Wall clock time and date at job start Mon Mar 30 2020 03:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47360 * 2 1 4 4 C 1.50700 * 109.47099 * 119.99555 * 2 1 3 5 5 H 1.08004 * 119.99534 * 114.52384 * 4 2 1 6 6 C 1.37878 * 120.00180 * 294.53219 * 4 2 1 7 7 N 1.31510 * 119.99760 * 160.59098 * 6 4 2 8 8 Si 1.86796 * 119.99790 * 340.86338 * 6 4 2 9 9 H 1.48503 * 109.47098 * 179.72449 * 8 6 4 10 10 H 1.48500 * 109.47352 * 299.72696 * 8 6 4 11 11 H 1.48505 * 109.47038 * 59.73082 * 8 6 4 12 12 N 1.46904 * 109.47316 * 239.99805 * 2 1 3 13 13 C 1.46904 * 110.99924 * 306.04685 * 12 2 1 14 14 C 1.46902 * 110.99898 * 70.00014 * 12 2 1 15 15 C 1.52998 * 109.46896 * 170.00103 * 14 12 2 16 16 N 1.46902 * 109.46896 * 179.97438 * 15 14 12 17 17 C 1.46903 * 110.99860 * 179.97438 * 16 15 14 18 18 C 1.52996 * 117.50078 * 223.74491 * 17 16 15 19 19 C 1.52996 * 117.49680 * 155.08707 * 17 16 15 20 20 H 1.08999 * 109.47202 * 185.12903 * 1 2 3 21 21 H 1.08997 * 109.47409 * 305.13470 * 1 2 3 22 22 H 1.09008 * 109.46955 * 65.13628 * 1 2 3 23 23 H 0.96996 * 120.00673 * 2.37574 * 7 6 4 24 24 H 1.08999 * 109.46999 * 60.00038 * 13 12 2 25 25 H 1.09002 * 109.46820 * 179.97438 * 13 12 2 26 26 H 1.08994 * 109.46697 * 300.00039 * 13 12 2 27 27 H 1.09001 * 109.47107 * 289.99958 * 14 12 2 28 28 H 1.09005 * 109.47054 * 50.00236 * 14 12 2 29 29 H 1.09001 * 109.47124 * 299.99845 * 15 14 12 30 30 H 1.08996 * 109.47358 * 60.00096 * 15 14 12 31 31 H 1.00892 * 111.00209 * 303.95366 * 16 15 14 32 32 H 1.08998 * 115.55073 * 9.42058 * 17 16 15 33 33 H 1.09002 * 117.49883 * 0.02562 * 18 17 16 34 34 H 1.09001 * 117.50081 * 145.02199 * 18 17 16 35 35 H 1.09007 * 117.49589 * 214.98359 * 19 17 16 36 36 H 1.09001 * 117.50446 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5783 -1.6371 1.1339 6 6 1.7947 -0.1771 2.4796 7 7 1.8771 -0.9408 3.5471 8 14 1.3483 1.6282 2.6550 9 1 1.1380 1.9491 4.0896 10 1 2.4506 2.4653 2.1169 11 1 0.1012 1.9055 1.8979 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0356 -1.3078 14 6 1.7530 0.0972 -2.4091 15 6 2.4885 -0.5258 -3.5972 16 7 2.2213 0.2636 -4.8070 17 6 2.9136 -0.3060 -5.9708 18 6 3.6269 0.6652 -6.9135 19 6 2.3278 -0.0141 -7.3537 20 1 -0.3633 -1.0235 0.0919 21 1 -0.3634 0.5914 0.8404 22 1 -0.3633 0.4321 -0.9325 23 1 2.1387 -1.8707 3.4592 24 1 0.3491 -1.9550 -1.3693 25 1 1.8134 -2.5258 -2.2045 26 1 1.7059 -2.6221 -0.4301 27 1 0.6814 0.1052 -2.6088 28 1 2.1026 1.1189 -2.2604 29 1 3.5601 -0.5338 -3.3975 30 1 2.1390 -1.5474 -3.7459 31 1 1.2298 0.3398 -4.9773 32 1 3.3712 -1.2827 -5.8140 33 1 3.5829 1.7268 -6.6700 34 1 4.5537 0.3273 -7.3772 35 1 2.4004 -0.7989 -8.1068 36 1 1.4286 0.6001 -7.4001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:34 Heat of formation + Delta-G solvation = 11.096875 kcal Electronic energy + Delta-G solvation = -14299.281909 eV Core-core repulsion = 12011.450180 eV Total energy + Delta-G solvation = -2287.831729 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.53239 -38.46837 -35.34294 -34.13817 -31.40803 -28.80233 -26.98407 -26.17530 -23.27453 -22.65446 -22.09668 -20.78695 -19.39473 -17.36855 -16.91130 -16.34446 -16.16054 -15.61595 -15.20340 -14.95335 -14.62152 -13.97102 -13.76451 -13.38150 -13.37859 -13.03734 -12.66211 -12.41147 -12.34616 -12.24596 -12.06936 -11.70798 -11.59441 -11.41876 -11.20060 -11.01598 -10.32493 -9.27860 -8.98014 -8.70975 -6.28938 1.46301 1.55139 1.73274 2.51066 2.82258 2.94651 3.09352 3.55024 4.02197 4.03712 4.09102 4.21988 4.34783 4.41708 4.47104 4.57882 4.61779 4.69332 4.73735 4.80666 4.82988 4.96401 5.00703 5.09846 5.12987 5.19969 5.31158 5.48220 5.84680 6.05577 6.08477 6.27977 6.39214 6.59436 6.75187 7.46898 8.67599 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055485 B = 0.005962 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.516328 B = 4694.968107 C = 4877.982983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.187 3.813 3 H 0.031 0.969 4 C -0.586 4.586 5 H 0.022 0.978 6 C -0.021 4.021 7 N -0.939 5.939 8 Si 1.082 2.918 9 H -0.290 1.290 10 H -0.267 1.267 11 H -0.243 1.243 12 N -0.544 5.544 13 C 0.041 3.959 14 C 0.059 3.941 15 C 0.080 3.920 16 N -0.664 5.664 17 C -0.001 4.001 18 C -0.173 4.173 19 C -0.178 4.178 20 H 0.040 0.960 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.251 0.749 24 H 0.025 0.975 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.346 0.654 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 3.063 -19.876 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.079 3.921 3 H 0.049 0.951 4 C -0.625 4.625 5 H 0.040 0.960 6 C -0.219 4.219 7 N -0.575 5.575 8 Si 0.903 3.097 9 H -0.216 1.216 10 H -0.192 1.192 11 H -0.167 1.167 12 N -0.268 5.268 13 C -0.108 4.108 14 C -0.070 4.070 15 C -0.049 4.049 16 N -0.296 5.296 17 C -0.111 4.111 18 C -0.211 4.211 19 C -0.216 4.216 20 H 0.059 0.941 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.166 0.834 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.261 4.608 -18.588 19.192 hybrid contribution -0.675 -2.407 -0.740 2.607 sum -1.936 2.201 -19.328 19.549 Atomic orbital electron populations 1.22687 0.99629 1.00733 1.00510 1.19481 0.90328 0.94091 0.88225 0.95113 1.22096 1.38682 1.09108 0.92569 0.95964 1.27090 0.94180 1.08736 0.91865 1.71000 1.45986 1.07801 1.32755 0.83613 0.78781 0.70985 0.76274 1.21605 1.19232 1.16744 1.62031 1.59347 1.03181 1.02240 1.22199 0.96696 0.91005 1.00874 1.22013 0.97686 0.97634 0.89650 1.21763 1.00458 0.94262 0.88440 1.60066 1.15426 1.52247 1.01871 1.22430 1.03827 0.97809 0.87068 1.23179 0.96463 0.98958 1.02478 1.23314 0.97920 1.03877 0.96531 0.94096 0.92992 0.92864 0.94046 0.95685 0.90815 0.94188 0.94710 0.91309 0.91591 0.94664 0.83417 0.88392 0.89074 0.87835 0.87341 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.48 8.03 71.98 0.58 -6.91 16 2 C 0.19 8.84 1.89 44.17 0.08 8.92 16 3 H 0.03 1.47 6.57 -2.38 -0.02 1.45 16 4 C -0.59 -33.67 8.32 25.60 0.21 -33.46 16 5 H 0.02 1.42 7.15 -2.91 -0.02 1.40 16 6 C -0.02 -1.21 5.33 84.66 0.45 -0.76 16 7 N -0.94 -59.43 13.70 21.45 0.29 -59.14 16 8 Si 1.08 50.14 26.47 68.60 1.82 51.95 16 9 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.24 -9.91 5.56 99.48 0.55 -9.36 16 12 N -0.54 -22.55 4.70 -901.44 -4.24 -26.79 16 13 C 0.04 1.55 8.62 127.69 1.10 2.65 16 14 C 0.06 1.92 4.79 86.30 0.41 2.34 16 15 C 0.08 2.22 5.47 86.30 0.47 2.69 16 16 N -0.66 -15.55 6.75 -491.58 -3.32 -18.87 16 17 C 0.00 -0.02 6.25 44.91 0.28 0.26 16 18 C -0.17 -3.04 10.46 30.61 0.32 -2.72 16 19 C -0.18 -2.72 10.34 30.61 0.32 -2.40 16 20 H 0.04 1.77 6.64 -2.39 -0.02 1.76 16 21 H 0.05 2.24 4.92 -2.39 -0.01 2.23 16 22 H 0.05 1.91 6.70 -2.38 -0.02 1.89 16 23 H 0.25 16.14 8.72 -92.71 -0.81 15.33 16 24 H 0.02 0.91 6.33 -2.39 -0.02 0.89 16 25 H 0.07 2.36 6.30 -2.39 -0.02 2.34 16 26 H 0.04 1.78 6.75 -2.39 -0.02 1.76 16 27 H 0.03 1.07 6.95 -2.39 -0.02 1.05 16 28 H 0.07 2.35 7.93 -2.38 -0.02 2.33 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 0.94 6.47 -2.39 -0.02 0.92 16 31 H 0.35 7.18 8.69 -89.70 -0.78 6.40 16 32 H 0.10 1.96 7.90 -2.39 -0.02 1.94 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -64.55 279.62 -1.13 -65.68 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.09 Total: 16.55 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.23 Total: -29.38 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -7.26 Total: -104.80 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 1.82 Total: 51.95 kcal Total: -64.55 -1.13 -65.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.775 kcal (2) G-P(sol) polarization free energy of solvation -64.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds