Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48258 * 2 1 4 4 C 1.53046 * 109.48853 * 239.95902 * 2 1 3 5 5 N 1.46955 * 109.36415 * 181.60900 * 4 2 1 6 6 C 1.46908 * 110.99905 * 183.18553 * 5 4 2 7 7 C 1.52995 * 109.46877 * 66.20228 * 6 5 4 8 8 C 1.50697 * 109.46905 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00485 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00177 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99834 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00141 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47265 * 60.00450 * 12 10 8 14 14 H 1.48501 * 109.46942 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47161 * 300.00132 * 12 10 8 16 16 C 1.46961 * 110.88014 * 59.32104 * 5 4 2 17 17 C 1.53051 * 109.35983 * 300.67671 * 16 5 4 18 18 H 1.08997 * 109.49405 * 298.41316 * 17 16 5 19 19 C 1.53006 * 109.48767 * 178.36887 * 17 16 5 20 20 N 1.46952 * 109.50762 * 120.03241 * 2 1 3 21 21 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47084 * 300.04201 * 1 2 3 23 23 H 1.08999 * 109.47366 * 60.04392 * 1 2 3 24 24 H 1.09002 * 109.49563 * 61.63872 * 4 2 1 25 25 H 1.09001 * 109.48747 * 301.57254 * 4 2 1 26 26 H 1.08994 * 109.46788 * 186.19967 * 6 5 4 27 27 H 1.09001 * 109.46899 * 306.19774 * 6 5 4 28 28 H 1.09003 * 109.46969 * 299.99498 * 7 6 5 29 29 H 1.08995 * 109.47239 * 59.99594 * 7 6 5 30 30 H 0.97002 * 120.00022 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.48864 * 180.71370 * 16 5 4 32 32 H 1.08995 * 109.49001 * 60.64339 * 16 5 4 33 33 H 1.09001 * 109.47002 * 60.04324 * 19 17 16 34 34 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 35 35 H 1.09000 * 109.47050 * 300.04590 * 19 17 16 36 36 H 1.00899 * 110.98326 * 55.41906 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5097 -0.7545 -1.2269 6 6 4.0411 -1.3742 -2.4483 7 6 3.7178 -0.4872 -3.6523 8 6 4.2635 -1.1226 -4.9051 9 1 4.7880 -2.0650 -4.8483 10 6 4.0923 -0.5014 -6.1240 11 7 3.4531 0.6460 -6.1933 12 14 4.7680 -1.2893 -7.6770 13 1 4.1471 -2.6252 -7.8649 14 1 4.4544 -0.4284 -8.8456 15 1 6.2403 -1.4405 -7.5551 16 6 4.0004 -1.4483 -0.0279 17 6 3.4898 -0.7259 1.2210 18 1 3.8760 0.2933 1.2352 19 6 3.9653 -1.4693 2.4710 20 7 2.0208 -0.6933 1.1992 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5145 0.8896 23 1 -0.3634 0.5131 -0.8904 24 1 1.7018 -0.1928 -2.1395 25 1 1.6547 -1.7416 -1.2628 26 1 5.1216 -1.4854 -2.3586 27 1 3.5851 -2.3546 -2.5862 28 1 2.6372 -0.3760 -3.7419 29 1 4.1738 0.4931 -3.5142 30 1 3.3329 1.0832 -7.0508 31 1 5.0904 -1.4479 -0.0281 32 1 3.6367 -2.4758 -0.0279 33 1 5.0549 -1.4940 2.4865 34 1 3.6011 -0.9549 3.3602 35 1 3.5789 -2.4884 2.4566 36 1 1.6374 -1.6246 1.2604 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069629128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -11.921632 kcal Electronic energy + Delta-G solvation = -14585.377455 eV Core-core repulsion = 12296.547569 eV Total energy + Delta-G solvation = -2288.829886 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26306 -35.05010 -33.36627 -32.77335 -29.50039 -28.10496 -26.37398 -25.26586 -22.75194 -21.07315 -20.34446 -19.87270 -16.46718 -15.33828 -15.16586 -14.92295 -14.73214 -14.40833 -13.75562 -13.43325 -12.71265 -12.61700 -12.41096 -12.22248 -11.67380 -11.54445 -11.41586 -11.20938 -10.94175 -10.85939 -10.71080 -10.65546 -10.54182 -9.84211 -9.44756 -9.14697 -8.35109 -8.24318 -7.72972 -6.00375 -4.03105 3.32603 3.36994 3.39289 4.21330 4.34162 4.50064 5.04983 5.23245 5.25350 5.35306 5.36518 5.45174 5.51595 5.61678 5.77382 5.81033 5.84158 5.98656 6.09881 6.13597 6.21443 6.27872 6.33897 6.43188 6.47616 6.94235 7.15062 7.43391 7.52917 7.55195 7.77603 7.87971 8.06659 8.42226 9.03709 9.60477 11.10962 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046141 B = 0.006609 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.690955 B = 4235.694847 C = 4675.088559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.088 0.912 4 C 0.024 3.976 5 N -0.536 5.536 6 C 0.063 3.937 7 C 0.029 3.971 8 C -0.524 4.524 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.022 3.978 17 C 0.085 3.915 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.679 5.679 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -3.203 13.911 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 H 0.106 0.894 4 C -0.106 4.106 5 N -0.260 5.260 6 C -0.063 4.063 7 C -0.008 4.008 8 C -0.563 4.563 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.108 4.108 17 C -0.026 4.026 18 H 0.106 0.894 19 C -0.200 4.200 20 N -0.308 5.308 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.646 -2.012 14.205 14.589 hybrid contribution 0.317 -2.000 -1.790 2.703 sum -2.330 -4.012 12.415 13.254 Atomic orbital electron populations 1.21763 0.94352 1.01723 1.02192 1.21642 0.94623 0.99090 0.87243 0.89364 1.22873 0.88599 0.98851 1.00296 1.62202 1.07608 1.53788 1.02395 1.22346 0.98368 0.96160 0.89440 1.19076 0.96923 0.95122 0.89674 1.21153 1.36310 1.06760 0.92046 0.92914 1.24991 0.95282 0.94919 0.99054 1.69964 1.41719 1.16159 1.25370 0.86649 0.79497 0.79177 0.82612 1.20313 1.21214 1.20216 1.22850 1.00789 0.95167 0.92019 1.21616 0.87640 1.00355 0.92943 0.89419 1.21768 1.00874 0.99883 0.97479 1.60983 1.07175 1.22867 1.39821 0.93112 0.91947 0.91750 0.89126 0.95849 0.92130 0.96461 0.96560 0.95717 0.92911 0.90735 0.95855 0.92106 0.91839 0.93090 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.45 37.16 0.35 -1.36 16 2 C 0.08 1.21 3.20 -67.66 -0.22 0.99 16 3 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.02 0.41 4.69 -3.77 -0.02 0.39 16 5 N -0.54 -10.10 4.71 -234.46 -1.10 -11.20 16 6 C 0.06 1.39 4.90 -3.82 -0.02 1.37 16 7 C 0.03 0.78 4.91 -27.89 -0.14 0.64 16 8 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 9 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 12 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.02 0.34 4.89 -3.76 -0.02 0.32 16 17 C 0.08 1.12 3.20 -67.65 -0.22 0.90 16 18 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.14 -1.47 9.45 37.16 0.35 -1.12 16 20 N -0.68 -8.92 6.21 -99.61 -0.62 -9.54 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 1.78 6.34 -51.93 -0.33 1.45 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 27 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.02 0.45 6.49 -51.93 -0.34 0.11 16 29 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 31 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.33 4.09 8.70 -39.29 -0.34 3.74 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -29.86 285.68 -8.49 -38.35 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.46 Total: -0.72 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.33 Total: -11.64 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.99 Total: -47.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.86 -8.49 -38.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.432 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds