Wall clock time and date at job start Mon Mar 30 2020 03:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47360 * 2 1 4 4 C 1.50700 * 109.47099 * 119.99555 * 2 1 3 5 5 H 1.08004 * 119.99534 * 114.52384 * 4 2 1 6 6 C 1.37878 * 120.00180 * 294.53219 * 4 2 1 7 7 N 1.31510 * 119.99760 * 160.59098 * 6 4 2 8 8 Si 1.86796 * 119.99790 * 340.86338 * 6 4 2 9 9 H 1.48503 * 109.47098 * 179.72449 * 8 6 4 10 10 H 1.48500 * 109.47352 * 299.72696 * 8 6 4 11 11 H 1.48505 * 109.47038 * 59.73082 * 8 6 4 12 12 N 1.46904 * 109.47316 * 239.99805 * 2 1 3 13 13 C 1.46904 * 110.99924 * 306.04685 * 12 2 1 14 14 C 1.46902 * 110.99898 * 70.00014 * 12 2 1 15 15 C 1.52998 * 109.46896 * 170.00103 * 14 12 2 16 16 N 1.46902 * 109.46896 * 179.97438 * 15 14 12 17 17 C 1.46903 * 110.99860 * 179.97438 * 16 15 14 18 18 C 1.52996 * 117.50078 * 223.74491 * 17 16 15 19 19 C 1.52996 * 117.49680 * 155.08707 * 17 16 15 20 20 H 1.08999 * 109.47202 * 185.12903 * 1 2 3 21 21 H 1.08997 * 109.47409 * 305.13470 * 1 2 3 22 22 H 1.09008 * 109.46955 * 65.13628 * 1 2 3 23 23 H 0.96996 * 120.00673 * 2.37574 * 7 6 4 24 24 H 1.08999 * 109.46999 * 60.00038 * 13 12 2 25 25 H 1.09002 * 109.46820 * 179.97438 * 13 12 2 26 26 H 1.08994 * 109.46697 * 300.00039 * 13 12 2 27 27 H 1.09001 * 109.47107 * 289.99958 * 14 12 2 28 28 H 1.09005 * 109.47054 * 50.00236 * 14 12 2 29 29 H 1.09001 * 109.47124 * 299.99845 * 15 14 12 30 30 H 1.08996 * 109.47358 * 60.00096 * 15 14 12 31 31 H 1.00892 * 111.00209 * 303.95366 * 16 15 14 32 32 H 1.08998 * 115.55073 * 9.42058 * 17 16 15 33 33 H 1.09002 * 117.49883 * 0.02562 * 18 17 16 34 34 H 1.09001 * 117.50081 * 145.02199 * 18 17 16 35 35 H 1.09007 * 117.49589 * 214.98359 * 19 17 16 36 36 H 1.09001 * 117.50446 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5783 -1.6371 1.1339 6 6 1.7947 -0.1771 2.4796 7 7 1.8771 -0.9408 3.5471 8 14 1.3483 1.6282 2.6550 9 1 1.1380 1.9491 4.0896 10 1 2.4506 2.4653 2.1169 11 1 0.1012 1.9055 1.8979 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0356 -1.3078 14 6 1.7530 0.0972 -2.4091 15 6 2.4885 -0.5258 -3.5972 16 7 2.2213 0.2636 -4.8070 17 6 2.9136 -0.3060 -5.9708 18 6 3.6269 0.6652 -6.9135 19 6 2.3278 -0.0141 -7.3537 20 1 -0.3633 -1.0235 0.0919 21 1 -0.3634 0.5914 0.8404 22 1 -0.3633 0.4321 -0.9325 23 1 2.1387 -1.8707 3.4592 24 1 0.3491 -1.9550 -1.3693 25 1 1.8134 -2.5258 -2.2045 26 1 1.7059 -2.6221 -0.4301 27 1 0.6814 0.1052 -2.6088 28 1 2.1026 1.1189 -2.2604 29 1 3.5601 -0.5338 -3.3975 30 1 2.1390 -1.5474 -3.7459 31 1 1.2298 0.3398 -4.9773 32 1 3.3712 -1.2827 -5.8140 33 1 3.5829 1.7268 -6.6700 34 1 4.5537 0.3273 -7.3772 35 1 2.4004 -0.7989 -8.1068 36 1 1.4286 0.6001 -7.4001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:34 Heat of formation + Delta-G solvation = 33.071649 kcal Electronic energy + Delta-G solvation = -14298.329011 eV Core-core repulsion = 12011.450180 eV Total energy + Delta-G solvation = -2286.878831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.21700 -37.24403 -33.85745 -32.34950 -29.65943 -27.38345 -25.12936 -24.44234 -22.52282 -21.26562 -21.08759 -19.00767 -17.28098 -16.25334 -15.68858 -15.02418 -14.79868 -13.98287 -13.68079 -13.35605 -13.08807 -12.61807 -12.21787 -11.84110 -11.64852 -11.54785 -11.37077 -11.12060 -10.98233 -10.72463 -10.48654 -10.39219 -10.17887 -9.80453 -9.69260 -8.91919 -8.30513 -8.12678 -7.31582 -6.42503 -3.98843 3.39638 3.46830 3.62836 3.70268 3.92248 4.52577 4.79722 4.86446 4.96827 5.11585 5.29971 5.43171 5.46460 5.48939 5.59229 5.80338 5.86155 6.03298 6.03729 6.18047 6.27187 6.35269 6.38187 6.46268 6.67265 6.72151 6.97864 7.06912 7.28715 7.32956 7.77660 8.06761 8.35656 8.48663 9.02405 9.67353 10.98346 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055485 B = 0.005962 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.516328 B = 4694.968107 C = 4877.982983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.188 3.812 3 H 0.031 0.969 4 C -0.586 4.586 5 H 0.063 0.937 6 C 0.030 3.970 7 N -0.907 5.907 8 Si 1.043 2.957 9 H -0.286 1.286 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.525 5.525 13 C 0.033 3.967 14 C 0.053 3.947 15 C 0.066 3.934 16 N -0.661 5.661 17 C 0.020 3.980 18 C -0.170 4.170 19 C -0.197 4.197 20 H 0.049 0.951 21 H 0.057 0.943 22 H 0.021 0.979 23 H 0.267 0.733 24 H 0.017 0.983 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.030 0.970 31 H 0.339 0.661 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 1.687 -17.430 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.080 3.920 3 H 0.049 0.951 4 C -0.625 4.625 5 H 0.081 0.919 6 C -0.175 4.175 7 N -0.541 5.541 8 Si 0.872 3.128 9 H -0.212 1.212 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.248 5.248 13 C -0.115 4.115 14 C -0.076 4.076 15 C -0.063 4.063 16 N -0.292 5.292 17 C -0.091 4.091 18 C -0.209 4.209 19 C -0.235 4.235 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.158 0.842 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.323 3.246 -16.095 16.422 hybrid contribution -1.035 -1.897 -1.415 2.583 sum -1.358 1.349 -17.509 17.614 Atomic orbital electron populations 1.22859 1.01411 1.01054 0.99118 1.19637 0.89135 0.94628 0.88603 0.95138 1.21916 1.39748 1.10491 0.90297 0.91916 1.25666 0.94512 1.05187 0.92104 1.70869 1.43292 1.08340 1.31606 0.84086 0.77006 0.75817 0.75939 1.21187 1.20878 1.20304 1.62183 1.58650 1.02367 1.01619 1.22284 0.96248 0.91895 1.01084 1.22026 0.96628 0.98402 0.90507 1.22033 1.01828 0.93996 0.88458 1.60130 1.14695 1.52413 1.01927 1.22354 1.02546 0.97406 0.86778 1.23123 0.95302 0.99572 1.02864 1.23250 0.98298 1.04029 0.97933 0.93210 0.92433 0.96006 0.92313 0.96439 0.93733 0.90827 0.95951 0.90691 0.90122 0.95190 0.84190 0.88375 0.88312 0.89014 0.88945 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.14 8.03 37.16 0.30 -3.84 16 2 C 0.19 4.53 1.89 -68.86 -0.13 4.40 16 3 H 0.03 0.76 6.57 -51.93 -0.34 0.42 16 4 C -0.59 -16.52 8.32 -34.44 -0.29 -16.80 16 5 H 0.06 1.92 7.15 -52.48 -0.38 1.54 16 6 C 0.03 0.87 5.33 -17.82 -0.09 0.78 16 7 N -0.91 -27.87 13.70 55.43 0.76 -27.11 16 8 Si 1.04 25.31 26.47 -169.99 -4.50 20.81 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.21 5.56 56.52 0.31 -5.89 16 12 N -0.52 -11.15 4.70 -236.28 -1.11 -12.26 16 13 C 0.03 0.65 8.62 60.07 0.52 1.17 16 14 C 0.05 0.94 4.79 -3.82 -0.02 0.92 16 15 C 0.07 0.98 5.47 -3.82 -0.02 0.96 16 16 N -0.66 -8.54 6.75 -106.73 -0.72 -9.26 16 17 C 0.02 0.22 6.25 -67.72 -0.42 -0.20 16 18 C -0.17 -1.70 10.46 -26.70 -0.28 -1.98 16 19 C -0.20 -1.80 10.34 -26.70 -0.28 -2.08 16 20 H 0.05 1.12 6.64 -51.93 -0.34 0.77 16 21 H 0.06 1.32 4.92 -51.93 -0.26 1.07 16 22 H 0.02 0.42 6.70 -51.92 -0.35 0.07 16 23 H 0.27 8.18 8.72 -40.82 -0.36 7.82 16 24 H 0.02 0.33 6.33 -51.93 -0.33 0.00 16 25 H 0.04 0.75 6.30 -51.93 -0.33 0.42 16 26 H 0.07 1.60 6.75 -51.93 -0.35 1.25 16 27 H 0.02 0.38 6.95 -51.93 -0.36 0.02 16 28 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.44 6.47 -51.93 -0.34 0.10 16 31 H 0.34 4.02 8.69 -39.30 -0.34 3.67 16 32 H 0.10 1.08 7.90 -51.93 -0.41 0.67 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 279.62 15.07 4.21 4.21 Total: -1.00 -29.60 279.62 -7.96 -37.56 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.88 Total: 2.72 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.71 Total: -16.67 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -1.07 Total: -48.63 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.50 Total: 20.81 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.60 -7.96 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.630 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds