Wall clock time and date at job start Mon Mar 30 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46931 * 2 1 4 4 N 1.46901 * 109.47254 * 240.00232 * 2 1 3 5 5 C 1.52997 * 109.47038 * 119.99861 * 2 1 3 6 6 H 1.09003 * 109.46520 * 185.39970 * 5 2 1 7 7 C 1.53036 * 109.45547 * 65.42586 * 5 2 1 8 8 C 1.53121 * 109.28070 * 180.81183 * 7 5 2 9 9 C 1.53116 * 109.16208 * 57.65071 * 8 7 5 10 10 C 1.53041 * 109.28026 * 302.34599 * 9 8 7 11 11 N 1.46849 * 109.46370 * 305.37356 * 5 2 1 12 12 C 1.46897 * 111.00072 * 305.84788 * 11 5 2 13 13 C 1.50703 * 109.47203 * 169.08994 * 12 11 5 14 14 H 1.08000 * 119.99851 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99928 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99754 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47149 * 90.00030 * 17 15 13 19 19 H 1.48493 * 109.47252 * 210.00184 * 17 15 13 20 20 H 1.48502 * 109.47520 * 330.00632 * 17 15 13 21 21 H 1.09005 * 109.46778 * 60.00029 * 1 2 3 22 22 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47138 * 300.00492 * 1 2 3 24 24 H 1.00896 * 110.99979 * 64.49557 * 4 2 1 25 25 H 1.00895 * 110.99592 * 188.45348 * 4 2 1 26 26 H 1.09008 * 109.49806 * 300.74704 * 7 5 2 27 27 H 1.08994 * 109.50231 * 60.86191 * 7 5 2 28 28 H 1.08999 * 109.51637 * 297.74917 * 8 7 5 29 29 H 1.08998 * 109.57703 * 177.59013 * 8 7 5 30 30 H 1.08994 * 109.50692 * 182.40724 * 9 8 7 31 31 H 1.09002 * 109.53565 * 62.30622 * 9 8 7 32 32 H 1.09002 * 109.46359 * 299.16486 * 10 9 8 33 33 H 1.08999 * 109.46492 * 179.19579 * 10 9 8 34 34 H 1.09003 * 109.46977 * 289.08443 * 12 11 5 35 35 H 1.08998 * 109.47200 * 49.08845 * 12 11 5 36 36 H 0.96998 * 120.00450 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0400 -0.7212 1.2492 6 1 3.1257 -0.6382 1.2988 7 6 1.6441 -2.1980 1.1825 8 6 2.1387 -2.9115 2.4439 9 6 1.5453 -2.2230 3.6761 10 6 1.9442 -0.7455 3.6706 11 7 1.4474 -0.1077 2.4446 12 6 1.6910 1.3407 2.4688 13 6 0.8533 1.9731 3.5501 14 1 0.2050 1.3602 4.1588 15 6 0.9152 3.3339 3.7630 16 7 1.7049 4.0801 3.0222 17 14 -0.1238 4.1178 5.1029 18 1 0.6406 4.1346 6.3760 19 1 -0.4668 5.5090 4.7131 20 1 -1.3712 3.3329 5.2851 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.7579 -0.1942 -2.0368 25 1 3.0187 -0.8275 -1.1564 26 1 0.5591 -2.2813 1.1191 27 1 2.0969 -2.6567 0.3036 28 1 3.2267 -2.8618 2.4874 29 1 1.8222 -3.9543 2.4214 30 1 1.9276 -2.6997 4.5787 31 1 0.4588 -2.3067 3.6526 32 1 3.0303 -0.6623 3.7087 33 1 1.5114 -0.2492 4.5392 34 1 2.7458 1.5284 2.6699 35 1 1.4231 1.7704 1.5035 36 1 1.7488 5.0375 3.1722 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063196160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:39 Heat of formation + Delta-G solvation = -30.395255 kcal Electronic energy + Delta-G solvation = -15189.628396 eV Core-core repulsion = 12899.997434 eV Total energy + Delta-G solvation = -2289.630963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44489 -36.32078 -35.44754 -33.65116 -31.15762 -29.28416 -28.91732 -25.55972 -24.76435 -22.93556 -21.37423 -19.85905 -18.48706 -17.18226 -16.64735 -16.38051 -15.96745 -15.63775 -15.10687 -14.99646 -14.14385 -13.96766 -13.89131 -13.29109 -13.10514 -12.97049 -12.70049 -12.62158 -12.52448 -12.21488 -12.06088 -11.75401 -11.56490 -11.37394 -10.96376 -10.90588 -10.58991 -9.54811 -8.95107 -8.20376 -6.29526 1.39339 1.40477 1.52281 2.39426 3.11633 3.20966 3.70963 3.90343 4.06085 4.11428 4.21139 4.39229 4.42771 4.60655 4.68623 4.83026 4.91483 4.97486 5.05317 5.10836 5.15180 5.20721 5.25925 5.32489 5.36274 5.45287 5.56985 5.61441 5.70194 6.08775 6.20498 6.39754 6.62634 6.73545 6.87682 7.39858 8.90546 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032006 B = 0.010049 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.613024 B = 2785.555206 C = 3339.109214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.097 3.903 3 H 0.005 0.995 4 N -0.831 5.831 5 C 0.090 3.910 6 H 0.008 0.992 7 C -0.089 4.089 8 C -0.117 4.117 9 C -0.108 4.108 10 C 0.063 3.937 11 N -0.527 5.527 12 C 0.205 3.795 13 C -0.518 4.518 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.264 1.264 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.348 0.652 25 H 0.343 0.657 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.005 0.995 33 H 0.059 0.941 34 H -0.054 1.054 35 H 0.019 0.981 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -11.687 -3.913 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.015 4.015 3 H 0.023 0.977 4 N -0.362 5.362 5 C -0.020 4.020 6 H 0.025 0.975 7 C -0.127 4.127 8 C -0.155 4.155 9 C -0.146 4.146 10 C -0.066 4.066 11 N -0.253 5.253 12 C 0.079 3.921 13 C -0.556 4.556 14 H 0.080 0.920 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.188 1.188 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.066 0.934 24 H 0.161 0.839 25 H 0.155 0.845 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.078 0.922 34 H -0.036 1.036 35 H 0.037 0.963 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.847 -12.189 -3.726 12.773 hybrid contribution 1.331 2.208 0.513 2.629 sum 0.484 -9.980 -3.212 10.496 Atomic orbital electron populations 1.21567 0.93694 1.02069 1.00663 1.21183 0.96733 0.93310 0.90226 0.97695 1.58752 1.19124 1.54880 1.03440 1.21604 0.94058 0.96247 0.90052 0.97454 1.21451 1.01504 0.91724 0.98012 1.21614 0.99808 0.99781 0.94296 1.21577 1.01318 0.92860 0.98859 1.21984 0.95524 0.95830 0.93219 1.61998 1.57958 1.03848 1.01447 1.19447 0.91922 0.84085 0.96636 1.21463 1.24356 0.92593 1.17230 0.92037 1.25886 0.96953 0.97888 0.98926 1.70084 1.40067 1.06020 1.41454 0.85426 0.79147 0.77506 0.78822 1.19984 1.20779 1.18819 0.93294 0.91342 0.93399 0.83868 0.84481 0.91736 0.89858 0.92790 0.89718 0.90346 0.91631 0.97655 0.92219 1.03644 0.96302 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.90 71.98 0.64 -3.67 16 2 C 0.10 3.43 2.65 44.91 0.12 3.55 16 3 H 0.01 0.22 6.42 -2.38 -0.02 0.20 16 4 N -0.83 -22.03 8.28 -168.67 -1.40 -23.43 16 5 C 0.09 3.30 1.78 44.94 0.08 3.38 16 6 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 7 C -0.09 -2.63 4.92 30.65 0.15 -2.48 16 8 C -0.12 -3.10 6.00 30.67 0.18 -2.91 16 9 C -0.11 -3.26 6.09 30.65 0.19 -3.08 16 10 C 0.06 2.52 5.30 86.33 0.46 2.98 16 11 N -0.53 -23.15 3.61 -875.63 -3.16 -26.31 16 12 C 0.21 11.14 4.02 85.56 0.34 11.49 16 13 C -0.52 -29.77 8.44 25.60 0.22 -29.56 16 14 H 0.06 3.48 7.18 -2.91 -0.02 3.46 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 17 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 21 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 22 H 0.07 2.20 6.56 -2.39 -0.02 2.19 16 23 H 0.05 2.02 6.86 -2.39 -0.02 2.01 16 24 H 0.35 8.06 9.07 -89.70 -0.81 7.24 16 25 H 0.34 8.26 8.93 -89.70 -0.80 7.45 16 26 H 0.06 1.98 6.55 -2.38 -0.02 1.96 16 27 H 0.08 2.20 7.49 -2.39 -0.02 2.18 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.06 2.62 6.76 -2.39 -0.02 2.61 16 34 H -0.05 -3.28 8.12 -2.39 -0.02 -3.30 16 35 H 0.02 1.09 5.38 -2.39 -0.01 1.08 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -63.69 274.22 0.04 -63.64 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.55 Total: 15.72 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 2.84 Total: -19.77 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -4.27 Total: -106.50 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -63.69 0.04 -63.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063196160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.248 kcal (2) G-P(sol) polarization free energy of solvation -63.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds