Wall clock time and date at job start Mon Mar 30 2020 03:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47281 * 2 1 4 4 N 1.46908 * 109.47057 * 120.00334 * 2 1 3 5 5 C 1.53008 * 109.47112 * 239.99794 * 2 1 3 6 6 H 1.09000 * 109.46033 * 174.36179 * 5 2 1 7 7 C 1.53033 * 109.46039 * 294.33247 * 5 2 1 8 8 C 1.53123 * 109.27249 * 179.19501 * 7 5 2 9 9 C 1.53117 * 109.15528 * 302.33702 * 8 7 5 10 10 C 1.53044 * 109.27462 * 57.67382 * 9 8 7 11 11 N 1.46847 * 109.45801 * 54.38682 * 5 2 1 12 12 C 1.46899 * 111.00153 * 54.14657 * 11 5 2 13 13 C 1.50703 * 109.46872 * 191.50709 * 12 11 5 14 14 H 1.08002 * 119.99992 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99834 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00241 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47075 * 60.00335 * 17 15 13 19 19 H 1.48497 * 109.47336 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47133 * 300.00769 * 17 15 13 21 21 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47458 * 299.99814 * 1 2 3 23 23 H 1.09000 * 109.47147 * 60.00475 * 1 2 3 24 24 H 1.00894 * 111.00039 * 54.08929 * 4 2 1 25 25 H 1.00903 * 110.99775 * 178.05024 * 4 2 1 26 26 H 1.09006 * 109.50398 * 299.13093 * 7 5 2 27 27 H 1.08993 * 109.50728 * 59.25643 * 7 5 2 28 28 H 1.09003 * 109.52422 * 62.25527 * 8 7 5 29 29 H 1.09011 * 109.51841 * 182.43901 * 8 7 5 30 30 H 1.08999 * 109.51337 * 297.72781 * 9 8 7 31 31 H 1.08995 * 109.49766 * 177.60780 * 9 8 7 32 32 H 1.08993 * 109.45561 * 180.79605 * 10 9 8 33 33 H 1.09000 * 109.46199 * 60.81296 * 10 9 8 34 34 H 1.09001 * 109.47105 * 311.50506 * 12 11 5 35 35 H 1.09002 * 109.47209 * 71.50724 * 12 11 5 36 36 H 0.97000 * 120.00008 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0400 -0.7213 -1.2493 6 1 3.1253 -0.6346 -1.3010 7 6 1.6494 -2.1993 -1.1798 8 6 2.1443 -2.9127 -2.4411 9 6 1.5459 -2.2281 -3.6730 10 6 1.9397 -0.7492 -3.6703 11 7 1.4429 -0.1115 -2.4443 12 6 1.6814 1.3377 -2.4709 13 6 0.8283 1.9676 -3.5417 14 1 0.1747 1.3528 -4.1426 15 6 0.8823 3.3288 -3.7541 16 7 1.6786 4.0775 -3.0227 17 14 -0.1746 4.1095 -5.0818 18 1 -1.6073 3.8484 -4.7913 19 1 0.0664 5.5746 -5.1087 20 1 0.1772 3.5261 -6.4013 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6193 -1.6158 1.2727 25 1 3.0278 -0.7339 1.2069 26 1 2.1056 -2.6554 -0.3011 27 1 0.5650 -2.2865 -1.1142 28 1 3.2320 -2.8594 -2.4867 29 1 1.8306 -3.9564 -2.4160 30 1 0.4597 -2.3155 -3.6465 31 1 1.9280 -2.7047 -4.5757 32 1 1.5034 -0.2557 -4.5387 33 1 3.0255 -0.6624 -3.7105 34 1 1.4239 1.7662 -1.5023 35 1 2.7330 1.5290 -2.6848 36 1 1.7169 5.0351 -3.1724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063196163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:47 Heat of formation + Delta-G solvation = -30.920010 kcal Electronic energy + Delta-G solvation = -15212.217802 eV Core-core repulsion = 12922.564084 eV Total energy + Delta-G solvation = -2289.653718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56528 -36.40729 -35.46339 -33.70100 -30.92471 -29.39299 -28.92655 -25.52871 -24.88852 -22.92650 -21.55932 -19.90117 -18.47475 -17.05238 -16.93434 -16.35460 -16.16126 -15.34756 -15.16053 -14.98748 -14.16335 -14.10574 -13.88842 -13.52325 -13.17358 -12.77718 -12.68574 -12.61885 -12.44442 -12.34178 -12.05244 -11.79568 -11.51390 -11.47406 -11.15221 -10.91002 -10.56330 -9.57869 -8.97041 -8.19222 -6.28775 1.39647 1.42685 1.50519 2.39876 3.12661 3.24863 3.72414 3.84716 3.95589 4.03149 4.17136 4.35924 4.40810 4.51652 4.65717 4.75738 4.87229 4.92146 4.98108 5.08351 5.10106 5.15872 5.20812 5.28927 5.36493 5.38670 5.52422 5.56191 5.67686 6.08923 6.20927 6.39196 6.65959 6.72512 6.87851 7.40516 8.91401 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.010023 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.599150 B = 2792.802856 C = 3333.014777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.098 3.902 3 H 0.045 0.955 4 N -0.835 5.835 5 C 0.053 3.947 6 H 0.008 0.992 7 C -0.106 4.106 8 C -0.114 4.114 9 C -0.108 4.108 10 C 0.061 3.939 11 N -0.523 5.523 12 C 0.206 3.794 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.269 1.269 21 H 0.068 0.932 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.349 0.651 25 H 0.343 0.657 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.003 0.997 34 H 0.020 0.980 35 H -0.054 1.054 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -13.593 2.928 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.014 4.014 3 H 0.063 0.937 4 N -0.366 5.366 5 C -0.058 4.058 6 H 0.026 0.974 7 C -0.144 4.144 8 C -0.151 4.151 9 C -0.146 4.146 10 C -0.068 4.068 11 N -0.248 5.248 12 C 0.079 3.921 13 C -0.558 4.558 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.087 0.913 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.164 0.836 25 H 0.156 0.844 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.022 0.978 34 H 0.038 0.962 35 H -0.037 1.037 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.997 -12.904 3.404 13.383 hybrid contribution 1.214 0.652 -1.435 1.990 sum 0.217 -12.252 1.968 12.411 Atomic orbital electron populations 1.21580 0.93606 1.02075 1.00916 1.21283 0.96674 0.96341 0.87082 0.93713 1.59016 1.12998 1.25360 1.39246 1.22481 0.94605 0.96525 0.92209 0.97365 1.21655 1.02122 0.92034 0.98588 1.21551 0.99768 0.99818 0.93999 1.21571 1.01387 0.92800 0.98865 1.21998 0.95434 0.95895 0.93436 1.62028 1.57591 1.03904 1.01294 1.19440 0.91950 0.84004 0.96662 1.21422 1.23810 0.92533 1.18018 0.92071 1.25889 0.97023 0.97893 0.98850 1.70086 1.39767 1.05935 1.41732 0.85485 0.79253 0.76973 0.79208 1.19224 1.20945 1.19404 0.91301 0.93260 0.93166 0.83645 0.84434 0.90027 0.90777 0.92825 0.89390 0.91486 0.90415 0.92386 0.97844 0.96159 1.03682 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.82 71.98 0.64 -3.68 16 2 C 0.10 3.45 2.71 44.92 0.12 3.57 16 3 H 0.04 1.95 6.42 -2.39 -0.02 1.93 16 4 N -0.84 -22.56 9.01 -168.67 -1.52 -24.08 16 5 C 0.05 1.86 1.85 44.94 0.08 1.94 16 6 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 7 C -0.11 -2.76 4.65 30.65 0.14 -2.62 16 8 C -0.11 -2.75 6.00 30.67 0.18 -2.56 16 9 C -0.11 -3.12 6.09 30.65 0.19 -2.94 16 10 C 0.06 2.40 5.30 86.33 0.46 2.86 16 11 N -0.52 -22.47 3.60 -875.62 -3.15 -25.62 16 12 C 0.21 11.11 4.01 85.56 0.34 11.46 16 13 C -0.52 -29.80 8.44 25.60 0.22 -29.58 16 14 H 0.06 3.44 7.22 -2.91 -0.02 3.42 16 15 C 0.00 0.07 5.46 84.65 0.46 0.54 16 16 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 17 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H 0.07 2.02 6.57 -2.39 -0.02 2.00 16 22 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 2.10 6.84 -2.39 -0.02 2.08 16 24 H 0.35 7.67 7.30 -89.70 -0.65 7.01 16 25 H 0.34 8.42 9.02 -89.69 -0.81 7.61 16 26 H 0.08 1.67 6.80 -2.38 -0.02 1.65 16 27 H 0.07 1.95 6.55 -2.39 -0.02 1.94 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 2.53 6.81 -2.39 -0.02 2.51 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.02 1.18 5.36 -2.39 -0.01 1.16 16 35 H -0.05 -3.30 8.11 -2.39 -0.02 -3.32 16 36 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -64.39 272.41 0.07 -64.31 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.40 Total: 16.39 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 2.83 Total: -21.01 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -4.39 Total: -106.67 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.39 0.07 -64.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063196163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.394 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds