Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 N 1.46904 * 109.46892 * 240.00029 * 2 1 3 13 13 C 1.46954 * 110.99975 * 296.20063 * 12 2 1 14 14 C 1.53057 * 109.36111 * 183.18825 * 13 12 2 15 15 H 1.09000 * 109.48862 * 61.57210 * 14 13 12 16 16 C 1.53000 * 109.50494 * 181.62070 * 14 13 12 17 17 N 1.46951 * 109.36481 * 301.59641 * 14 13 12 18 18 C 1.46954 * 110.88003 * 59.32477 * 17 14 13 19 19 H 1.09001 * 109.50949 * 60.65366 * 18 17 14 20 20 C 1.52996 * 109.48981 * 180.71058 * 18 17 14 21 21 C 1.46952 * 110.99865 * 60.00273 * 12 2 1 22 22 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 23 23 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 24 24 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.48745 * 303.15278 * 13 12 2 27 27 H 1.08997 * 109.49330 * 63.22365 * 13 12 2 28 28 H 1.08993 * 109.47512 * 179.90189 * 16 14 13 29 29 H 1.09009 * 109.47091 * 299.90374 * 16 14 13 30 30 H 1.08998 * 109.47466 * 59.89892 * 16 14 13 31 31 H 1.00900 * 110.99932 * 183.19034 * 17 14 13 32 32 H 1.09001 * 109.47144 * 179.89040 * 20 18 17 33 33 H 1.09002 * 109.47240 * 299.88928 * 20 18 17 34 34 H 1.08999 * 109.47075 * 59.89180 * 20 18 17 35 35 H 1.09009 * 109.49081 * 296.77550 * 21 12 2 36 36 H 1.08999 * 109.49581 * 56.84499 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0196 -0.6925 -1.1995 13 6 1.6240 -2.1078 -1.1888 14 6 2.2191 -2.8102 -2.4116 15 1 3.3069 -2.7599 -2.3663 16 6 1.7760 -4.2745 -2.4255 17 7 1.7478 -2.1438 -3.6337 18 6 2.1434 -0.7285 -3.6443 19 1 3.2304 -0.6542 -3.6132 20 6 1.6224 -0.0625 -4.9193 21 6 1.5484 -0.0261 -2.4215 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7082 1.1608 3.4845 26 1 1.9952 -2.5823 -0.2804 27 1 0.5370 -2.1819 -1.2202 28 1 2.1986 -4.7738 -3.2974 29 1 2.1256 -4.7686 -1.5189 30 1 0.6881 -4.3246 -2.4699 31 1 2.0841 -2.6194 -4.4575 32 1 1.9143 0.9877 -4.9260 33 1 2.0463 -0.5629 -5.7900 34 1 0.5355 -0.1377 -4.9505 35 1 0.4604 -0.0764 -2.4669 36 1 1.8644 1.0171 -2.4119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069629540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = 0.719486 kcal Electronic energy + Delta-G solvation = -15144.108068 eV Core-core repulsion = 12855.826342 eV Total energy + Delta-G solvation = -2288.281726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.85302 -35.22753 -33.08846 -32.29617 -28.61803 -27.91935 -26.23184 -25.01268 -23.72141 -20.79868 -20.05111 -18.66154 -16.15479 -15.92391 -15.04708 -14.75941 -14.37220 -13.66106 -13.43612 -13.05403 -12.50977 -12.34377 -12.29318 -11.74520 -11.53908 -11.30290 -11.25862 -11.03041 -10.74345 -10.53008 -10.50029 -10.39659 -10.10124 -9.88653 -9.52548 -8.80505 -8.36755 -8.10117 -7.06481 -5.99158 -4.03110 3.31936 3.38164 3.41259 4.42516 4.43937 4.97797 5.27320 5.31627 5.35722 5.55393 5.66573 5.74505 5.84133 5.97296 6.07397 6.08717 6.13799 6.27254 6.34182 6.43235 6.58760 6.72578 6.77564 6.90895 6.94078 7.18863 7.37762 7.60139 7.70284 7.77949 7.86568 8.15546 8.43904 8.64971 9.02773 9.61861 11.07936 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.009313 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.720716 B = 3005.940823 C = 3486.257436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.536 5.536 13 C 0.071 3.929 14 C 0.082 3.918 15 H 0.039 0.961 16 C -0.141 4.141 17 N -0.682 5.682 18 C 0.085 3.915 19 H 0.040 0.960 20 C -0.141 4.141 21 C 0.060 3.940 22 H 0.086 0.914 23 H 0.009 0.991 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.085 0.915 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.330 0.670 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 -4.834 -10.687 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.260 5.260 13 C -0.057 4.057 14 C -0.028 4.028 15 H 0.057 0.943 16 C -0.199 4.199 17 N -0.315 5.315 18 C -0.025 4.025 19 H 0.058 0.942 20 C -0.200 4.200 21 C -0.069 4.069 22 H 0.105 0.895 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.912 -4.554 -10.260 11.262 hybrid contribution 0.331 -0.470 0.686 0.895 sum 1.244 -5.025 -9.574 10.884 Atomic orbital electron populations 1.22370 1.00810 0.99272 1.00460 1.19273 0.89815 0.94531 0.85899 0.94357 1.21142 1.30470 1.12597 0.89803 0.91986 1.24934 0.95228 0.95119 0.98985 1.69892 1.36975 1.23067 1.23343 0.86535 0.78505 0.79992 0.82584 1.20720 1.21350 1.19957 1.62474 1.59345 1.01744 1.02407 1.22036 0.97686 0.89942 0.96073 1.21633 0.97147 0.93263 0.90771 0.94288 1.21754 1.02009 0.95036 1.01105 1.60618 1.64277 1.02431 1.04132 1.21530 0.97374 0.88279 0.95287 0.94233 1.21768 1.01873 1.00018 0.96297 1.22091 0.97675 0.97290 0.89843 0.89490 0.97188 0.95299 0.93030 0.89693 0.94944 0.93369 0.92105 0.92106 0.85319 0.92267 0.93207 0.92077 0.94588 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.27 37.15 0.31 -3.93 16 2 C 0.21 5.43 2.42 -68.87 -0.17 5.26 16 3 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.50 -13.83 7.88 -34.44 -0.27 -14.10 16 5 H 0.06 1.71 6.43 -52.48 -0.34 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.54 -11.94 4.73 -227.88 -1.08 -13.02 16 13 C 0.07 1.46 4.22 -3.77 -0.02 1.45 16 14 C 0.08 1.36 3.19 -67.65 -0.22 1.14 16 15 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 16 C -0.14 -1.94 9.47 37.16 0.35 -1.58 16 17 N -0.68 -10.48 6.19 -99.61 -0.62 -11.10 16 18 C 0.09 1.35 3.19 -67.66 -0.22 1.14 16 19 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 20 C -0.14 -1.80 9.46 37.16 0.35 -1.44 16 21 C 0.06 1.16 4.41 -3.77 -0.02 1.14 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 23 H 0.01 0.21 6.48 -51.93 -0.34 -0.12 16 24 H 0.03 0.70 6.56 -51.93 -0.34 0.36 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.08 1.88 6.14 -51.93 -0.32 1.56 16 27 H 0.03 0.71 6.57 -51.93 -0.34 0.37 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.33 4.27 8.75 -39.29 -0.34 3.92 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.73 6.48 -51.92 -0.34 0.40 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 274.13 15.07 4.13 4.13 Total: -1.00 -28.44 274.13 -7.98 -36.42 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.03 Total: 1.58 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 0.01 Total: -9.41 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -1.07 Total: -49.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.44 -7.98 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.140 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds