Wall clock time and date at job start Mon Mar 30 2020 02:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 N 1.46904 * 109.46892 * 240.00029 * 2 1 3 13 13 C 1.46954 * 110.99975 * 296.20063 * 12 2 1 14 14 C 1.53057 * 109.36111 * 183.18825 * 13 12 2 15 15 H 1.09000 * 109.48862 * 61.57210 * 14 13 12 16 16 C 1.53000 * 109.50494 * 181.62070 * 14 13 12 17 17 N 1.46951 * 109.36481 * 301.59641 * 14 13 12 18 18 C 1.46954 * 110.88003 * 59.32477 * 17 14 13 19 19 H 1.09001 * 109.50949 * 60.65366 * 18 17 14 20 20 C 1.52996 * 109.48981 * 180.71058 * 18 17 14 21 21 C 1.46952 * 110.99865 * 60.00273 * 12 2 1 22 22 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 23 23 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 24 24 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.48745 * 303.15278 * 13 12 2 27 27 H 1.08997 * 109.49330 * 63.22365 * 13 12 2 28 28 H 1.08993 * 109.47512 * 179.90189 * 16 14 13 29 29 H 1.09009 * 109.47091 * 299.90374 * 16 14 13 30 30 H 1.08998 * 109.47466 * 59.89892 * 16 14 13 31 31 H 1.00900 * 110.99932 * 183.19034 * 17 14 13 32 32 H 1.09001 * 109.47144 * 179.89040 * 20 18 17 33 33 H 1.09002 * 109.47240 * 299.88928 * 20 18 17 34 34 H 1.08999 * 109.47075 * 59.89180 * 20 18 17 35 35 H 1.09009 * 109.49081 * 296.77550 * 21 12 2 36 36 H 1.08999 * 109.49581 * 56.84499 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0196 -0.6925 -1.1995 13 6 1.6240 -2.1078 -1.1888 14 6 2.2191 -2.8102 -2.4116 15 1 3.3069 -2.7599 -2.3663 16 6 1.7760 -4.2745 -2.4255 17 7 1.7478 -2.1438 -3.6337 18 6 2.1434 -0.7285 -3.6443 19 1 3.2304 -0.6542 -3.6132 20 6 1.6224 -0.0625 -4.9193 21 6 1.5484 -0.0261 -2.4215 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7082 1.1608 3.4845 26 1 1.9952 -2.5823 -0.2804 27 1 0.5370 -2.1819 -1.2202 28 1 2.1986 -4.7738 -3.2974 29 1 2.1256 -4.7686 -1.5189 30 1 0.6881 -4.3246 -2.4699 31 1 2.0841 -2.6194 -4.4575 32 1 1.9143 0.9877 -4.9260 33 1 2.0463 -0.5629 -5.7900 34 1 0.5355 -0.1377 -4.9505 35 1 0.4604 -0.0764 -2.4669 36 1 1.8644 1.0171 -2.4119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:52 Heat of formation + Delta-G solvation = -19.691439 kcal Electronic energy + Delta-G solvation = -15144.993152 eV Core-core repulsion = 12855.826342 eV Total energy + Delta-G solvation = -2289.166810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39946 -36.94410 -34.41773 -34.24713 -30.53365 -29.08596 -27.88173 -26.92435 -25.40887 -22.10342 -21.81586 -20.28165 -18.22617 -17.39179 -16.66698 -16.33426 -16.03946 -15.41750 -14.92858 -14.51081 -14.38558 -13.82748 -13.54531 -13.29129 -12.99724 -12.87979 -12.79092 -12.60083 -12.47761 -12.35889 -12.22748 -12.00615 -11.79813 -11.58452 -11.21042 -10.85660 -10.51034 -9.38461 -8.86909 -8.12530 -6.23999 1.41666 1.41923 1.52481 2.41543 3.16221 3.21468 3.34219 3.99364 4.05025 4.27056 4.37791 4.40486 4.54414 4.68160 4.70200 4.80013 4.84242 4.87008 4.89563 5.00992 5.09184 5.10282 5.15679 5.26779 5.33314 5.42978 5.53177 5.68661 5.76484 6.07342 6.18396 6.43120 6.62936 6.74886 6.89794 7.45245 8.94027 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.009313 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.720716 B = 3005.940823 C = 3486.257436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.214 3.786 3 H 0.004 0.996 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.546 5.546 13 C 0.076 3.924 14 C 0.088 3.912 15 H 0.034 0.966 16 C -0.133 4.133 17 N -0.681 5.681 18 C 0.090 3.910 19 H 0.036 0.964 20 C -0.133 4.133 21 C 0.059 3.941 22 H 0.062 0.938 23 H 0.023 0.977 24 H 0.025 0.975 25 H 0.262 0.738 26 H 0.063 0.937 27 H 0.017 0.983 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.351 0.649 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -6.161 -11.970 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.107 3.893 3 H 0.022 0.978 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.269 5.269 13 C -0.053 4.053 14 C -0.022 4.022 15 H 0.052 0.948 16 C -0.191 4.191 17 N -0.315 5.315 18 C -0.020 4.020 19 H 0.054 0.946 20 C -0.191 4.191 21 C -0.070 4.070 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.170 0.830 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.450 -5.896 -11.576 13.072 hybrid contribution 0.162 -0.020 1.051 1.064 sum 1.612 -5.916 -10.525 12.181 Atomic orbital electron populations 1.22146 1.00436 0.98759 0.99855 1.19043 0.89961 0.92963 0.87339 0.97783 1.21384 1.30628 1.12644 0.90895 0.92407 1.25735 0.95348 0.95804 1.01943 1.70021 1.37775 1.24220 1.24052 0.85514 0.77982 0.79105 0.78785 1.20219 1.20863 1.19168 1.62400 1.59527 1.02680 1.02296 1.21998 0.96775 0.89039 0.97488 1.21518 0.96491 0.94596 0.89566 0.94775 1.21697 1.01863 0.92971 1.02598 1.60550 1.64302 1.02231 1.04451 1.21483 0.96941 0.88601 0.94961 0.94597 1.21703 1.01616 1.00483 0.95255 1.22187 0.97134 0.97553 0.90138 0.91955 0.95767 0.95580 0.92931 0.91822 0.96527 0.90509 0.91928 0.92470 0.82974 0.91467 0.90657 0.92425 0.95736 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.83 8.27 71.98 0.60 -7.23 16 2 C 0.21 11.37 2.42 44.16 0.11 11.48 16 3 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 4 C -0.52 -29.14 7.88 25.60 0.20 -28.94 16 5 H 0.06 3.24 6.43 -2.91 -0.02 3.22 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.55 -24.66 4.73 -874.87 -4.14 -28.80 16 13 C 0.08 3.11 4.22 86.31 0.36 3.48 16 14 C 0.09 2.79 3.19 44.92 0.14 2.94 16 15 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 16 C -0.13 -3.33 9.47 71.98 0.68 -2.65 16 17 N -0.68 -19.23 6.19 -469.05 -2.90 -22.13 16 18 C 0.09 2.69 3.19 44.92 0.14 2.84 16 19 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 20 C -0.13 -2.98 9.46 71.98 0.68 -2.30 16 21 C 0.06 2.25 4.41 86.31 0.38 2.63 16 22 H 0.06 3.50 6.07 -2.39 -0.01 3.49 16 23 H 0.02 1.12 6.48 -2.38 -0.02 1.10 16 24 H 0.03 1.30 6.56 -2.39 -0.02 1.28 16 25 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.06 2.86 6.14 -2.39 -0.01 2.84 16 27 H 0.02 0.73 6.57 -2.39 -0.02 0.71 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.35 7.75 8.75 -89.69 -0.79 6.96 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.02 0.99 6.48 -2.38 -0.02 0.98 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -61.69 274.13 -0.76 -62.45 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.26 Total: 12.65 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 3.75 Total: -16.74 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.80 Total: -104.65 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.69 -0.76 -62.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.758 kcal (2) G-P(sol) polarization free energy of solvation -61.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds