Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46950 * 2 1 4 4 C 1.50702 * 109.47274 * 120.00093 * 2 1 3 5 5 H 1.07996 * 120.00112 * 119.99669 * 4 2 1 6 6 C 1.37881 * 119.99999 * 300.00026 * 4 2 1 7 7 N 1.31506 * 119.99912 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99690 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47293 * 89.99993 * 8 6 4 10 10 H 1.48499 * 109.47149 * 209.99927 * 8 6 4 11 11 H 1.48497 * 109.47414 * 330.00167 * 8 6 4 12 12 N 1.46898 * 109.47166 * 239.99735 * 2 1 3 13 13 C 1.46963 * 110.99684 * 60.00305 * 12 2 1 14 14 C 1.53056 * 109.36215 * 183.18755 * 13 12 2 15 15 H 1.09004 * 109.48435 * 181.62786 * 14 13 12 16 16 C 1.53002 * 109.48791 * 61.56476 * 14 13 12 17 17 N 1.46953 * 109.36571 * 301.59782 * 14 13 12 18 18 C 1.46954 * 110.88290 * 59.31944 * 17 14 13 19 19 H 1.09002 * 109.48555 * 60.64731 * 18 17 14 20 20 C 1.52998 * 109.48970 * 180.71775 * 18 17 14 21 21 C 1.46956 * 111.00097 * 183.79510 * 12 2 1 22 22 H 1.09002 * 109.47030 * 299.99477 * 1 2 3 23 23 H 1.08999 * 109.47104 * 60.00026 * 1 2 3 24 24 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99792 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.49116 * 63.21762 * 13 12 2 27 27 H 1.08998 * 109.48714 * 303.14985 * 13 12 2 28 28 H 1.08996 * 109.47189 * 59.99969 * 16 14 13 29 29 H 1.09002 * 109.46787 * 179.97438 * 16 14 13 30 30 H 1.08994 * 109.47102 * 299.99382 * 16 14 13 31 31 H 1.00898 * 111.00079 * 183.19613 * 17 14 13 32 32 H 1.08993 * 109.47380 * 59.99959 * 20 18 17 33 33 H 1.09004 * 109.46932 * 180.02562 * 20 18 17 34 34 H 1.09000 * 109.46542 * 299.99855 * 20 18 17 35 35 H 1.09004 * 109.48845 * 56.85121 * 21 12 2 36 36 H 1.08997 * 109.49356 * 296.78546 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.5485 -0.0261 -2.4215 14 6 2.0124 -0.8213 -3.6442 15 1 1.6887 -0.3132 -4.5527 16 6 1.4058 -2.2253 -3.6003 17 7 3.4786 -0.9202 -3.6336 18 6 3.9498 -1.5865 -2.4115 19 1 3.5397 -2.5954 -2.3662 20 6 5.4781 -1.6563 -2.4251 21 6 3.4859 -0.7913 -1.1888 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9026 -0.5284 4.4375 26 1 1.9586 0.9827 -2.4668 27 1 0.4597 0.0237 -2.4119 28 1 0.3184 -2.1515 -3.6062 29 1 1.7360 -2.7911 -4.4714 30 1 1.7307 -2.7331 -2.6922 31 1 3.8149 -1.3957 -4.4575 32 1 5.8876 -0.6472 -2.4694 33 1 5.8273 -2.1510 -1.5187 34 1 5.8082 -2.2210 -3.2970 35 1 3.8096 -1.2994 -0.2804 36 1 3.9180 0.2089 -1.2201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069629543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = 11.938481 kcal Electronic energy + Delta-G solvation = -15287.805886 eV Core-core repulsion = 13000.010652 eV Total energy + Delta-G solvation = -2287.795234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10782 -35.37188 -32.81011 -32.24869 -29.82186 -27.74428 -26.67979 -24.70582 -23.82983 -21.46238 -19.67160 -18.37598 -16.81685 -16.10208 -15.07988 -14.89945 -14.14303 -13.83361 -13.79185 -13.22923 -12.78386 -12.46267 -12.22291 -11.96758 -11.89250 -11.65585 -11.32556 -11.09201 -10.77746 -10.65548 -10.54524 -10.24240 -10.10402 -9.83814 -9.44419 -8.96895 -8.55500 -8.14412 -7.28285 -6.06478 -4.04826 3.27089 3.37525 3.39434 4.40288 4.45278 4.76907 5.21822 5.25865 5.36826 5.46033 5.54231 5.73841 5.80200 5.98166 6.00274 6.04936 6.09344 6.22874 6.32008 6.38332 6.41768 6.43454 6.56426 6.66953 6.73833 6.79306 6.91934 7.28059 7.38500 7.61955 7.63767 7.99785 8.13071 8.67094 8.99250 9.55894 11.06191 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038606 B = 0.010227 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.100309 B = 2737.175446 C = 3155.405466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.182 3.818 3 H -0.003 1.003 4 C -0.505 4.505 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.522 5.522 13 C 0.055 3.945 14 C 0.087 3.913 15 H 0.074 0.926 16 C -0.176 4.176 17 N -0.682 5.682 18 C 0.079 3.921 19 H 0.047 0.953 20 C -0.142 4.142 21 C 0.073 3.927 22 H 0.040 0.960 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.331 0.669 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 -0.148 -13.004 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 H 0.014 0.986 4 C -0.543 4.543 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.246 5.246 13 C -0.074 4.074 14 C -0.023 4.023 15 H 0.093 0.907 16 C -0.235 4.235 17 N -0.313 5.313 18 C -0.030 4.030 19 H 0.065 0.935 20 C -0.200 4.200 21 C -0.056 4.056 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.149 0.851 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.748 0.019 -12.525 12.547 hybrid contribution -0.643 0.716 0.037 0.963 sum 0.105 0.735 -12.488 12.510 Atomic orbital electron populations 1.22186 0.98603 1.01225 0.98167 1.19664 0.91384 0.92629 0.88878 0.98571 1.20977 1.31883 1.13499 0.87934 0.89978 1.24920 0.95830 0.96592 0.95827 1.69878 1.45766 1.40289 0.97858 0.86875 0.80724 0.83875 0.76799 1.20597 1.22520 1.19461 1.62071 1.09359 1.51824 1.01382 1.22177 0.99737 0.95184 0.90310 1.21589 0.87257 0.95485 0.97983 0.90745 1.22376 1.01286 0.97991 1.01801 1.60784 1.09622 1.56580 1.04330 1.21652 0.94388 0.96568 0.90436 0.93477 1.21761 0.94933 1.02041 1.01283 1.22073 0.88204 0.98416 0.96896 0.94109 0.95263 0.92132 0.92653 0.95371 0.90799 0.92618 0.94184 0.90591 0.85143 0.92164 0.91919 0.93322 0.88888 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.45 37.16 0.31 -2.90 16 2 C 0.18 4.38 1.65 -68.86 -0.11 4.27 16 3 H 0.00 -0.08 7.20 -51.93 -0.37 -0.46 16 4 C -0.50 -14.10 8.47 -34.44 -0.29 -14.39 16 5 H 0.08 2.48 6.66 -52.49 -0.35 2.13 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.89 22.17 24.37 -169.99 -4.14 18.03 16 9 H -0.28 -6.80 6.87 56.52 0.39 -6.41 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.52 -10.92 3.89 -227.87 -0.89 -11.80 16 13 C 0.05 0.98 4.75 -3.76 -0.02 0.96 16 14 C 0.09 1.28 3.70 -67.65 -0.25 1.03 16 15 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.18 -2.48 8.83 37.16 0.33 -2.15 16 17 N -0.68 -9.93 6.34 -99.60 -0.63 -10.57 16 18 C 0.08 1.26 2.81 -67.66 -0.19 1.07 16 19 H 0.05 0.78 6.34 -51.93 -0.33 0.45 16 20 C -0.14 -1.92 9.46 37.16 0.35 -1.57 16 21 C 0.07 1.45 4.61 -3.76 -0.02 1.43 16 22 H 0.04 0.94 3.27 -51.93 -0.17 0.77 16 23 H 0.03 0.56 6.34 -51.93 -0.33 0.23 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 1.27 6.14 -51.93 -0.32 0.95 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.26 5.94 -51.93 -0.31 0.95 16 31 H 0.33 4.07 8.81 -39.29 -0.35 3.72 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 2.06 6.14 -51.93 -0.32 1.74 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 265.67 15.07 4.00 4.00 Total: -1.00 -29.43 265.67 -6.70 -36.12 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.83 Total: 1.16 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 0.02 Total: -10.33 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.74 Total: -48.98 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.43 -6.70 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.063 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds