Wall clock time and date at job start Mon Mar 30 2020 02:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.51184 * 2 1 4 4 C 1.53053 * 109.48712 * 120.05653 * 2 1 3 5 5 N 1.46951 * 109.36898 * 61.56132 * 4 2 1 6 6 C 1.46964 * 110.87944 * 59.32085 * 5 4 2 7 7 C 1.53045 * 109.36354 * 300.68138 * 6 5 4 8 8 H 1.09006 * 109.48809 * 298.43414 * 7 6 5 9 9 C 1.53000 * 109.51006 * 178.37991 * 7 6 5 10 10 N 1.46959 * 109.36948 * 58.40121 * 7 6 5 11 11 C 1.46891 * 111.00406 * 176.81145 * 10 7 6 12 12 C 1.53007 * 109.47311 * 170.00056 * 11 10 7 13 13 C 1.50697 * 109.46894 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00599 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.08996 * 109.47338 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46529 * 300.05679 * 1 2 3 23 23 H 1.08996 * 109.46856 * 60.05555 * 1 2 3 24 24 H 1.08994 * 109.48908 * 301.59254 * 4 2 1 25 25 H 1.09001 * 109.50556 * 181.54125 * 4 2 1 26 26 H 1.00899 * 111.00317 * 183.18715 * 5 4 2 27 27 H 1.09001 * 109.48862 * 180.71310 * 6 5 4 28 28 H 1.09000 * 109.48979 * 60.64730 * 6 5 4 29 29 H 1.09005 * 109.46771 * 300.09867 * 9 7 6 30 30 H 1.09001 * 109.47161 * 60.09300 * 9 7 6 31 31 H 1.08995 * 109.47508 * 180.09489 * 9 7 6 32 32 H 1.09000 * 109.47319 * 49.99989 * 11 10 7 33 33 H 1.08999 * 109.47480 * 289.99766 * 11 10 7 34 34 H 1.08995 * 109.46729 * 60.00100 * 12 11 10 35 35 H 1.09007 * 109.46460 * 299.99955 * 12 11 10 36 36 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0406 -0.7227 1.2488 5 7 1.5808 -2.1182 1.2266 6 6 2.0710 -2.8121 0.0274 7 6 1.5605 -2.0896 -1.2214 8 1 0.4708 -2.1132 -1.2352 9 6 2.1020 -2.7855 -2.4717 10 7 2.0203 -0.6939 -1.1991 11 6 1.6134 0.0139 -2.4202 12 6 1.8856 1.5107 -2.2568 13 6 1.4676 2.2369 -3.5094 14 1 1.0493 1.6862 -4.3389 15 6 1.6183 3.6047 -3.5960 16 7 1.2540 4.2386 -4.6892 17 14 2.3411 4.5575 -2.1610 18 1 1.2488 4.9849 -1.2502 19 1 3.2924 3.6906 -1.4201 20 1 3.0566 5.7543 -2.6716 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5147 0.8895 23 1 -0.3633 0.5130 -0.8905 24 1 1.6544 -0.2268 2.1393 25 1 3.1302 -0.6990 1.2631 26 1 1.8602 -2.6045 2.0653 27 1 1.7070 -3.8396 0.0275 28 1 3.1610 -2.8122 0.0274 29 1 3.1918 -2.7623 -2.4571 30 1 1.7609 -3.8206 -2.4880 31 1 1.7395 -2.2694 -3.3606 32 1 0.5493 -0.1449 -2.5949 33 1 2.1818 -0.3681 -3.2682 34 1 2.9497 1.6695 -2.0822 35 1 1.3171 1.8928 -1.4088 36 1 1.3604 5.2007 -4.7502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068915075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:47 Heat of formation + Delta-G solvation = 3.479554 kcal Electronic energy + Delta-G solvation = -15115.374577 eV Core-core repulsion = 12827.212536 eV Total energy + Delta-G solvation = -2288.162041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55321 -34.94124 -33.17231 -32.60419 -30.24451 -27.86907 -26.54325 -25.14572 -23.13764 -21.63272 -20.17059 -18.06672 -17.00634 -16.23210 -15.37900 -14.63429 -14.55570 -14.26415 -13.76448 -13.64109 -13.10564 -12.53591 -12.18971 -12.06864 -11.94631 -11.50212 -11.46758 -11.29321 -11.05315 -10.72911 -10.56772 -10.17553 -9.86043 -9.79904 -9.64045 -9.12552 -8.51745 -8.41077 -7.69030 -6.03321 -4.01046 3.31558 3.39174 3.43882 4.28526 4.34923 4.46569 5.02877 5.21821 5.28375 5.31748 5.44298 5.53467 5.63172 5.76010 5.83682 5.89243 5.93909 6.02966 6.16973 6.22869 6.28598 6.34275 6.42467 6.50857 6.73086 6.80958 7.03181 7.19252 7.34862 7.41019 7.64056 7.72132 7.88875 8.54900 9.01206 9.59293 11.10165 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.008990 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.307998 B = 3113.853757 C = 3516.689422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.093 0.907 4 C 0.064 3.936 5 N -0.690 5.690 6 C 0.066 3.934 7 C 0.077 3.923 8 H 0.049 0.951 9 C -0.146 4.146 10 N -0.534 5.534 11 C 0.070 3.930 12 C -0.014 4.014 13 C -0.519 4.519 14 H 0.071 0.929 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.264 1.264 20 H -0.288 1.288 21 H 0.063 0.937 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.337 0.663 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.015 0.985 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.440 -12.384 11.080 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.032 4.032 3 H 0.111 0.889 4 C -0.065 4.065 5 N -0.320 5.320 6 C -0.063 4.063 7 C -0.032 4.032 8 H 0.066 0.934 9 C -0.204 4.204 10 N -0.259 5.259 11 C -0.056 4.056 12 C -0.051 4.051 13 C -0.558 4.558 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.188 1.188 20 H -0.214 1.214 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.154 0.846 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.033 0.967 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.345 -12.059 10.726 16.195 hybrid contribution 0.380 0.570 0.829 1.076 sum 1.725 -11.488 11.555 16.385 Atomic orbital electron populations 1.22307 0.97058 1.02187 1.01867 1.21808 0.93664 0.98424 0.89323 0.88874 1.22042 0.97584 0.88819 0.98099 1.60484 1.63737 1.03125 1.04663 1.22013 0.97580 0.96764 0.89968 1.21645 0.97865 0.89501 0.94146 0.93355 1.21841 1.01764 0.99266 0.97492 1.62520 1.59220 1.01051 1.03068 1.22116 0.97586 0.95767 0.90161 1.19714 0.97008 0.90950 0.97441 1.21081 1.41693 0.92413 1.00573 0.91124 1.24993 0.94962 0.97705 0.95684 1.69915 1.48362 1.08921 1.27104 0.86797 0.79911 0.79598 0.83153 1.20333 1.18841 1.21403 0.91844 0.93074 0.92065 0.90833 0.94650 0.84645 0.91040 0.94610 0.92106 0.92789 0.91817 0.95414 0.91276 0.95953 0.96694 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.16 37.16 0.30 -2.59 16 2 C 0.08 1.29 2.42 -67.65 -0.16 1.13 16 3 H 0.09 1.73 5.99 -51.93 -0.31 1.42 16 4 C 0.06 0.88 6.15 -3.77 -0.02 0.86 16 5 N -0.69 -8.56 6.22 -113.64 -0.71 -9.27 16 6 C 0.07 0.84 6.00 -3.77 -0.02 0.82 16 7 C 0.08 1.16 2.14 -67.66 -0.14 1.01 16 8 H 0.05 0.78 6.35 -51.93 -0.33 0.45 16 9 C -0.15 -1.97 8.87 37.16 0.33 -1.64 16 10 N -0.53 -9.47 4.62 -218.57 -1.01 -10.48 16 11 C 0.07 1.45 3.71 -3.83 -0.01 1.44 16 12 C -0.01 -0.33 3.21 -27.88 -0.09 -0.42 16 13 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 17 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H 0.06 1.02 5.94 -51.93 -0.31 0.71 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.14 6.34 -51.93 -0.33 0.81 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.34 3.35 8.90 -39.29 -0.35 3.00 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.93 6.59 -51.93 -0.34 0.59 16 32 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 33 H 0.07 1.45 6.86 -51.93 -0.36 1.09 16 34 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 35 H 0.01 0.36 5.12 -51.93 -0.27 0.09 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 268.49 15.07 4.05 4.05 Total: -1.00 -30.46 268.49 -7.70 -38.16 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.88 Total: 0.37 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -0.26 Total: -12.77 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.94 Total: -47.10 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.46 -7.70 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.642 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds