Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47685 * 2 1 4 4 C 1.50706 * 109.47178 * 120.00056 * 2 1 3 5 5 H 1.08004 * 119.99712 * 114.58602 * 4 2 1 6 6 C 1.37874 * 120.00001 * 294.58891 * 4 2 1 7 7 N 1.31508 * 120.00139 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47080 * 60.00254 * 8 6 4 10 10 H 1.48496 * 109.47115 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47261 * 300.00169 * 8 6 4 12 12 N 1.46906 * 109.47307 * 239.99975 * 2 1 3 13 13 C 1.46956 * 111.00026 * 171.51478 * 12 2 1 14 14 C 1.53051 * 109.36032 * 183.18969 * 13 12 2 15 15 H 1.09002 * 109.48868 * 61.59067 * 14 13 12 16 16 C 1.53003 * 109.48669 * 181.62880 * 14 13 12 17 17 N 1.46954 * 109.38635 * 301.60712 * 14 13 12 18 18 C 1.46960 * 110.87549 * 59.28510 * 17 14 13 19 19 H 1.09006 * 109.48744 * 180.73316 * 18 17 14 20 20 C 1.52999 * 109.48799 * 60.69702 * 18 17 14 21 21 C 1.46954 * 110.99906 * 295.31758 * 12 2 1 22 22 H 1.09001 * 109.47251 * 299.99879 * 1 2 3 23 23 H 1.08996 * 109.47053 * 60.00133 * 1 2 3 24 24 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 25 25 H 0.96999 * 120.00504 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.49088 * 63.22352 * 13 12 2 27 27 H 1.09001 * 109.48560 * 303.15373 * 13 12 2 28 28 H 1.09000 * 109.46711 * 59.95763 * 16 14 13 29 29 H 1.09000 * 109.47388 * 299.95776 * 16 14 13 30 30 H 1.09005 * 109.47088 * 179.97438 * 16 14 13 31 31 H 1.00899 * 111.00470 * 183.17818 * 17 14 13 32 32 H 1.08999 * 109.47176 * 300.08339 * 20 18 17 33 33 H 1.09009 * 109.47345 * 60.08086 * 20 18 17 34 34 H 1.09000 * 109.47717 * 180.08311 * 20 18 17 35 35 H 1.09006 * 109.48834 * 296.77605 * 21 12 2 36 36 H 1.09002 * 109.49393 * 56.83720 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5792 -1.6367 1.1337 6 6 1.7937 -0.1780 2.4797 7 7 1.1281 0.9502 2.5974 8 14 2.4158 -1.0590 4.0049 9 1 3.8949 -1.1749 3.9409 10 1 2.0322 -0.2865 5.2138 11 1 1.8154 -2.4155 4.0725 12 7 2.0197 -0.6925 -1.1995 13 6 3.4746 -0.5393 -1.3389 14 6 3.9326 -1.2052 -2.6386 15 1 3.4554 -0.7141 -3.4867 16 6 5.4523 -1.0828 -2.7668 17 7 3.5551 -2.6253 -2.6185 18 6 2.1002 -2.7785 -2.4783 19 1 1.8469 -3.8384 -2.4528 20 6 1.4004 -2.1150 -3.6661 21 6 1.6421 -2.1126 -1.1787 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.9605 1.3250 3.4762 26 1 3.9728 -1.0123 -0.4928 27 1 3.7277 0.5206 -1.3645 28 1 5.9291 -1.5740 -1.9186 29 1 5.7321 -0.0295 -2.7810 30 1 5.7783 -1.5576 -3.6923 31 1 3.8913 -3.1007 -3.4425 32 1 1.6544 -1.0553 -3.6918 33 1 1.7268 -2.5895 -4.5916 34 1 0.3213 -2.2274 -3.5612 35 1 2.1196 -2.6035 -0.3306 36 1 0.5594 -2.1998 -1.0874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069629545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = 1.056667 kcal Electronic energy + Delta-G solvation = -15320.992460 eV Core-core repulsion = 13032.725354 eV Total energy + Delta-G solvation = -2288.267105 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.95657 -35.18570 -32.65233 -32.17243 -28.93838 -27.64365 -26.12632 -25.05973 -23.57142 -21.52908 -19.55838 -18.33212 -16.32573 -15.80020 -14.90112 -14.65980 -14.32765 -13.77880 -13.27607 -13.16356 -12.43013 -12.27186 -11.94983 -11.88029 -11.53348 -11.22040 -11.03999 -10.94010 -10.66602 -10.56400 -10.51331 -10.30924 -9.98618 -9.70493 -9.45396 -9.12629 -8.36287 -8.02741 -7.05048 -5.96050 -4.07148 3.31547 3.36065 3.39571 4.43928 4.55138 5.06862 5.30658 5.36657 5.48210 5.52352 5.69560 5.80283 5.88799 6.05165 6.12658 6.18887 6.23994 6.34076 6.46894 6.65462 6.76048 6.82380 6.94902 6.97751 7.06957 7.22091 7.47394 7.59819 7.73562 7.75675 7.99760 8.20087 8.36345 8.49371 9.03449 9.60220 11.05726 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034457 B = 0.010148 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.403437 B = 2758.565805 C = 3038.636849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.206 3.794 3 H 0.040 0.960 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.536 5.536 13 C 0.071 3.929 14 C 0.081 3.919 15 H 0.042 0.958 16 C -0.142 4.142 17 N -0.679 5.679 18 C 0.082 3.918 19 H 0.072 0.928 20 C -0.173 4.173 21 C 0.068 3.932 22 H 0.073 0.927 23 H 0.015 0.985 24 H 0.027 0.973 25 H 0.261 0.739 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.329 0.671 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -4.558 -9.759 11.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.058 0.942 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.260 5.260 13 C -0.058 4.058 14 C -0.029 4.029 15 H 0.060 0.940 16 C -0.201 4.201 17 N -0.310 5.310 18 C -0.028 4.028 19 H 0.091 0.909 20 C -0.232 4.232 21 C -0.061 4.061 22 H 0.092 0.908 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.043 -4.260 -9.335 10.703 hybrid contribution 0.371 -0.589 0.786 1.050 sum 3.414 -4.849 -8.549 10.404 Atomic orbital electron populations 1.21723 0.98032 0.98862 0.99670 1.19252 0.92034 0.94249 0.84483 0.94204 1.21704 1.35684 1.08731 0.91828 0.92411 1.24913 0.94936 0.94781 0.98844 1.69903 1.40261 1.18882 1.23693 0.86743 0.79331 0.79796 0.82645 1.20369 1.21327 1.20341 1.62630 1.10789 1.10987 1.41639 1.21912 0.90066 0.98844 0.94946 1.21612 0.94515 0.88406 0.98345 0.94049 1.21774 0.95447 1.01418 1.01415 1.60728 1.12863 1.12897 1.44512 1.21711 0.86650 0.98632 0.95776 0.90938 1.22368 1.01011 1.02671 0.97165 1.21966 0.99828 0.89866 0.94454 0.90799 0.96615 0.95436 0.92926 0.93718 0.91876 0.92008 0.92340 0.93407 0.85426 0.91049 0.94491 0.92671 0.93560 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 8.92 37.15 0.33 -2.70 16 2 C 0.21 5.19 2.23 -68.86 -0.15 5.04 16 3 H 0.04 1.11 8.05 -51.93 -0.42 0.70 16 4 C -0.54 -14.69 7.11 -34.44 -0.24 -14.94 16 5 H 0.06 1.60 5.81 -52.48 -0.30 1.30 16 6 C 0.07 1.87 5.32 -17.82 -0.09 1.78 16 7 N -0.89 -25.43 11.73 55.43 0.65 -24.78 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.54 -11.53 3.99 -227.88 -0.91 -12.44 16 13 C 0.07 1.43 4.65 -3.77 -0.02 1.41 16 14 C 0.08 1.30 2.81 -67.66 -0.19 1.11 16 15 H 0.04 0.67 6.35 -51.93 -0.33 0.34 16 16 C -0.14 -1.92 9.46 37.16 0.35 -1.57 16 17 N -0.68 -10.61 6.34 -99.60 -0.63 -11.24 16 18 C 0.08 1.33 3.69 -67.66 -0.25 1.08 16 19 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.17 -2.56 8.83 37.16 0.33 -2.23 16 21 C 0.07 1.36 4.39 -3.77 -0.02 1.34 16 22 H 0.07 1.96 6.51 -51.93 -0.34 1.62 16 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.03 0.63 6.45 -51.93 -0.33 0.30 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.04 1.01 7.23 -51.93 -0.38 0.63 16 27 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.33 4.33 8.81 -39.29 -0.35 3.98 16 32 H 0.07 1.18 5.94 -51.93 -0.31 0.87 16 33 H 0.04 0.47 8.14 -51.92 -0.42 0.04 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 1.05 6.24 -51.93 -0.32 0.73 16 36 H 0.07 1.42 6.28 -51.93 -0.33 1.09 16 LS Contribution 271.40 15.07 4.09 4.09 Total: -1.00 -27.88 271.40 -7.70 -35.58 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.92 Total: 1.94 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 0.04 Total: -9.67 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.89 Total: -48.46 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.88 -7.70 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.638 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds