Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.50301 * 2 1 4 4 C 1.53048 * 109.49092 * 239.93920 * 2 1 3 5 5 N 1.46955 * 109.36675 * 181.62826 * 4 2 1 6 6 C 1.46965 * 110.87706 * 59.32166 * 5 4 2 7 7 C 1.53048 * 109.36412 * 300.67991 * 6 5 4 8 8 H 1.08997 * 109.48885 * 178.36591 * 7 6 5 9 9 C 1.52999 * 109.51039 * 298.42010 * 7 6 5 10 10 N 1.46955 * 109.48892 * 120.04747 * 2 1 3 11 11 C 1.46905 * 111.00214 * 303.16048 * 10 2 1 12 12 C 1.52998 * 109.47264 * 170.61045 * 11 10 2 13 13 C 1.50693 * 109.47544 * 184.58604 * 12 11 10 14 14 H 1.08012 * 119.99522 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00417 * 179.97438 * 13 12 11 16 16 N 1.31506 * 119.99940 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99914 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47160 * 89.99786 * 17 15 13 19 19 H 1.48498 * 109.46888 * 209.99791 * 17 15 13 20 20 H 1.48505 * 109.47290 * 330.00148 * 17 15 13 21 21 H 1.09003 * 109.47079 * 306.75986 * 1 2 3 22 22 H 1.09003 * 109.47345 * 66.75685 * 1 2 3 23 23 H 1.09003 * 109.47283 * 186.75970 * 1 2 3 24 24 H 1.09007 * 109.48405 * 61.66479 * 4 2 1 25 25 H 1.08994 * 109.48983 * 301.60303 * 4 2 1 26 26 H 1.00893 * 110.99915 * 183.19213 * 5 4 2 27 27 H 1.08999 * 109.48430 * 180.71100 * 6 5 4 28 28 H 1.08997 * 109.48557 * 60.64688 * 6 5 4 29 29 H 1.08993 * 109.47155 * 179.90083 * 9 7 6 30 30 H 1.08993 * 109.47092 * 299.90758 * 9 7 6 31 31 H 1.09007 * 109.46787 * 59.90158 * 9 7 6 32 32 H 1.09000 * 109.47070 * 50.60630 * 11 10 2 33 33 H 1.09002 * 109.46690 * 290.60689 * 11 10 2 34 34 H 1.09005 * 109.46940 * 304.58463 * 12 11 10 35 35 H 1.09005 * 109.47377 * 64.58219 * 12 11 10 36 36 H 0.96995 * 120.00300 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7227 -1.2487 5 7 3.5097 -0.7553 -1.2264 6 6 4.0000 -1.4490 -0.0271 7 6 3.4893 -0.7263 1.2216 8 1 3.8277 -1.2559 2.1121 9 6 4.0314 0.7043 1.2416 10 7 2.0203 -0.6937 1.1992 11 6 1.4887 -0.0737 2.4203 12 6 1.8247 -0.9529 3.6265 13 6 1.1840 -0.3764 4.8626 14 1 0.5962 0.5272 4.7947 15 6 1.3481 -1.0022 6.0801 16 7 2.0633 -2.1026 6.1627 17 14 0.5543 -0.2870 7.6124 18 1 -0.8046 -0.8618 7.7803 19 1 1.3823 -0.6188 8.7996 20 1 0.4541 1.1884 7.4754 21 1 -0.3633 0.6150 0.8233 22 1 -0.3634 0.4056 -0.9443 23 1 -0.3634 -1.0205 0.1210 24 1 1.7022 -0.1931 -2.1393 25 1 1.6544 -1.7418 -1.2625 26 1 3.8746 -1.1811 -2.0651 27 1 5.0899 -1.4490 -0.0272 28 1 3.6360 -2.4764 -0.0271 29 1 3.6660 1.2189 2.1302 30 1 5.1209 0.6797 1.2582 31 1 3.6935 1.2333 0.3505 32 1 0.4069 0.0280 2.3349 33 1 1.9369 0.9111 2.5525 34 1 1.4464 -1.9612 3.4578 35 1 2.9059 -0.9883 3.7605 36 1 2.1791 -2.5427 7.0193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068915078.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -22.558929 kcal Electronic energy + Delta-G solvation = -14987.484540 eV Core-core repulsion = 12698.193386 eV Total energy + Delta-G solvation = -2289.291154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74838 -36.29160 -34.83480 -34.13048 -31.77212 -29.11015 -27.65282 -26.74577 -24.90169 -22.76856 -22.04638 -19.41214 -18.59033 -17.48255 -16.78040 -16.53036 -15.89228 -15.61094 -15.21184 -14.89833 -14.39840 -14.17454 -13.59009 -13.36729 -13.19035 -13.04746 -12.80307 -12.70734 -12.46812 -12.39679 -12.07587 -11.99607 -11.51076 -11.47143 -11.11756 -11.07582 -10.52912 -9.44215 -9.03766 -8.20261 -6.31621 1.39018 1.40813 1.51750 2.39700 3.06197 3.12828 3.31003 3.90122 4.02549 4.11445 4.27834 4.38736 4.47128 4.55525 4.60169 4.66196 4.71915 4.84471 4.85629 4.88514 5.02405 5.11467 5.15512 5.17042 5.30114 5.44167 5.48679 5.67231 5.80692 5.96263 6.13979 6.33905 6.41839 6.58114 6.85486 7.37378 8.91892 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046135 B = 0.007590 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.768151 B = 3688.120426 C = 3972.137626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.042 0.958 4 C 0.071 3.929 5 N -0.687 5.687 6 C 0.074 3.926 7 C 0.074 3.926 8 H 0.058 0.942 9 C -0.162 4.162 10 N -0.541 5.541 11 C 0.075 3.925 12 C 0.042 3.958 13 C -0.544 4.544 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.264 1.264 21 H 0.048 0.952 22 H 0.085 0.915 23 H 0.052 0.948 24 H 0.100 0.900 25 H 0.031 0.969 26 H 0.355 0.645 27 H 0.093 0.907 28 H 0.028 0.972 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.020 0.980 34 H -0.012 1.012 35 H -0.010 1.010 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 3.828 -14.682 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.060 0.940 4 C -0.059 4.059 5 N -0.319 5.319 6 C -0.056 4.056 7 C -0.035 4.035 8 H 0.076 0.924 9 C -0.221 4.221 10 N -0.266 5.266 11 C -0.052 4.052 12 C 0.004 3.996 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.188 1.188 21 H 0.067 0.933 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.049 0.951 26 H 0.175 0.825 27 H 0.111 0.889 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.083 3.837 -14.329 14.873 hybrid contribution -0.143 -0.142 1.105 1.124 sum 0.940 3.695 -13.223 13.762 Atomic orbital electron populations 1.21835 0.93620 1.02055 1.02433 1.21787 0.95725 0.96020 0.90039 0.94030 1.22008 0.87675 0.99029 0.97181 1.60451 1.08548 1.57918 1.04968 1.21890 0.99985 0.94531 0.89211 1.21746 0.87589 0.96228 0.97946 0.92366 1.22158 1.01502 0.97430 1.01003 1.62452 1.07928 1.53908 1.02270 1.22037 0.98891 0.95181 0.89129 1.18853 0.94656 0.94230 0.91816 1.21625 1.32157 1.10517 0.93975 0.92347 1.25960 0.95782 0.95228 1.02655 1.70107 1.41081 1.19697 1.26237 0.85441 0.78406 0.79035 0.78113 1.19672 1.20635 1.18777 0.93335 0.89578 0.92850 0.88144 0.95059 0.82519 0.88915 0.95385 0.94895 0.91515 0.91055 0.91523 0.96198 0.99322 0.99220 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 8.66 71.98 0.62 -3.19 16 2 C 0.07 2.17 2.18 44.92 0.10 2.26 16 3 H 0.04 1.29 6.35 -2.39 -0.02 1.27 16 4 C 0.07 1.69 6.00 86.31 0.52 2.20 16 5 N -0.69 -15.89 6.22 -513.43 -3.19 -19.09 16 6 C 0.07 2.04 6.15 86.31 0.53 2.57 16 7 C 0.07 2.62 2.76 44.92 0.12 2.75 16 8 H 0.06 2.46 6.41 -2.39 -0.02 2.44 16 9 C -0.16 -5.30 8.38 71.98 0.60 -4.70 16 10 N -0.54 -20.42 4.48 -845.43 -3.79 -24.21 16 11 C 0.07 3.33 4.46 86.30 0.38 3.71 16 12 C 0.04 2.32 4.77 29.85 0.14 2.46 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.29 7.74 -2.90 -0.02 3.26 16 15 C 0.00 0.10 5.46 84.66 0.46 0.56 16 16 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 17 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H 0.05 1.41 6.55 -2.39 -0.02 1.40 16 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 25 H 0.03 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.36 6.21 8.90 -89.70 -0.80 5.41 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.03 1.21 6.36 -2.39 -0.02 1.19 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.19 5.95 -2.38 -0.01 2.18 16 32 H 0.07 2.91 5.91 -2.39 -0.01 2.89 16 33 H 0.02 0.89 6.13 -2.39 -0.01 0.88 16 34 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 35 H -0.01 -0.63 6.70 -2.38 -0.02 -0.64 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -65.99 273.21 -0.70 -66.69 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.25 Total: 10.26 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.72 Total: -23.10 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -6.70 Total: -100.96 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.99 -0.70 -66.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915078.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.127 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds