Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.50301 * 2 1 4 4 C 1.53048 * 109.49092 * 239.93920 * 2 1 3 5 5 N 1.46955 * 109.36675 * 181.62826 * 4 2 1 6 6 C 1.46965 * 110.87706 * 59.32166 * 5 4 2 7 7 C 1.53048 * 109.36412 * 300.67991 * 6 5 4 8 8 H 1.08997 * 109.48885 * 178.36591 * 7 6 5 9 9 C 1.52999 * 109.51039 * 298.42010 * 7 6 5 10 10 N 1.46955 * 109.48892 * 120.04747 * 2 1 3 11 11 C 1.46905 * 111.00214 * 303.16048 * 10 2 1 12 12 C 1.52998 * 109.47264 * 170.61045 * 11 10 2 13 13 C 1.50693 * 109.47544 * 184.58604 * 12 11 10 14 14 H 1.08012 * 119.99522 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00417 * 179.97438 * 13 12 11 16 16 N 1.31506 * 119.99940 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99914 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47160 * 89.99786 * 17 15 13 19 19 H 1.48498 * 109.46888 * 209.99791 * 17 15 13 20 20 H 1.48505 * 109.47290 * 330.00148 * 17 15 13 21 21 H 1.09003 * 109.47079 * 306.75986 * 1 2 3 22 22 H 1.09003 * 109.47345 * 66.75685 * 1 2 3 23 23 H 1.09003 * 109.47283 * 186.75970 * 1 2 3 24 24 H 1.09007 * 109.48405 * 61.66479 * 4 2 1 25 25 H 1.08994 * 109.48983 * 301.60303 * 4 2 1 26 26 H 1.00893 * 110.99915 * 183.19213 * 5 4 2 27 27 H 1.08999 * 109.48430 * 180.71100 * 6 5 4 28 28 H 1.08997 * 109.48557 * 60.64688 * 6 5 4 29 29 H 1.08993 * 109.47155 * 179.90083 * 9 7 6 30 30 H 1.08993 * 109.47092 * 299.90758 * 9 7 6 31 31 H 1.09007 * 109.46787 * 59.90158 * 9 7 6 32 32 H 1.09000 * 109.47070 * 50.60630 * 11 10 2 33 33 H 1.09002 * 109.46690 * 290.60689 * 11 10 2 34 34 H 1.09005 * 109.46940 * 304.58463 * 12 11 10 35 35 H 1.09005 * 109.47377 * 64.58219 * 12 11 10 36 36 H 0.96995 * 120.00300 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7227 -1.2487 5 7 3.5097 -0.7553 -1.2264 6 6 4.0000 -1.4490 -0.0271 7 6 3.4893 -0.7263 1.2216 8 1 3.8277 -1.2559 2.1121 9 6 4.0314 0.7043 1.2416 10 7 2.0203 -0.6937 1.1992 11 6 1.4887 -0.0737 2.4203 12 6 1.8247 -0.9529 3.6265 13 6 1.1840 -0.3764 4.8626 14 1 0.5962 0.5272 4.7947 15 6 1.3481 -1.0022 6.0801 16 7 2.0633 -2.1026 6.1627 17 14 0.5543 -0.2870 7.6124 18 1 -0.8046 -0.8618 7.7803 19 1 1.3823 -0.6188 8.7996 20 1 0.4541 1.1884 7.4754 21 1 -0.3633 0.6150 0.8233 22 1 -0.3634 0.4056 -0.9443 23 1 -0.3634 -1.0205 0.1210 24 1 1.7022 -0.1931 -2.1393 25 1 1.6544 -1.7418 -1.2625 26 1 3.8746 -1.1811 -2.0651 27 1 5.0899 -1.4490 -0.0272 28 1 3.6360 -2.4764 -0.0271 29 1 3.6660 1.2189 2.1302 30 1 5.1209 0.6797 1.2582 31 1 3.6935 1.2333 0.3505 32 1 0.4069 0.0280 2.3349 33 1 1.9369 0.9111 2.5525 34 1 1.4464 -1.9612 3.4578 35 1 2.9059 -0.9883 3.7605 36 1 2.1791 -2.5427 7.0193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068915078.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -0.583135 kcal Electronic energy + Delta-G solvation = -14986.531598 eV Core-core repulsion = 12698.193386 eV Total energy + Delta-G solvation = -2288.338212 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40102 -34.76037 -33.04510 -32.67796 -29.93330 -27.54274 -26.47742 -25.01937 -23.23819 -21.47034 -20.28684 -18.04275 -16.63072 -16.04260 -15.32708 -14.65261 -14.44851 -14.33765 -13.79724 -13.34033 -13.01427 -12.21926 -12.09736 -11.97289 -11.84480 -11.40569 -11.23713 -11.20977 -10.93653 -10.69278 -10.52321 -10.45627 -10.01509 -9.65655 -9.26730 -9.05610 -8.34299 -8.29053 -7.55985 -5.96776 -3.98763 3.33654 3.39722 3.42962 4.36224 4.39236 4.55910 5.11132 5.29114 5.36642 5.39492 5.52067 5.61562 5.71108 5.82888 5.90343 5.95605 5.99810 6.09809 6.24476 6.30843 6.38348 6.44708 6.48283 6.65950 6.81643 7.06508 7.11843 7.41139 7.63343 7.67565 7.86910 7.96264 8.13555 8.47817 9.08604 9.64646 11.14645 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046135 B = 0.007590 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.768151 B = 3688.120426 C = 3972.137626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 H 0.045 0.955 4 C 0.066 3.934 5 N -0.690 5.690 6 C 0.065 3.935 7 C 0.080 3.920 8 H 0.094 0.906 9 C -0.174 4.174 10 N -0.529 5.529 11 C 0.056 3.944 12 C 0.030 3.970 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.336 0.664 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.015 0.985 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 2.772 -13.439 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 H 0.063 0.937 4 C -0.063 4.063 5 N -0.321 5.321 6 C -0.065 4.065 7 C -0.029 4.029 8 H 0.112 0.888 9 C -0.233 4.233 10 N -0.253 5.253 11 C -0.070 4.070 12 C -0.008 4.008 13 C -0.559 4.559 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.153 0.847 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.033 0.967 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.471 2.779 -13.050 13.423 hybrid contribution -0.293 0.216 0.760 0.842 sum 1.177 2.995 -12.290 12.705 Atomic orbital electron populations 1.21858 0.94633 1.02723 1.01117 1.21618 0.94792 0.96234 0.90603 0.93693 1.22009 0.87558 0.99250 0.97518 1.60499 1.08663 1.58089 1.04812 1.22030 0.98953 0.95526 0.89981 1.21737 0.88085 0.95525 0.97526 0.88809 1.22283 1.00636 0.98513 1.01882 1.62520 1.07082 1.53475 1.02269 1.22435 0.98782 0.96499 0.89307 1.19064 0.96674 0.95205 0.89808 1.21203 1.31779 1.10112 0.92796 0.92874 1.24985 0.95380 0.94973 0.98961 1.69967 1.39870 1.18309 1.25141 0.86617 0.79301 0.79410 0.82798 1.20674 1.21250 1.19950 0.92043 0.92905 0.91825 0.91183 0.94562 0.84730 0.90883 0.94506 0.92476 0.93073 0.91957 0.91683 0.95892 0.95876 0.96720 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.66 37.16 0.32 -1.75 16 2 C 0.08 1.20 2.18 -67.66 -0.15 1.05 16 3 H 0.05 0.74 6.35 -51.93 -0.33 0.41 16 4 C 0.07 0.89 6.00 -3.77 -0.02 0.86 16 5 N -0.69 -8.98 6.22 -113.64 -0.71 -9.68 16 6 C 0.06 0.94 6.15 -3.76 -0.02 0.91 16 7 C 0.08 1.41 2.76 -67.66 -0.19 1.22 16 8 H 0.09 1.87 6.41 -51.93 -0.33 1.53 16 9 C -0.17 -2.89 8.38 37.16 0.31 -2.58 16 10 N -0.53 -9.88 4.48 -218.57 -0.98 -10.86 16 11 C 0.06 1.21 4.46 -3.82 -0.02 1.20 16 12 C 0.03 0.79 4.77 -27.89 -0.13 0.65 16 13 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 14 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.06 0.93 6.55 -51.93 -0.34 0.58 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.34 3.53 8.90 -39.30 -0.35 3.18 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.04 6.36 -51.93 -0.33 0.71 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.01 5.95 -51.93 -0.31 0.70 16 32 H 0.06 1.39 5.91 -51.93 -0.31 1.08 16 33 H 0.02 0.50 6.13 -51.93 -0.32 0.18 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.01 0.41 6.70 -51.93 -0.35 0.06 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 273.21 15.07 4.12 4.12 Total: -1.00 -30.09 273.21 -8.05 -38.14 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.89 Total: -0.12 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -0.31 Total: -12.06 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.95 Total: -46.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.09 -8.05 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915078.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.555 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds