213.97397 * 8 6 4 11 11 H 1.48500 * 109.46854 * 333.97106 * 8 6 4 12 12 N 1.46901 * 109.46989 * 119.99852 * 2 1 3 13 13 C 1.46894 * 110.99960 * 176.04847 * 12 2 1 14 14 C 1.46898 * 110.99943 * 300.00116 * 12 2 1 15 15 H 1.09001 * 110.05602 * 45.90601 * 14 12 2 16 16 C 1.54260 * 110.03520 * 284.48326 * 14 12 2 17 17 C 1.54894 * 104.19784 * 217.10646 * 16 14 12 18 18 C 1.54886 * 102.74859 * 37.94363 * 17 16 14 19 19 C 1.53878 * 110.03259 * 167.31718 * 14 12 2 20 20 H 1.08998 * 110.03516 * 238.57398 * 19 14 12 21 21 N 1.46907 * 110.03154 * 359.95335 * 19 14 12 22 22 H 1.08999 * 109.47448 * 306.62294 * 1 2 3 23 23 H 1.09000 * 109.47381 * 66.62270 * 1 2 3 24 24 H 1.09003 * 109.47384 * 186.62293 * 1 2 3 25 25 H 0.96999 * 119.99900 * 179.97438 * 7 6 4 26 26 H 1.09008 * 109.47339 * 174.41601 * 13 12 2 27 27 H 1.09001 * 109.47218 * 294.41282 * 13 12 2 28 28 H 1.09001 * 109.47439 * 54.41657 * 13 12 2 29 29 H 1.08999 * 110.48719 * 335.78711 * 16 14 12 30 30 H 1.09000 * 110.48645 * 98.43096 * 16 14 12 31 31 H 1.09004 * 110.75184 * 156.25737 * 17 16 14 32 32 H 1.08995 * 110.75465 * 279.62423 * 17 16 14 33 33 H 1.09000 * 110.48844 * 203.37927 * 18 17 16 34 34 H 1.09006 * 110.59904 * 80.78769 * 18 17 16 35 35 H 1.00895 * 111.00104 * 179.97438 * 21 19 14 36 36 H 1.00900 * 110.99727 * 303.95302 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2657 -1.7640 -1.1882 6 6 2.1940 -0.0152 -2.4101 7 7 2.5358 -0.6536 -3.5080 8 14 1.9276 1.8333 -2.4490 9 1 3.2266 2.5249 -2.2508 10 1 1.3543 2.2233 -3.7622 11 1 0.9898 2.2211 -1.3648 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4211 15 1 0.4862 0.2024 2.3362 16 6 2.3508 1.2696 2.6593 17 6 2.5186 1.3351 4.1977 18 6 2.7424 -0.1489 4.5806 19 6 1.7975 -0.9282 3.6427 20 1 0.8560 -1.1372 4.1507 21 7 2.4304 -2.1847 3.2200 22 1 -0.3634 0.6130 0.8248 23 1 -0.3634 0.4078 -0.9433 24 1 -0.3634 -1.0208 0.1185 25 1 2.6491 -0.1646 -4.3380 26 1 3.8275 -1.2213 2.1298 27 1 3.7976 -1.4358 0.3631 28 1 3.9172 0.1980 1.0594 29 1 3.3238 1.2110 2.1715 30 1 1.7939 2.1346 2.2991 31 1 3.3858 1.9384 4.4662 32 1 1.6156 1.7237 4.6685 33 1 2.4713 -0.3190 5.6226 34 1 3.7785 -0.4383 4.4047 35 1 2.6009 -2.7877 4.0108 36 1 1.8732 -2.6530 2.5212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:41 Heat of formation + Delta-G solvation = -5.186061 kcal Electronic energy + Delta-G solvation = -15396.141224 eV Core-core repulsion = 13107.603414 eV Total energy + Delta-G solvation = -2288.537810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53663 -36.88591 -34.30406 -33.42825 -31.62394 -29.02512 -27.49880 -26.69964 -25.10254 -22.25932 -21.22866 -19.44220 -18.96162 -17.64421 -16.52542 -16.04802 -15.88480 -15.66684 -15.14418 -14.69140 -14.53173 -14.19440 -13.82728 -13.07962 -12.85439 -12.72776 -12.48217 -12.32238 -12.15249 -12.00210 -11.89958 -11.86932 -11.71623 -11.45830 -11.24844 -10.93910 -10.72178 -9.17188 -8.68868 -8.26312 -6.26728 1.29052 1.31640 1.42282 2.33363 3.07217 3.36193 3.71908 3.82791 3.99820 4.20807 4.49975 4.55025 4.60123 4.65813 4.68856 4.81871 4.84299 4.89401 4.97444 5.06216 5.10811 5.19093 5.22306 5.26647 5.42124 5.50259 5.53110 5.63398 5.75867 6.15241 6.49408 6.57113 6.82382 6.86110 6.96713 7.39165 8.90812 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041595 B = 0.010292 C = 0.009490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.998012 B = 2719.795142 C = 2949.715121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.179 3.821 3 H -0.010 1.010 4 C -0.491 4.491 5 H 0.036 0.964 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.931 3.069 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.243 1.243 12 N -0.513 5.513 13 C 0.050 3.950 14 C 0.069 3.931 15 H 0.076 0.924 16 C -0.166 4.166 17 C -0.110 4.110 18 C -0.112 4.112 19 C 0.099 3.901 20 H 0.044 0.956 21 N -0.834 5.834 22 H 0.049 0.951 23 H 0.035 0.965 24 H 0.050 0.950 25 H 0.263 0.737 26 H 0.111 0.889 27 H 0.028 0.972 28 H -0.009 1.009 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.339 0.661 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 3.467 17.219 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 H 0.008 0.992 4 C -0.530 4.530 5 H 0.054 0.946 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.756 3.244 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.166 1.166 12 N -0.236 5.236 13 C -0.098 4.098 14 C -0.041 4.041 15 H 0.094 0.906 16 C -0.205 4.205 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.013 4.013 20 H 0.062 0.938 21 N -0.366 5.366 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.047 0.953 28 H 0.010 0.990 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.567 3.446 16.771 17.193 hybrid contribution -0.459 0.997 -0.684 1.293 sum -2.025 4.443 16.086 16.811 Atomic orbital electron populations 1.21906 0.96817 1.00642 0.99201 1.19616 0.92898 0.91424 0.88975 0.99215 1.21104 1.42009 0.96189 0.93673 0.94598 1.25761 0.95038 1.02538 0.95184 1.70053 1.50737 1.37680 1.00554 0.85984 0.79150 0.81229 0.78085 1.20395 1.21050 1.16620 1.61938 1.10726 1.50462 1.00482 1.22363 0.87579 0.97047 1.02839 1.22639 0.98650 0.92028 0.90735 0.90620 1.23100 1.00820 0.98225 0.98366 1.22336 1.02158 0.96818 0.93511 1.22435 0.99724 0.94218 0.98631 1.21922 0.95504 0.90704 0.93202 0.93826 1.58772 1.54010 1.07486 1.16309 0.93200 0.94594 0.93067 0.92762 0.87066 0.95314 0.99049 0.92226 0.93012 0.90928 0.90377 0.90051 0.91401 0.84818 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.41 71.98 0.61 -4.80 16 2 C 0.18 8.45 1.45 44.17 0.06 8.51 16 3 H -0.01 -0.47 5.16 -2.39 -0.01 -0.48 16 4 C -0.49 -28.34 7.70 25.60 0.20 -28.14 16 5 H 0.04 2.34 7.78 -2.91 -0.02 2.31 16 6 C 0.01 0.68 5.47 84.65 0.46 1.14 16 7 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 8 Si 0.93 45.30 26.43 68.60 1.81 47.11 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.24 -10.93 6.10 99.48 0.61 -10.32 16 12 N -0.51 -20.75 3.51 -871.97 -3.06 -23.81 16 13 C 0.05 2.06 7.73 127.69 0.99 3.05 16 14 C 0.07 2.21 2.77 45.64 0.13 2.34 16 15 H 0.08 2.44 5.86 -2.39 -0.01 2.42 16 16 C -0.17 -5.02 5.60 31.67 0.18 -4.85 16 17 C -0.11 -2.42 6.91 31.89 0.22 -2.20 16 18 C -0.11 -2.38 6.51 31.67 0.21 -2.17 16 19 C 0.10 2.50 3.71 45.64 0.17 2.67 16 20 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 21 N -0.83 -21.64 6.07 -165.66 -1.00 -22.65 16 22 H 0.05 1.79 6.48 -2.39 -0.02 1.78 16 23 H 0.03 1.57 7.15 -2.39 -0.02 1.55 16 24 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 26 H 0.11 4.00 5.58 -2.38 -0.01 3.99 16 27 H 0.03 1.37 7.02 -2.39 -0.02 1.35 16 28 H -0.01 -0.38 6.14 -2.39 -0.01 -0.39 16 29 H 0.06 2.06 5.23 -2.39 -0.01 2.05 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.44 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.57 8.05 -2.38 -0.02 1.55 16 35 H 0.34 6.88 9.07 -89.70 -0.81 6.06 16 36 H 0.35 10.35 8.28 -89.69 -0.74 9.61 16 Total: -1.00 -64.66 265.52 0.69 -63.97 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.58 Total: 19.79 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 3.22 Total: -24.44 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.76 Total: -106.43 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.81 Total: 47.11 kcal Total: -64.66 0.69 -63.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.788 kcal (2) G-P(sol) polarization free energy of solvation -64.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds