Wall clock time and date at job start Mon Mar 30 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48258 * 2 1 4 4 C 1.53046 * 109.48853 * 239.95902 * 2 1 3 5 5 N 1.46955 * 109.36415 * 181.60900 * 4 2 1 6 6 C 1.46908 * 110.99905 * 183.18553 * 5 4 2 7 7 C 1.52995 * 109.46877 * 66.20228 * 6 5 4 8 8 C 1.50697 * 109.46905 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00485 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00177 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99834 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00141 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47265 * 60.00450 * 12 10 8 14 14 H 1.48501 * 109.46942 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47161 * 300.00132 * 12 10 8 16 16 C 1.46961 * 110.88014 * 59.32104 * 5 4 2 17 17 C 1.53051 * 109.35983 * 300.67671 * 16 5 4 18 18 H 1.08997 * 109.49405 * 298.41316 * 17 16 5 19 19 C 1.53006 * 109.48767 * 178.36887 * 17 16 5 20 20 N 1.46952 * 109.50762 * 120.03241 * 2 1 3 21 21 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47084 * 300.04201 * 1 2 3 23 23 H 1.08999 * 109.47366 * 60.04392 * 1 2 3 24 24 H 1.09002 * 109.49563 * 61.63872 * 4 2 1 25 25 H 1.09001 * 109.48747 * 301.57254 * 4 2 1 26 26 H 1.08994 * 109.46788 * 186.19967 * 6 5 4 27 27 H 1.09001 * 109.46899 * 306.19774 * 6 5 4 28 28 H 1.09003 * 109.46969 * 299.99498 * 7 6 5 29 29 H 1.08995 * 109.47239 * 59.99594 * 7 6 5 30 30 H 0.97002 * 120.00022 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.48864 * 180.71370 * 16 5 4 32 32 H 1.08995 * 109.49001 * 60.64339 * 16 5 4 33 33 H 1.09001 * 109.47002 * 60.04324 * 19 17 16 34 34 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 35 35 H 1.09000 * 109.47050 * 300.04590 * 19 17 16 36 36 H 1.00899 * 110.98326 * 55.41906 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5097 -0.7545 -1.2269 6 6 4.0411 -1.3742 -2.4483 7 6 3.7178 -0.4872 -3.6523 8 6 4.2635 -1.1226 -4.9051 9 1 4.7880 -2.0650 -4.8483 10 6 4.0923 -0.5014 -6.1240 11 7 3.4531 0.6460 -6.1933 12 14 4.7680 -1.2893 -7.6770 13 1 4.1471 -2.6252 -7.8649 14 1 4.4544 -0.4284 -8.8456 15 1 6.2403 -1.4405 -7.5551 16 6 4.0004 -1.4483 -0.0279 17 6 3.4898 -0.7259 1.2210 18 1 3.8760 0.2933 1.2352 19 6 3.9653 -1.4693 2.4710 20 7 2.0208 -0.6933 1.1992 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5145 0.8896 23 1 -0.3634 0.5131 -0.8904 24 1 1.7018 -0.1928 -2.1395 25 1 1.6547 -1.7416 -1.2628 26 1 5.1216 -1.4854 -2.3586 27 1 3.5851 -2.3546 -2.5862 28 1 2.6372 -0.3760 -3.7419 29 1 4.1738 0.4931 -3.5142 30 1 3.3329 1.0832 -7.0508 31 1 5.0904 -1.4479 -0.0281 32 1 3.6367 -2.4758 -0.0279 33 1 5.0549 -1.4940 2.4865 34 1 3.6011 -0.9549 3.3602 35 1 3.5789 -2.4884 2.4566 36 1 1.6374 -1.6246 1.2604 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:42 Heat of formation + Delta-G solvation = -33.262595 kcal Electronic energy + Delta-G solvation = -14586.302869 eV Core-core repulsion = 12296.547569 eV Total energy + Delta-G solvation = -2289.755300 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56297 -36.64603 -34.83678 -34.45204 -31.44923 -29.09226 -27.59700 -27.12420 -24.46485 -22.30645 -21.68646 -21.45848 -18.62941 -16.64763 -16.61180 -16.45129 -16.31272 -15.86670 -15.07640 -14.90669 -14.36684 -14.07248 -13.71995 -13.48547 -13.26049 -12.87684 -12.77052 -12.74899 -12.44845 -12.39677 -12.11736 -11.95988 -11.78881 -11.76626 -11.35590 -11.30862 -10.57433 -9.51738 -9.17880 -8.23114 -6.35483 1.38048 1.41545 1.49666 2.37597 2.90771 3.09845 3.20495 3.88305 4.01963 4.05510 4.15854 4.25720 4.40758 4.44808 4.54098 4.62536 4.67527 4.74531 4.78222 4.91148 4.98265 5.01483 5.15488 5.26084 5.29668 5.32206 5.40581 5.59171 5.72906 5.97802 6.03598 6.22787 6.27220 6.47536 6.80832 7.33849 8.88888 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046141 B = 0.006609 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.690955 B = 4235.694847 C = 4675.088559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.092 3.908 3 H 0.073 0.927 4 C 0.027 3.973 5 N -0.551 5.551 6 C 0.080 3.920 7 C 0.039 3.961 8 C -0.549 4.549 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.968 3.032 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.023 3.977 17 C 0.088 3.912 18 H 0.075 0.925 19 C -0.133 4.133 20 N -0.670 5.670 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.016 0.984 28 H -0.007 1.007 29 H -0.009 1.009 30 H 0.265 0.735 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -4.525 14.825 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.018 4.018 3 H 0.091 0.909 4 C -0.103 4.103 5 N -0.275 5.275 6 C -0.047 4.047 7 C 0.002 3.998 8 C -0.588 4.588 9 H 0.077 0.923 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.792 3.208 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.191 1.191 16 C -0.107 4.107 17 C -0.022 4.022 18 H 0.093 0.907 19 C -0.191 4.191 20 N -0.300 5.300 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.394 -3.347 15.150 15.699 hybrid contribution 0.227 -1.553 -2.042 2.575 sum -2.167 -4.900 13.108 14.161 Atomic orbital electron populations 1.21712 0.92309 1.02571 1.02741 1.21550 0.96177 0.97907 0.86213 0.90876 1.22872 0.87852 0.98904 1.00683 1.62124 1.08536 1.54354 1.02481 1.21980 0.98562 0.94907 0.89300 1.18885 0.94949 0.94323 0.91691 1.21582 1.36711 1.07254 0.93211 0.92275 1.25984 0.95326 0.95357 1.02905 1.70107 1.42785 1.17683 1.26494 0.85458 0.79130 0.78421 0.77770 1.19146 1.20609 1.19087 1.22972 1.01116 0.95413 0.91189 1.21640 0.87515 0.99864 0.93199 0.90667 1.21703 1.01570 0.99919 0.95883 1.60988 1.07207 1.23385 1.38411 0.92105 0.90433 0.92164 0.92346 0.95622 0.91876 0.96612 0.98861 0.99086 0.92645 0.90307 0.95237 0.91060 0.90963 0.92188 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.45 71.98 0.68 -2.41 16 2 C 0.09 2.60 3.20 44.92 0.14 2.75 16 3 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.03 0.94 4.69 86.31 0.40 1.35 16 5 N -0.55 -20.97 4.71 -895.71 -4.22 -25.19 16 6 C 0.08 3.56 4.90 86.30 0.42 3.99 16 7 C 0.04 2.16 4.91 29.85 0.15 2.30 16 8 C -0.55 -32.15 9.11 25.60 0.23 -31.92 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 10 C 0.00 0.15 5.46 84.65 0.46 0.61 16 11 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 12 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 C 0.02 0.67 4.89 86.31 0.42 1.09 16 17 C 0.09 2.17 3.20 44.92 0.14 2.32 16 18 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 19 C -0.13 -2.36 9.45 71.98 0.68 -1.68 16 20 N -0.67 -16.33 6.21 -469.05 -2.92 -19.25 16 21 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 2.43 6.34 -2.39 -0.02 2.41 16 25 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 2.75 8.03 -2.39 -0.02 2.73 16 27 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 28 H -0.01 -0.41 6.49 -2.39 -0.02 -0.42 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.08 2.26 8.07 -2.39 -0.02 2.24 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.34 7.50 8.70 -89.69 -0.78 6.72 16 Total: -1.00 -64.84 285.68 -0.84 -65.68 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.24 Total: 11.05 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 3.74 Total: -21.61 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -6.85 Total: -101.88 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.84 -0.84 -65.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.416 kcal (2) G-P(sol) polarization free energy of solvation -64.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds