Wall clock time and date at job start Mon Mar 30 2020 02:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.51184 * 2 1 4 4 C 1.53053 * 109.48712 * 120.05653 * 2 1 3 5 5 N 1.46951 * 109.36898 * 61.56132 * 4 2 1 6 6 C 1.46964 * 110.87944 * 59.32085 * 5 4 2 7 7 C 1.53045 * 109.36354 * 300.68138 * 6 5 4 8 8 H 1.09006 * 109.48809 * 298.43414 * 7 6 5 9 9 C 1.53000 * 109.51006 * 178.37991 * 7 6 5 10 10 N 1.46959 * 109.36948 * 58.40121 * 7 6 5 11 11 C 1.46891 * 111.00406 * 176.81145 * 10 7 6 12 12 C 1.53007 * 109.47311 * 170.00056 * 11 10 7 13 13 C 1.50697 * 109.46894 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00599 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 H 1.08996 * 109.47338 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46529 * 300.05679 * 1 2 3 23 23 H 1.08996 * 109.46856 * 60.05555 * 1 2 3 24 24 H 1.08994 * 109.48908 * 301.59254 * 4 2 1 25 25 H 1.09001 * 109.50556 * 181.54125 * 4 2 1 26 26 H 1.00899 * 111.00317 * 183.18715 * 5 4 2 27 27 H 1.09001 * 109.48862 * 180.71310 * 6 5 4 28 28 H 1.09000 * 109.48979 * 60.64730 * 6 5 4 29 29 H 1.09005 * 109.46771 * 300.09867 * 9 7 6 30 30 H 1.09001 * 109.47161 * 60.09300 * 9 7 6 31 31 H 1.08995 * 109.47508 * 180.09489 * 9 7 6 32 32 H 1.09000 * 109.47319 * 49.99989 * 11 10 7 33 33 H 1.08999 * 109.47480 * 289.99766 * 11 10 7 34 34 H 1.08995 * 109.46729 * 60.00100 * 12 11 10 35 35 H 1.09007 * 109.46460 * 299.99955 * 12 11 10 36 36 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0406 -0.7227 1.2488 5 7 1.5808 -2.1182 1.2266 6 6 2.0710 -2.8121 0.0274 7 6 1.5605 -2.0896 -1.2214 8 1 0.4708 -2.1132 -1.2352 9 6 2.1020 -2.7855 -2.4717 10 7 2.0203 -0.6939 -1.1991 11 6 1.6134 0.0139 -2.4202 12 6 1.8856 1.5107 -2.2568 13 6 1.4676 2.2369 -3.5094 14 1 1.0493 1.6862 -4.3389 15 6 1.6183 3.6047 -3.5960 16 7 1.2540 4.2386 -4.6892 17 14 2.3411 4.5575 -2.1610 18 1 1.2488 4.9849 -1.2502 19 1 3.2924 3.6906 -1.4201 20 1 3.0566 5.7543 -2.6716 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5147 0.8895 23 1 -0.3633 0.5130 -0.8905 24 1 1.6544 -0.2268 2.1393 25 1 3.1302 -0.6990 1.2631 26 1 1.8602 -2.6045 2.0653 27 1 1.7070 -3.8396 0.0275 28 1 3.1610 -2.8122 0.0274 29 1 3.1918 -2.7623 -2.4571 30 1 1.7609 -3.8206 -2.4880 31 1 1.7395 -2.2694 -3.3606 32 1 0.5493 -0.1449 -2.5949 33 1 2.1818 -0.3681 -3.2682 34 1 2.9497 1.6695 -2.0822 35 1 1.3171 1.8928 -1.4088 36 1 1.3604 5.2007 -4.7502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068915075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:47 Heat of formation + Delta-G solvation = -19.617985 kcal Electronic energy + Delta-G solvation = -15116.376161 eV Core-core repulsion = 12827.212536 eV Total energy + Delta-G solvation = -2289.163625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83309 -36.37714 -34.81470 -34.17684 -32.04481 -29.35358 -27.63852 -26.76399 -24.72087 -22.88055 -21.86296 -19.39005 -19.03324 -17.51589 -16.76096 -16.33440 -15.90847 -15.62553 -15.26883 -15.09741 -14.62920 -14.35750 -13.57805 -13.36159 -13.28613 -13.12708 -12.86071 -12.66968 -12.45408 -12.17117 -12.02671 -11.86695 -11.63121 -11.55415 -11.23799 -11.13069 -10.76118 -9.43082 -9.09193 -8.31635 -6.35764 1.33279 1.35745 1.48248 2.34355 2.99870 3.03701 3.32042 3.88617 4.04183 4.09464 4.27388 4.36677 4.45367 4.50538 4.56748 4.66554 4.72839 4.79508 4.84586 4.86336 4.94579 5.00640 5.11359 5.16485 5.27838 5.35174 5.44008 5.47405 5.63247 5.97864 6.13096 6.26984 6.36322 6.58518 6.71847 7.28731 8.85218 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.008990 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.307998 B = 3113.853757 C = 3516.689422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.068 3.932 3 H 0.073 0.927 4 C 0.072 3.928 5 N -0.690 5.690 6 C 0.072 3.928 7 C 0.073 3.927 8 H 0.038 0.962 9 C -0.142 4.142 10 N -0.537 5.537 11 C 0.085 3.915 12 C -0.002 4.002 13 C -0.533 4.533 14 H 0.030 0.970 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.949 3.051 18 H -0.265 1.265 19 H -0.248 1.248 20 H -0.282 1.282 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.030 0.970 24 H 0.093 0.907 25 H 0.035 0.965 26 H 0.356 0.644 27 H 0.097 0.903 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.014 0.986 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.022 0.978 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 -13.466 13.812 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.041 4.041 3 H 0.091 0.909 4 C -0.057 4.057 5 N -0.323 5.323 6 C -0.057 4.057 7 C -0.036 4.036 8 H 0.056 0.944 9 C -0.200 4.200 10 N -0.262 5.262 11 C -0.042 4.042 12 C -0.040 4.040 13 C -0.571 4.571 14 H 0.049 0.951 15 C -0.190 4.190 16 N -0.591 5.591 17 Si 0.772 3.228 18 H -0.190 1.190 19 H -0.172 1.172 20 H -0.208 1.208 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.111 0.889 25 H 0.053 0.947 26 H 0.175 0.825 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.040 0.960 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.085 -13.175 13.479 18.964 hybrid contribution 0.094 0.844 -0.097 0.854 sum 2.180 -12.331 13.383 18.328 Atomic orbital electron populations 1.22205 0.96939 1.02210 1.01108 1.21898 0.93781 0.97992 0.90381 0.90863 1.21929 0.97460 0.89497 0.96848 1.60430 1.63734 1.02622 1.05503 1.21981 0.97547 0.97534 0.88670 1.21805 0.97406 0.88029 0.96332 0.94410 1.21817 1.01650 1.00539 0.95983 1.62514 1.59360 1.02339 1.01970 1.21765 0.96612 0.94034 0.91792 1.19552 0.96372 0.92838 0.95218 1.21403 1.41467 0.92945 1.01295 0.95141 1.25969 0.95335 0.98844 0.98807 1.70065 1.49872 1.09524 1.29591 0.85673 0.79624 0.78081 0.79416 1.18968 1.17153 1.20758 0.91382 0.91459 0.95104 0.88883 0.94718 0.82480 0.88478 0.94573 0.92109 0.89941 0.93841 0.96743 0.92137 0.96353 0.95980 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.26 8.16 71.98 0.59 -4.67 16 2 C 0.07 2.19 2.42 44.92 0.11 2.30 16 3 H 0.07 2.63 5.99 -2.39 -0.01 2.61 16 4 C 0.07 1.76 6.15 86.31 0.53 2.29 16 5 N -0.69 -14.62 6.22 -513.44 -3.19 -17.81 16 6 C 0.07 1.58 6.00 86.31 0.52 2.10 16 7 C 0.07 2.06 2.14 44.92 0.10 2.15 16 8 H 0.04 1.16 6.35 -2.38 -0.02 1.15 16 9 C -0.14 -3.64 8.87 71.98 0.64 -3.00 16 10 N -0.54 -18.57 4.62 -845.41 -3.91 -22.48 16 11 C 0.09 3.61 3.71 86.31 0.32 3.93 16 12 C 0.00 -0.11 3.21 29.85 0.10 -0.01 16 13 C -0.53 -31.71 9.66 25.60 0.25 -31.46 16 14 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 15 C 0.01 0.44 5.47 84.65 0.46 0.90 16 16 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 17 Si 0.95 45.23 27.47 68.60 1.88 47.12 16 18 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 21 H 0.07 2.08 5.94 -2.39 -0.01 2.06 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.03 1.14 6.34 -2.39 -0.02 1.12 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.36 5.55 8.90 -89.69 -0.80 4.75 16 27 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.27 6.59 -2.39 -0.02 1.26 16 32 H 0.01 0.64 7.08 -2.39 -0.02 0.62 16 33 H 0.06 2.62 6.86 -2.39 -0.02 2.60 16 34 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 35 H 0.02 1.05 5.12 -2.38 -0.01 1.04 16 36 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -66.73 268.49 -1.11 -67.84 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.20 Total: 11.16 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 3.61 Total: -25.47 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -6.80 Total: -100.65 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.12 kcal Total: -66.73 -1.11 -67.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.221 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds