Wall clock time and date at job start Mon Mar 30 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.49249 * 2 1 4 4 C 1.53052 * 109.48848 * 239.95225 * 2 1 3 5 5 N 1.46953 * 109.36530 * 298.43659 * 4 2 1 6 6 C 1.46906 * 110.99875 * 176.81213 * 5 4 2 7 7 C 1.52993 * 109.47378 * 170.00255 * 6 5 4 8 8 C 1.50696 * 109.47429 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99822 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00339 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00300 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47086 * 59.99960 * 12 10 8 14 14 H 1.48503 * 109.47151 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46879 * 299.99904 * 12 10 8 16 16 C 1.46952 * 110.88225 * 300.67540 * 5 4 2 17 17 C 1.53052 * 109.36243 * 59.32426 * 16 5 4 18 18 H 1.08999 * 109.50978 * 61.57622 * 17 16 5 19 19 C 1.53000 * 109.48982 * 181.62712 * 17 16 5 20 20 N 1.46956 * 109.36525 * 301.59776 * 17 16 5 21 21 H 1.08994 * 109.47444 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47244 * 300.04593 * 1 2 3 23 23 H 1.09001 * 109.46774 * 60.04185 * 1 2 3 24 24 H 1.09004 * 109.48604 * 178.46540 * 4 2 1 25 25 H 1.08992 * 109.48595 * 58.40863 * 4 2 1 26 26 H 1.09004 * 109.47040 * 290.00043 * 6 5 4 27 27 H 1.09000 * 109.47033 * 49.99995 * 6 5 4 28 28 H 1.09004 * 109.46862 * 299.99897 * 7 6 5 29 29 H 1.09004 * 109.46998 * 59.99419 * 7 6 5 30 30 H 0.97000 * 120.00540 * 179.97438 * 11 10 8 31 31 H 1.09005 * 109.48977 * 179.28523 * 16 5 4 32 32 H 1.09001 * 109.49340 * 299.35802 * 16 5 4 33 33 H 1.09003 * 109.47278 * 179.88701 * 19 17 16 34 34 H 1.08998 * 109.47458 * 299.88997 * 19 17 16 35 35 H 1.09006 * 109.46874 * 59.89731 * 19 17 16 36 36 H 1.00900 * 110.99872 * 295.45521 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 1.5808 -2.1180 -1.2268 6 6 1.9877 -2.8258 -2.4481 7 6 1.7156 -4.3225 -2.2849 8 6 2.1324 -5.0484 -3.5379 9 1 2.5500 -4.4975 -4.3676 10 6 1.9815 -6.4162 -3.6249 11 7 1.4734 -7.0872 -2.6143 12 14 2.4989 -7.3162 -5.1779 13 1 3.9485 -7.0993 -5.4160 14 1 2.2346 -8.7689 -5.0194 15 1 1.7241 -6.7957 -6.3329 16 6 2.0710 -2.8121 -0.0279 17 6 1.5604 -2.0897 1.2211 18 1 0.4708 -2.1134 1.2354 19 6 2.1024 -2.7860 2.4710 20 7 2.0202 -0.6941 1.1990 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5146 0.8896 23 1 -0.3633 0.5132 -0.8904 24 1 3.1302 -0.6987 -1.2628 25 1 1.6544 -0.2264 -2.1393 26 1 1.4193 -2.4436 -3.2960 27 1 3.0518 -2.6669 -2.6227 28 1 2.2840 -4.7047 -1.4370 29 1 0.6514 -4.4814 -2.1102 30 1 1.3669 -8.0494 -2.6755 31 1 1.7070 -3.8395 -0.0280 32 1 3.1611 -2.8121 -0.0278 33 1 1.7402 -2.2702 3.3603 34 1 1.7612 -3.8211 2.4871 35 1 3.1921 -2.7628 2.4561 36 1 3.0261 -0.6438 1.2600 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069629132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:48 Heat of formation + Delta-G solvation = -5.698338 kcal Electronic energy + Delta-G solvation = -14793.232871 eV Core-core repulsion = 12504.672847 eV Total energy + Delta-G solvation = -2288.560024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.41882 -35.07876 -33.05985 -32.64554 -29.39009 -28.10052 -26.54820 -25.22415 -23.01384 -21.55177 -19.98684 -19.10245 -16.54078 -15.61668 -15.06998 -14.83402 -14.65774 -14.29139 -14.08511 -13.23756 -12.82358 -12.47615 -12.12590 -12.10034 -11.70629 -11.38184 -11.32093 -11.25868 -10.93236 -10.84213 -10.70761 -10.51490 -10.34423 -9.92134 -9.39742 -9.13961 -8.37393 -8.21761 -7.68001 -6.02651 -4.05241 3.31548 3.35928 3.38334 4.25833 4.39870 4.51457 5.15871 5.24262 5.31822 5.33144 5.33878 5.51517 5.62721 5.80808 5.86342 5.89560 5.96937 6.06209 6.22348 6.24658 6.31941 6.34516 6.46479 6.51486 6.58318 6.89696 7.19574 7.44154 7.54919 7.58039 7.74959 7.82517 8.01667 8.40158 9.00986 9.58542 11.08666 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046357 B = 0.007035 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.863273 B = 3979.134480 C = 4337.510539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.078 0.922 4 C 0.020 3.980 5 N -0.532 5.532 6 C 0.062 3.938 7 C 0.023 3.977 8 C -0.524 4.524 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.021 3.979 17 C 0.080 3.920 18 H 0.091 0.909 19 C -0.143 4.143 20 N -0.680 5.680 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.023 0.977 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.096 0.904 32 H 0.024 0.976 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 11.359 6.921 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 H 0.096 0.904 4 C -0.110 4.110 5 N -0.257 5.257 6 C -0.065 4.065 7 C -0.014 4.014 8 C -0.563 4.563 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.109 4.109 17 C -0.030 4.030 18 H 0.109 0.891 19 C -0.201 4.201 20 N -0.309 5.309 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.355 11.415 7.401 13.609 hybrid contribution 1.867 -1.005 -1.749 2.748 sum 1.511 10.410 5.652 11.942 Atomic orbital electron populations 1.21714 0.93853 1.03139 1.00570 1.21600 0.96792 0.96547 0.87452 0.90423 1.22831 0.96921 0.91549 0.99681 1.62214 1.59431 1.00823 1.03200 1.22340 0.96644 0.97636 0.89848 1.19206 0.97699 0.87460 0.97029 1.21146 1.41827 0.92315 1.00971 0.92858 1.24987 0.95220 0.97659 0.96376 1.69950 1.44837 1.07754 1.30702 0.86643 0.79046 0.78608 0.83616 1.20311 1.21211 1.20189 1.22933 0.96969 1.00506 0.90461 1.21715 1.01092 0.86693 0.93460 0.89119 1.21769 1.00704 1.00431 0.97205 1.60925 1.15868 1.14801 1.39340 0.91054 0.93027 0.92852 0.95844 0.90818 0.91952 0.96482 0.96293 0.95726 0.92894 0.88555 0.95777 0.92059 0.91751 0.93112 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.84 37.15 0.33 -1.45 16 2 C 0.09 1.14 3.69 -67.65 -0.25 0.89 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.02 0.31 5.00 -3.77 -0.02 0.29 16 5 N -0.53 -9.84 4.18 -234.47 -0.98 -10.82 16 6 C 0.06 1.35 5.22 -3.82 -0.02 1.33 16 7 C 0.02 0.61 4.23 -27.89 -0.12 0.49 16 8 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 9 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 12 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.02 0.37 4.20 -3.77 -0.02 0.35 16 17 C 0.08 1.17 2.82 -67.65 -0.19 0.98 16 18 H 0.09 1.41 6.34 -51.93 -0.33 1.08 16 19 C -0.14 -1.80 9.45 37.16 0.35 -1.45 16 20 N -0.68 -9.03 6.35 -99.60 -0.63 -9.67 16 21 H 0.07 1.08 5.94 -51.93 -0.31 0.77 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.02 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.02 0.52 6.26 -51.93 -0.33 0.19 16 29 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.10 1.95 5.99 -51.93 -0.31 1.64 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.33 4.16 8.80 -39.29 -0.35 3.81 16 LS Contribution 279.73 15.07 4.22 4.22 Total: -1.00 -29.37 279.73 -8.26 -37.63 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.23 Total: 0.26 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -0.34 Total: -12.25 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.88 Total: -46.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.37 -8.26 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.933 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds