Wall clock time and date at job start Mon Mar 30 2020 03:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46714 * 2 1 4 4 N 1.46898 * 109.47407 * 119.99429 * 2 1 3 5 5 C 1.53000 * 109.47514 * 240.00273 * 2 1 3 6 6 H 1.09000 * 109.45993 * 61.54316 * 5 2 1 7 7 C 1.53040 * 109.45631 * 301.56706 * 5 2 1 8 8 C 1.53120 * 109.27657 * 180.80204 * 7 5 2 9 9 C 1.53120 * 109.15914 * 57.65574 * 8 7 5 10 10 C 1.53039 * 109.28033 * 302.34937 * 9 8 7 11 11 N 1.46838 * 109.46331 * 181.51832 * 5 2 1 12 12 C 1.46900 * 111.00050 * 305.85090 * 11 5 2 13 13 C 1.50705 * 109.47294 * 172.27698 * 12 11 5 14 14 H 1.07999 * 119.99670 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00159 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99927 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47294 * 89.99665 * 17 15 13 19 19 H 1.48501 * 109.47388 * 209.99693 * 17 15 13 20 20 H 1.48494 * 109.46849 * 329.99721 * 17 15 13 21 21 H 1.09000 * 109.47373 * 306.35914 * 1 2 3 22 22 H 1.08996 * 109.47210 * 66.36487 * 1 2 3 23 23 H 1.09001 * 109.47088 * 186.36270 * 1 2 3 24 24 H 1.00898 * 111.00318 * 296.05147 * 4 2 1 25 25 H 1.00908 * 110.99502 * 60.00589 * 4 2 1 26 26 H 1.08997 * 109.50716 * 300.74785 * 7 5 2 27 27 H 1.09005 * 109.50232 * 60.83074 * 7 5 2 28 28 H 1.09002 * 109.52641 * 177.55836 * 8 7 5 29 29 H 1.09005 * 109.52651 * 297.69087 * 8 7 5 30 30 H 1.09007 * 109.50435 * 62.28715 * 9 8 7 31 31 H 1.08996 * 109.50581 * 182.36497 * 9 8 7 32 32 H 1.08999 * 109.46011 * 179.19776 * 10 9 8 33 33 H 1.09006 * 109.45962 * 299.16815 * 10 9 8 34 34 H 1.09003 * 109.47056 * 292.27685 * 12 11 5 35 35 H 1.08999 * 109.46992 * 52.27430 * 12 11 5 36 36 H 0.97001 * 119.99999 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0401 -0.7212 -1.2492 6 1 1.6994 -0.1914 -2.1389 7 6 1.4978 -2.1522 -1.2689 8 6 2.0269 -2.8762 -2.5100 9 6 3.5578 -2.8528 -2.4911 10 6 4.0403 -1.4015 -2.4358 11 7 3.5080 -0.7529 -1.2308 12 6 4.0618 0.5985 -1.0721 13 6 5.5522 0.5097 -0.8675 14 1 6.0393 -0.4541 -0.8560 15 6 6.2939 1.6590 -0.6939 16 7 5.7007 2.8327 -0.7073 17 14 8.1412 1.5490 -0.4395 18 1 8.8262 1.6027 -1.7560 19 1 8.5939 2.6866 0.4007 20 1 8.4721 0.2702 0.2388 21 1 -0.3634 0.6092 0.8276 22 1 -0.3633 0.4120 -0.9414 23 1 -0.3633 -1.0213 0.1139 24 1 1.7502 -0.1988 2.0372 25 1 1.6962 -1.6479 1.2228 26 1 1.8267 -2.6783 -0.3728 27 1 0.4084 -2.1281 -1.2977 28 1 1.6783 -3.9090 -2.5056 29 1 1.6651 -2.3735 -3.4070 30 1 3.9192 -3.3900 -1.6141 31 1 3.9402 -3.3300 -3.3933 32 1 5.1298 -1.3819 -2.4079 33 1 3.6901 -0.8685 -3.3199 34 1 3.8521 1.1845 -1.9670 35 1 3.6043 1.0793 -0.2075 36 1 6.2224 3.6412 -0.5848 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063196161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:42 Heat of formation + Delta-G solvation = -6.886351 kcal Electronic energy + Delta-G solvation = -15163.591058 eV Core-core repulsion = 12874.979518 eV Total energy + Delta-G solvation = -2288.611540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.87687 -35.01144 -33.48971 -31.68327 -29.67366 -28.02747 -26.78021 -23.68268 -23.51665 -21.00291 -20.01034 -18.50896 -16.29734 -15.79777 -15.11743 -14.40241 -14.11797 -14.06239 -13.30711 -13.24441 -12.69285 -12.54985 -12.30609 -12.25889 -11.74598 -11.49879 -11.11383 -10.72694 -10.66061 -10.62630 -10.46877 -10.21222 -9.94014 -9.84148 -9.19663 -8.94203 -8.28356 -7.97169 -6.93737 -5.90229 -3.88728 3.38886 3.44797 3.50205 4.52708 4.87569 5.12294 5.24029 5.25492 5.41034 5.45580 5.54382 5.67435 5.69910 5.80185 5.99370 6.05488 6.10340 6.21069 6.25977 6.36494 6.37353 6.49466 6.60770 6.71104 6.88348 6.91546 7.50193 7.56110 7.76802 7.96311 8.04611 8.30799 8.46002 8.77697 9.18732 9.73854 11.21024 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032063 B = 0.009995 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.081014 B = 2800.793027 C = 3364.475336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.093 3.907 3 H 0.088 0.912 4 N -0.816 5.816 5 C 0.094 3.906 6 H 0.025 0.975 7 C -0.112 4.112 8 C -0.117 4.117 9 C -0.116 4.116 10 C 0.062 3.938 11 N -0.511 5.511 12 C 0.194 3.806 13 C -0.495 4.495 14 H 0.061 0.939 15 C 0.053 3.947 16 N -0.902 5.902 17 Si 0.894 3.106 18 H -0.284 1.284 19 H -0.288 1.288 20 H -0.273 1.273 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.329 0.671 25 H 0.330 0.670 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.012 0.988 34 H -0.021 1.021 35 H 0.043 0.957 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.460 -8.288 -0.717 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.020 4.020 3 H 0.106 0.894 4 N -0.344 5.344 5 C -0.015 4.015 6 H 0.042 0.958 7 C -0.150 4.150 8 C -0.155 4.155 9 C -0.154 4.154 10 C -0.066 4.066 11 N -0.236 5.236 12 C 0.069 3.931 13 C -0.534 4.534 14 H 0.079 0.921 15 C -0.147 4.147 16 N -0.543 5.543 17 Si 0.723 3.277 18 H -0.210 1.210 19 H -0.214 1.214 20 H -0.198 1.198 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.141 0.859 25 H 0.144 0.856 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.030 0.970 34 H -0.003 1.003 35 H 0.061 0.939 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.523 -8.234 -0.585 11.865 hybrid contribution -0.316 0.548 -0.384 0.740 sum -8.839 -7.686 -0.970 11.754 Atomic orbital electron populations 1.22732 0.98970 1.01212 1.01735 1.21520 0.90156 0.99257 0.91024 0.89403 1.58593 1.67581 1.05187 1.03063 1.21501 0.90973 0.94233 0.94829 0.95764 1.21657 0.98336 0.96399 0.98599 1.21543 0.96711 0.99282 0.97940 1.21618 0.94809 0.97984 1.01019 1.21966 1.01050 0.92568 0.91037 1.61931 1.02550 1.23446 1.35644 1.19738 0.95021 0.82726 0.95589 1.21180 0.92110 0.92567 1.47543 0.92078 1.24959 0.98463 0.95400 0.95928 1.69962 1.35517 0.97394 1.51394 0.86555 0.85722 0.77578 0.77878 1.20994 1.21421 1.19831 0.93119 0.92569 0.92878 0.85900 0.85643 0.91112 0.92844 0.92887 0.92982 0.91498 0.92853 0.89959 0.96954 1.00314 0.93906 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 8.89 37.16 0.33 -2.14 16 2 C 0.09 1.58 2.61 -67.72 -0.18 1.40 16 3 H 0.09 1.78 6.25 -51.92 -0.32 1.45 16 4 N -0.82 -13.45 8.99 -4.67 -0.04 -13.50 16 5 C 0.09 1.73 1.75 -67.73 -0.12 1.61 16 6 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 7 C -0.11 -1.68 4.68 -26.65 -0.12 -1.80 16 8 C -0.12 -1.69 6.00 -26.61 -0.16 -1.85 16 9 C -0.12 -1.89 6.09 -26.65 -0.16 -2.06 16 10 C 0.06 1.27 5.28 -3.83 -0.02 1.25 16 11 N -0.51 -11.25 4.30 -228.12 -0.98 -12.23 16 12 C 0.19 5.18 4.40 -4.97 -0.02 5.15 16 13 C -0.50 -14.29 8.41 -34.44 -0.29 -14.58 16 14 H 0.06 1.76 6.96 -52.49 -0.37 1.39 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 17 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.63 6.78 -51.93 -0.35 0.28 16 24 H 0.33 4.82 9.07 -39.29 -0.36 4.47 16 25 H 0.33 4.82 7.20 -39.29 -0.28 4.53 16 26 H 0.07 1.08 6.66 -51.93 -0.35 0.73 16 27 H 0.05 0.70 6.59 -51.93 -0.34 0.35 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.83 6.54 -51.93 -0.34 1.49 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 34 H -0.02 -0.60 8.14 -51.93 -0.42 -1.03 16 35 H 0.04 1.21 5.80 -51.93 -0.30 0.91 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 274.45 15.07 4.14 4.14 Total: -1.00 -30.53 274.45 -7.96 -38.50 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.95 Total: 4.08 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.84 Total: -11.58 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.29 Total: -52.40 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.53 -7.96 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063196161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.611 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds