Wall clock time and date at job start Mon Mar 30 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47128 * 2 1 4 4 N 1.46899 * 109.47126 * 239.99619 * 2 1 3 5 5 C 1.53005 * 109.46983 * 119.99281 * 2 1 3 6 6 H 1.08989 * 109.45752 * 298.06149 * 5 2 1 7 7 C 1.53042 * 109.46145 * 58.03973 * 5 2 1 8 8 C 1.53114 * 109.27696 * 179.19541 * 7 5 2 9 9 C 1.53117 * 109.16233 * 302.33864 * 8 7 5 10 10 C 1.53039 * 109.27646 * 57.65567 * 9 8 7 11 11 N 1.46847 * 109.52298 * 300.82375 * 10 9 8 12 12 C 1.46905 * 110.99670 * 185.83869 * 11 10 9 13 13 C 1.50699 * 109.47386 * 65.00253 * 12 11 10 14 14 H 1.08006 * 119.99765 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99971 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00102 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99652 * 180.27577 * 15 13 12 18 18 H 1.48499 * 109.46826 * 269.72287 * 17 15 13 19 19 H 1.48498 * 109.47402 * 29.72712 * 17 15 13 20 20 H 1.48502 * 109.46812 * 149.72772 * 17 15 13 21 21 H 1.08997 * 109.47291 * 302.40318 * 1 2 3 22 22 H 1.08999 * 109.46855 * 62.40377 * 1 2 3 23 23 H 1.09003 * 109.46785 * 182.40019 * 1 2 3 24 24 H 1.00901 * 110.99697 * 176.04734 * 4 2 1 25 25 H 1.00900 * 111.00358 * 299.99444 * 4 2 1 26 26 H 1.08999 * 109.50400 * 59.24959 * 7 5 2 27 27 H 1.09004 * 109.49842 * 299.13470 * 7 5 2 28 28 H 1.09010 * 109.52160 * 182.43753 * 8 7 5 29 29 H 1.08998 * 109.52886 * 62.24948 * 8 7 5 30 30 H 1.09000 * 109.50144 * 297.71979 * 9 8 7 31 31 H 1.08995 * 109.54010 * 177.62190 * 9 8 7 32 32 H 1.08998 * 109.46360 * 180.80295 * 10 9 8 33 33 H 1.09001 * 109.45127 * 60.83378 * 10 9 8 34 34 H 1.08997 * 109.47187 * 305.00173 * 12 11 10 35 35 H 1.09002 * 109.46724 * 185.00246 * 12 11 10 36 36 H 0.96996 * 119.99796 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0400 -0.7211 1.2494 6 1 1.7052 -0.1874 2.1387 7 6 1.4898 -2.1490 1.2742 8 6 2.0188 -2.8730 2.5154 9 6 3.5497 -2.8584 2.4915 10 6 4.0403 -1.4100 2.4312 11 7 3.5077 -0.7612 1.2263 12 6 4.0687 0.5866 1.0626 13 6 5.5522 0.4869 0.8170 14 1 6.0305 -0.4809 0.7853 15 6 6.2987 1.6312 0.6318 16 7 5.7162 2.8097 0.6700 17 14 8.1363 1.5072 0.3198 18 1 8.8621 1.5485 1.6147 19 1 8.4354 0.2292 -0.3749 20 1 8.5722 2.6455 -0.5285 21 1 -0.3634 0.5507 0.8676 22 1 -0.3633 0.4761 -0.9108 23 1 -0.3633 -1.0268 0.0430 24 1 3.0262 -0.6501 -1.2558 25 1 1.6963 -1.6480 -1.2226 26 1 1.8129 -2.6791 0.3783 27 1 0.4007 -2.1187 1.3071 28 1 1.6643 -3.9038 2.5145 29 1 1.6636 -2.3655 3.4123 30 1 3.9051 -3.3997 1.6147 31 1 3.9330 -3.3352 3.3935 32 1 5.1297 -1.3965 2.3997 33 1 3.6959 -0.8731 3.3151 34 1 3.8884 1.1675 1.9670 35 1 3.5922 1.0778 0.2142 36 1 6.2414 3.6147 0.5393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063196162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:45 Heat of formation + Delta-G solvation = -32.597900 kcal Electronic energy + Delta-G solvation = -15205.545380 eV Core-core repulsion = 12915.818904 eV Total energy + Delta-G solvation = -2289.726477 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54747 -36.28314 -35.47256 -33.67106 -30.87876 -29.50427 -28.90526 -25.52380 -24.86790 -22.88327 -21.44202 -19.98658 -18.50032 -17.11434 -16.83530 -16.19736 -15.95978 -15.38769 -15.19398 -14.70787 -14.43567 -14.12930 -14.06593 -13.52435 -13.19060 -12.77988 -12.65162 -12.57891 -12.48091 -12.17379 -12.00820 -11.95688 -11.54726 -11.49405 -11.15279 -10.83944 -10.57891 -9.43113 -9.00533 -8.20569 -6.30093 1.39205 1.40690 1.52188 2.39087 3.11551 3.22433 3.79817 3.86073 4.05697 4.06251 4.26658 4.36849 4.43270 4.49749 4.64977 4.69859 4.85810 4.92686 4.97940 5.05849 5.10682 5.12299 5.19645 5.25157 5.31780 5.35453 5.44081 5.50903 5.66186 6.06342 6.35559 6.37918 6.68150 6.79371 6.86779 7.39465 8.90448 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032363 B = 0.010015 C = 0.008369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.980348 B = 2795.045420 C = 3344.985861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.092 3.908 3 H 0.042 0.958 4 N -0.833 5.833 5 C 0.047 3.953 6 H 0.011 0.989 7 C -0.104 4.104 8 C -0.115 4.115 9 C -0.108 4.108 10 C 0.062 3.938 11 N -0.528 5.528 12 C 0.205 3.795 13 C -0.519 4.519 14 H 0.062 0.938 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.276 1.276 19 H -0.263 1.263 20 H -0.283 1.283 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.342 0.658 25 H 0.341 0.659 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.003 0.997 34 H -0.056 1.056 35 H 0.021 0.979 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 -10.927 1.760 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 H 0.061 0.939 4 N -0.362 5.362 5 C -0.063 4.063 6 H 0.029 0.971 7 C -0.142 4.142 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.066 4.066 11 N -0.253 5.253 12 C 0.079 3.921 13 C -0.558 4.558 14 H 0.080 0.920 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.201 1.201 19 H -0.187 1.187 20 H -0.209 1.209 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.155 0.845 25 H 0.154 0.846 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.021 0.979 34 H -0.038 1.038 35 H 0.039 0.961 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.577 -10.481 0.917 13.574 hybrid contribution 1.435 0.710 1.436 2.151 sum -7.142 -9.771 2.353 12.329 Atomic orbital electron populations 1.21787 0.92480 1.03030 1.01905 1.21409 0.96180 0.96569 0.87923 0.93944 1.59072 1.17185 1.20904 1.39047 1.22478 0.88531 0.97865 0.97453 0.97098 1.21644 1.00385 0.93079 0.99055 1.21564 0.94878 1.01254 0.97539 1.21573 0.96493 0.94276 1.02265 1.21975 0.99628 0.95345 0.89658 1.61987 1.05125 1.20519 1.37643 1.19438 0.94645 0.84830 0.93176 1.21443 0.93497 0.92763 1.48073 0.91977 1.25895 1.03676 0.94874 0.95210 1.70093 1.37778 0.98258 1.51327 0.85411 0.79224 0.77993 0.78152 1.20124 1.18747 1.20871 0.92290 0.92002 0.90494 0.84483 0.84561 0.91160 0.89537 0.89435 0.92831 0.91518 0.90481 0.92310 0.97894 1.03805 0.96149 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.16 71.98 0.66 -2.90 16 2 C 0.09 3.21 2.66 44.92 0.12 3.33 16 3 H 0.04 1.85 6.24 -2.39 -0.01 1.84 16 4 N -0.83 -28.20 9.16 -168.68 -1.55 -29.74 16 5 C 0.05 1.67 1.76 44.94 0.08 1.75 16 6 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 7 C -0.10 -2.71 4.67 30.65 0.14 -2.57 16 8 C -0.11 -2.79 6.00 30.67 0.18 -2.61 16 9 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 10 C 0.06 2.44 5.29 86.33 0.46 2.90 16 11 N -0.53 -22.37 3.86 -875.63 -3.38 -25.75 16 12 C 0.21 11.02 4.20 85.56 0.36 11.38 16 13 C -0.52 -29.54 8.42 25.60 0.22 -29.33 16 14 H 0.06 3.46 7.06 -2.91 -0.02 3.44 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 17 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.08 1.67 6.28 -2.39 -0.01 1.66 16 24 H 0.34 13.57 8.07 -89.69 -0.72 12.84 16 25 H 0.34 9.68 7.21 -89.69 -0.65 9.03 16 26 H 0.07 1.80 6.67 -2.39 -0.02 1.78 16 27 H 0.09 1.86 6.39 -2.38 -0.02 1.84 16 28 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.55 6.64 -2.39 -0.02 2.54 16 33 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 34 H -0.06 -3.38 8.13 -2.39 -0.02 -3.40 16 35 H 0.02 1.18 5.55 -2.39 -0.01 1.17 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -63.26 272.57 -0.06 -63.32 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.31 Total: 22.55 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 2.87 Total: -20.42 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -4.64 Total: -112.33 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.26 -0.06 -63.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063196162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.719 kcal (2) G-P(sol) polarization free energy of solvation -63.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds