Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46950 * 2 1 4 4 C 1.50702 * 109.47274 * 120.00093 * 2 1 3 5 5 H 1.07996 * 120.00112 * 119.99669 * 4 2 1 6 6 C 1.37881 * 119.99999 * 300.00026 * 4 2 1 7 7 N 1.31506 * 119.99912 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99690 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47293 * 89.99993 * 8 6 4 10 10 H 1.48499 * 109.47149 * 209.99927 * 8 6 4 11 11 H 1.48497 * 109.47414 * 330.00167 * 8 6 4 12 12 N 1.46898 * 109.47166 * 239.99735 * 2 1 3 13 13 C 1.46963 * 110.99684 * 60.00305 * 12 2 1 14 14 C 1.53056 * 109.36215 * 183.18755 * 13 12 2 15 15 H 1.09004 * 109.48435 * 181.62786 * 14 13 12 16 16 C 1.53002 * 109.48791 * 61.56476 * 14 13 12 17 17 N 1.46953 * 109.36571 * 301.59782 * 14 13 12 18 18 C 1.46954 * 110.88290 * 59.31944 * 17 14 13 19 19 H 1.09002 * 109.48555 * 60.64731 * 18 17 14 20 20 C 1.52998 * 109.48970 * 180.71775 * 18 17 14 21 21 C 1.46956 * 111.00097 * 183.79510 * 12 2 1 22 22 H 1.09002 * 109.47030 * 299.99477 * 1 2 3 23 23 H 1.08999 * 109.47104 * 60.00026 * 1 2 3 24 24 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99792 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.49116 * 63.21762 * 13 12 2 27 27 H 1.08998 * 109.48714 * 303.14985 * 13 12 2 28 28 H 1.08996 * 109.47189 * 59.99969 * 16 14 13 29 29 H 1.09002 * 109.46787 * 179.97438 * 16 14 13 30 30 H 1.08994 * 109.47102 * 299.99382 * 16 14 13 31 31 H 1.00898 * 111.00079 * 183.19613 * 17 14 13 32 32 H 1.08993 * 109.47380 * 59.99959 * 20 18 17 33 33 H 1.09004 * 109.46932 * 180.02562 * 20 18 17 34 34 H 1.09000 * 109.46542 * 299.99855 * 20 18 17 35 35 H 1.09004 * 109.48845 * 56.85121 * 21 12 2 36 36 H 1.08997 * 109.49356 * 296.78546 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.5485 -0.0261 -2.4215 14 6 2.0124 -0.8213 -3.6442 15 1 1.6887 -0.3132 -4.5527 16 6 1.4058 -2.2253 -3.6003 17 7 3.4786 -0.9202 -3.6336 18 6 3.9498 -1.5865 -2.4115 19 1 3.5397 -2.5954 -2.3662 20 6 5.4781 -1.6563 -2.4251 21 6 3.4859 -0.7913 -1.1888 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9026 -0.5284 4.4375 26 1 1.9586 0.9827 -2.4668 27 1 0.4597 0.0237 -2.4119 28 1 0.3184 -2.1515 -3.6062 29 1 1.7360 -2.7911 -4.4714 30 1 1.7307 -2.7331 -2.6922 31 1 3.8149 -1.3957 -4.4575 32 1 5.8876 -0.6472 -2.4694 33 1 5.8273 -2.1510 -1.5187 34 1 5.8082 -2.2210 -3.2970 35 1 3.8096 -1.2994 -0.2804 36 1 3.9180 0.2089 -1.2201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -10.649913 kcal Electronic energy + Delta-G solvation = -15288.785393 eV Core-core repulsion = 13000.010652 eV Total energy + Delta-G solvation = -2288.774741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54502 -37.03453 -34.42124 -33.97314 -31.62933 -28.91613 -28.23531 -26.54157 -25.40348 -22.86091 -21.46491 -19.75894 -18.88785 -17.61065 -16.81450 -16.22969 -15.75478 -15.46964 -15.21199 -14.98386 -14.46751 -14.13526 -13.59285 -13.49143 -13.23777 -13.09910 -12.76956 -12.63547 -12.46979 -12.34804 -12.04566 -11.91229 -11.65443 -11.51104 -11.19855 -10.93379 -10.73130 -9.36209 -8.96867 -8.29716 -6.32566 1.27622 1.33221 1.42990 2.29962 3.03045 3.19221 3.27398 3.96468 4.09151 4.20520 4.28327 4.40976 4.51467 4.54398 4.63361 4.67059 4.71502 4.76184 4.85244 4.94317 5.00778 5.03742 5.08505 5.12765 5.24828 5.35572 5.44117 5.54249 5.63583 6.00561 6.09717 6.37525 6.60449 6.72366 6.74239 7.32182 8.86431 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038606 B = 0.010227 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.100309 B = 2737.175446 C = 3155.405466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.183 3.817 3 H -0.019 1.019 4 C -0.506 4.506 5 H 0.042 0.958 6 C 0.013 3.987 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.263 1.263 10 H -0.298 1.298 11 H -0.257 1.257 12 N -0.528 5.528 13 C 0.051 3.949 14 C 0.090 3.910 15 H 0.105 0.895 16 C -0.169 4.169 17 N -0.681 5.681 18 C 0.089 3.911 19 H 0.042 0.958 20 C -0.136 4.136 21 C 0.075 3.925 22 H 0.034 0.966 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.266 0.734 26 H 0.019 0.981 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.352 0.648 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 0.624 -15.605 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.075 3.925 3 H -0.001 1.001 4 C -0.544 4.544 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.189 1.189 10 H -0.225 1.225 11 H -0.181 1.181 12 N -0.253 5.253 13 C -0.077 4.077 14 C -0.020 4.020 15 H 0.123 0.877 16 C -0.228 4.228 17 N -0.314 5.314 18 C -0.021 4.021 19 H 0.060 0.940 20 C -0.194 4.194 21 C -0.053 4.053 22 H 0.052 0.948 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.171 0.829 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.253 0.782 -15.170 15.192 hybrid contribution -0.260 0.413 0.808 0.944 sum -0.513 1.195 -14.362 14.421 Atomic orbital electron populations 1.22071 0.96610 1.01448 0.99490 1.19514 0.92881 0.91287 0.88789 1.00112 1.21200 1.30906 1.12320 0.89974 0.93934 1.25748 0.97404 0.99846 0.95404 1.70025 1.47726 1.42419 0.98500 0.85863 0.79480 0.80086 0.76997 1.18890 1.22530 1.18098 1.62043 1.09739 1.51840 1.01646 1.22337 1.00348 0.95056 0.89966 1.21631 0.87279 0.95641 0.97435 0.87688 1.22290 1.01614 0.97472 1.01386 1.60703 1.09744 1.56656 1.04324 1.21464 0.95879 0.95310 0.89408 0.94030 1.21716 0.92989 1.02332 1.02396 1.21992 0.87916 0.97712 0.97702 0.94787 0.91804 0.92502 0.92528 0.96252 0.89731 0.92032 0.91731 0.93597 0.82882 0.92440 0.92519 0.90398 0.92544 0.97017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.93 8.45 71.98 0.61 -5.33 16 2 C 0.18 8.86 1.65 44.17 0.07 8.93 16 3 H -0.02 -0.94 7.20 -2.39 -0.02 -0.96 16 4 C -0.51 -29.29 8.47 25.60 0.22 -29.07 16 5 H 0.04 2.74 6.66 -2.91 -0.02 2.72 16 6 C 0.01 0.78 5.45 84.66 0.46 1.24 16 7 N -0.95 -59.59 13.96 21.45 0.30 -59.30 16 8 Si 0.95 45.78 24.37 68.60 1.67 47.45 16 9 H -0.26 -11.97 6.87 99.48 0.68 -11.29 16 10 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 11 H -0.26 -11.76 6.53 99.48 0.65 -11.11 16 12 N -0.53 -22.08 3.89 -874.84 -3.40 -25.48 16 13 C 0.05 1.72 4.75 86.31 0.41 2.13 16 14 C 0.09 2.36 3.70 44.92 0.17 2.53 16 15 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 16 C -0.17 -4.27 8.83 71.98 0.64 -3.63 16 17 N -0.68 -17.92 6.34 -469.03 -2.97 -20.90 16 18 C 0.09 2.77 2.81 44.92 0.13 2.90 16 19 H 0.04 1.36 6.34 -2.39 -0.02 1.34 16 20 C -0.14 -3.51 9.46 71.98 0.68 -2.83 16 21 C 0.08 3.09 4.61 86.31 0.40 3.49 16 22 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 23 H 0.06 2.26 6.34 -2.39 -0.02 2.25 16 24 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 26 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 2.63 6.14 -2.39 -0.01 2.62 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.45 5.94 -2.39 -0.01 1.43 16 31 H 0.35 7.21 8.81 -89.70 -0.79 6.42 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 2.69 6.14 -2.38 -0.01 2.67 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -65.43 265.67 -0.44 -65.87 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.19 Total: 11.98 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.78 Total: -19.63 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -6.08 Total: -105.67 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -65.43 -0.44 -65.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.220 kcal (2) G-P(sol) polarization free energy of solvation -65.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds