Wall clock time and date at job start Mon Mar 30 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47281 * 2 1 4 4 N 1.46908 * 109.47057 * 120.00334 * 2 1 3 5 5 C 1.53008 * 109.47112 * 239.99794 * 2 1 3 6 6 H 1.09000 * 109.46033 * 174.36179 * 5 2 1 7 7 C 1.53033 * 109.46039 * 294.33247 * 5 2 1 8 8 C 1.53123 * 109.27249 * 179.19501 * 7 5 2 9 9 C 1.53117 * 109.15528 * 302.33702 * 8 7 5 10 10 C 1.53044 * 109.27462 * 57.67382 * 9 8 7 11 11 N 1.46847 * 109.45801 * 54.38682 * 5 2 1 12 12 C 1.46899 * 111.00153 * 54.14657 * 11 5 2 13 13 C 1.50703 * 109.46872 * 191.50709 * 12 11 5 14 14 H 1.08002 * 119.99992 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99834 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00241 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47075 * 60.00335 * 17 15 13 19 19 H 1.48497 * 109.47336 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47133 * 300.00769 * 17 15 13 21 21 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47458 * 299.99814 * 1 2 3 23 23 H 1.09000 * 109.47147 * 60.00475 * 1 2 3 24 24 H 1.00894 * 111.00039 * 54.08929 * 4 2 1 25 25 H 1.00903 * 110.99775 * 178.05024 * 4 2 1 26 26 H 1.09006 * 109.50398 * 299.13093 * 7 5 2 27 27 H 1.08993 * 109.50728 * 59.25643 * 7 5 2 28 28 H 1.09003 * 109.52422 * 62.25527 * 8 7 5 29 29 H 1.09011 * 109.51841 * 182.43901 * 8 7 5 30 30 H 1.08999 * 109.51337 * 297.72781 * 9 8 7 31 31 H 1.08995 * 109.49766 * 177.60780 * 9 8 7 32 32 H 1.08993 * 109.45561 * 180.79605 * 10 9 8 33 33 H 1.09000 * 109.46199 * 60.81296 * 10 9 8 34 34 H 1.09001 * 109.47105 * 311.50506 * 12 11 5 35 35 H 1.09002 * 109.47209 * 71.50724 * 12 11 5 36 36 H 0.97000 * 120.00008 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0400 -0.7213 -1.2493 6 1 3.1253 -0.6346 -1.3010 7 6 1.6494 -2.1993 -1.1798 8 6 2.1443 -2.9127 -2.4411 9 6 1.5459 -2.2281 -3.6730 10 6 1.9397 -0.7492 -3.6703 11 7 1.4429 -0.1115 -2.4443 12 6 1.6814 1.3377 -2.4709 13 6 0.8283 1.9676 -3.5417 14 1 0.1747 1.3528 -4.1426 15 6 0.8823 3.3288 -3.7541 16 7 1.6786 4.0775 -3.0227 17 14 -0.1746 4.1095 -5.0818 18 1 -1.6073 3.8484 -4.7913 19 1 0.0664 5.5746 -5.1087 20 1 0.1772 3.5261 -6.4013 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6193 -1.6158 1.2727 25 1 3.0278 -0.7339 1.2069 26 1 2.1056 -2.6554 -0.3011 27 1 0.5650 -2.2865 -1.1142 28 1 3.2320 -2.8594 -2.4867 29 1 1.8306 -3.9564 -2.4160 30 1 0.4597 -2.3155 -3.6465 31 1 1.9280 -2.7047 -4.5757 32 1 1.5034 -0.2557 -4.5387 33 1 3.0255 -0.6624 -3.7105 34 1 1.4239 1.7662 -1.5023 35 1 2.7330 1.5290 -2.6848 36 1 1.7169 5.0351 -3.1724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063196163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:48 Heat of formation + Delta-G solvation = -10.572728 kcal Electronic energy + Delta-G solvation = -15211.335477 eV Core-core repulsion = 12922.564084 eV Total energy + Delta-G solvation = -2288.771393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.08040 -34.99473 -33.64903 -31.84733 -29.58623 -28.00149 -26.95086 -23.75992 -23.48547 -21.14840 -20.21129 -18.44179 -16.33861 -15.65872 -15.35257 -14.78747 -14.34818 -13.97995 -13.68088 -13.58345 -12.66478 -12.45728 -12.14041 -11.92605 -11.55981 -11.22175 -11.05253 -10.99269 -10.79664 -10.60752 -10.44071 -10.27908 -10.02715 -9.96659 -9.46183 -9.15787 -8.42118 -8.27630 -7.19433 -6.00925 -4.02005 3.33962 3.38290 3.40998 4.42878 4.81050 4.97183 5.16391 5.21366 5.32849 5.38700 5.51422 5.69812 5.80965 5.91692 6.00380 6.10632 6.16825 6.23852 6.27924 6.34809 6.46561 6.59831 6.72527 6.76016 6.80249 7.03477 7.28054 7.37369 7.53067 7.75164 7.83129 8.13278 8.24590 8.58921 9.05485 9.61961 11.09712 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.010023 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.599150 B = 2792.802856 C = 3333.014777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.091 3.909 3 H 0.087 0.913 4 N -0.844 5.844 5 C 0.054 3.946 6 H 0.022 0.978 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.117 4.117 10 C 0.064 3.936 11 N -0.523 5.523 12 C 0.188 3.812 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.043 0.957 22 H 0.045 0.955 23 H 0.085 0.915 24 H 0.333 0.667 25 H 0.333 0.667 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.015 0.985 34 H 0.040 0.960 35 H -0.014 1.014 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -11.363 2.950 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.021 4.021 3 H 0.105 0.895 4 N -0.372 5.372 5 C -0.057 4.057 6 H 0.040 0.960 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.064 4.064 11 N -0.248 5.248 12 C 0.063 3.937 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.146 0.854 25 H 0.145 0.855 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.004 0.996 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.203 -10.635 3.418 11.173 hybrid contribution 0.916 -0.024 -1.486 1.746 sum 0.714 -10.659 1.931 10.856 Atomic orbital electron populations 1.21709 0.93786 1.01032 1.02526 1.21563 0.96675 0.98005 0.85821 0.89524 1.59157 1.12145 1.24478 1.41430 1.22334 0.95586 0.94066 0.93713 0.95973 1.21671 1.01800 0.95017 0.96661 1.21536 0.99766 0.98418 0.95723 1.21621 1.01201 0.96066 0.96585 1.21941 0.96395 0.93063 0.95044 1.62067 1.57078 1.06390 0.99291 1.19825 0.94862 0.80726 0.98303 1.21112 1.23733 0.92017 1.17603 0.92006 1.24975 0.95761 0.97296 0.96524 1.69947 1.38178 1.05648 1.39994 0.86591 0.80926 0.77984 0.82077 1.20169 1.21408 1.20394 0.93786 0.93574 0.89662 0.85448 0.85508 0.93041 0.90928 0.92968 0.92725 0.91490 0.92650 0.89910 0.96659 0.94180 0.99644 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.82 37.16 0.33 -2.01 16 2 C 0.09 1.58 2.71 -67.71 -0.18 1.40 16 3 H 0.09 1.78 6.42 -51.93 -0.33 1.45 16 4 N -0.84 -12.12 9.01 -4.66 -0.04 -12.16 16 5 C 0.05 0.96 1.85 -67.72 -0.12 0.84 16 6 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 7 C -0.11 -1.65 4.65 -26.65 -0.12 -1.78 16 8 C -0.12 -1.63 6.00 -26.61 -0.16 -1.79 16 9 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 10 C 0.06 1.25 5.30 -3.83 -0.02 1.23 16 11 N -0.52 -10.95 3.60 -228.11 -0.82 -11.78 16 12 C 0.19 4.80 4.01 -4.97 -0.02 4.78 16 13 C -0.51 -14.01 8.44 -34.44 -0.29 -14.30 16 14 H 0.06 1.70 7.22 -52.49 -0.38 1.32 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H 0.04 0.69 6.57 -51.93 -0.34 0.35 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 1.75 6.84 -51.93 -0.36 1.39 16 24 H 0.33 4.22 7.30 -39.30 -0.29 3.93 16 25 H 0.33 4.38 9.02 -39.29 -0.35 4.02 16 26 H 0.05 0.64 6.80 -51.93 -0.35 0.29 16 27 H 0.07 1.09 6.55 -51.93 -0.34 0.75 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.75 6.81 -51.93 -0.35 1.40 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.04 1.08 5.36 -51.93 -0.28 0.80 16 35 H -0.01 -0.40 8.11 -51.93 -0.42 -0.82 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 272.41 15.07 4.11 4.11 Total: -1.00 -28.66 272.41 -7.79 -36.45 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.89 Total: 4.76 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.86 Total: -12.13 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.13 Total: -49.80 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.66 -7.79 -36.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063196163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.875 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds