Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47685 * 2 1 4 4 C 1.50706 * 109.47178 * 120.00056 * 2 1 3 5 5 H 1.08004 * 119.99712 * 114.58602 * 4 2 1 6 6 C 1.37874 * 120.00001 * 294.58891 * 4 2 1 7 7 N 1.31508 * 120.00139 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47080 * 60.00254 * 8 6 4 10 10 H 1.48496 * 109.47115 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47261 * 300.00169 * 8 6 4 12 12 N 1.46906 * 109.47307 * 239.99975 * 2 1 3 13 13 C 1.46956 * 111.00026 * 171.51478 * 12 2 1 14 14 C 1.53051 * 109.36032 * 183.18969 * 13 12 2 15 15 H 1.09002 * 109.48868 * 61.59067 * 14 13 12 16 16 C 1.53003 * 109.48669 * 181.62880 * 14 13 12 17 17 N 1.46954 * 109.38635 * 301.60712 * 14 13 12 18 18 C 1.46960 * 110.87549 * 59.28510 * 17 14 13 19 19 H 1.09006 * 109.48744 * 180.73316 * 18 17 14 20 20 C 1.52999 * 109.48799 * 60.69702 * 18 17 14 21 21 C 1.46954 * 110.99906 * 295.31758 * 12 2 1 22 22 H 1.09001 * 109.47251 * 299.99879 * 1 2 3 23 23 H 1.08996 * 109.47053 * 60.00133 * 1 2 3 24 24 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 25 25 H 0.96999 * 120.00504 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.49088 * 63.22352 * 13 12 2 27 27 H 1.09001 * 109.48560 * 303.15373 * 13 12 2 28 28 H 1.09000 * 109.46711 * 59.95763 * 16 14 13 29 29 H 1.09000 * 109.47388 * 299.95776 * 16 14 13 30 30 H 1.09005 * 109.47088 * 179.97438 * 16 14 13 31 31 H 1.00899 * 111.00470 * 183.17818 * 17 14 13 32 32 H 1.08999 * 109.47176 * 300.08339 * 20 18 17 33 33 H 1.09009 * 109.47345 * 60.08086 * 20 18 17 34 34 H 1.09000 * 109.47717 * 180.08311 * 20 18 17 35 35 H 1.09006 * 109.48834 * 296.77605 * 21 12 2 36 36 H 1.09002 * 109.49393 * 56.83720 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5792 -1.6367 1.1337 6 6 1.7937 -0.1780 2.4797 7 7 1.1281 0.9502 2.5974 8 14 2.4158 -1.0590 4.0049 9 1 3.8949 -1.1749 3.9409 10 1 2.0322 -0.2865 5.2138 11 1 1.8154 -2.4155 4.0725 12 7 2.0197 -0.6925 -1.1995 13 6 3.4746 -0.5393 -1.3389 14 6 3.9326 -1.2052 -2.6386 15 1 3.4554 -0.7141 -3.4867 16 6 5.4523 -1.0828 -2.7668 17 7 3.5551 -2.6253 -2.6185 18 6 2.1002 -2.7785 -2.4783 19 1 1.8469 -3.8384 -2.4528 20 6 1.4004 -2.1150 -3.6661 21 6 1.6421 -2.1126 -1.1787 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.9605 1.3250 3.4762 26 1 3.9728 -1.0123 -0.4928 27 1 3.7277 0.5206 -1.3645 28 1 5.9291 -1.5740 -1.9186 29 1 5.7321 -0.0295 -2.7810 30 1 5.7783 -1.5576 -3.6923 31 1 3.8913 -3.1007 -3.4425 32 1 1.6544 -1.0553 -3.6918 33 1 1.7268 -2.5895 -4.5916 34 1 0.3213 -2.2274 -3.5612 35 1 2.1196 -2.6035 -0.3306 36 1 0.5594 -2.1998 -1.0874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = -18.521228 kcal Electronic energy + Delta-G solvation = -15321.841421 eV Core-core repulsion = 13032.725354 eV Total energy + Delta-G solvation = -2289.116066 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47452 -36.92764 -34.19466 -33.94436 -30.82887 -28.86734 -27.58943 -27.17354 -25.21063 -22.94583 -21.40388 -19.89066 -18.21485 -17.39561 -16.67214 -16.07839 -15.97885 -15.36136 -15.09762 -14.66558 -14.15894 -13.59429 -13.49072 -13.17580 -13.12141 -12.93472 -12.80290 -12.60545 -12.45885 -12.26077 -12.11264 -11.98538 -11.78009 -11.36557 -11.19092 -11.04181 -10.50797 -9.29967 -8.89923 -8.06718 -6.27179 1.36787 1.36895 1.44983 2.39096 3.14395 3.31513 3.41158 4.04696 4.16513 4.25405 4.38497 4.50175 4.60763 4.69885 4.77591 4.86715 4.92562 4.99875 5.04549 5.08940 5.16974 5.20103 5.22415 5.31657 5.37565 5.50370 5.56434 5.68091 5.92819 6.17282 6.18144 6.34562 6.64602 6.69081 6.93850 7.43458 8.91083 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034457 B = 0.010148 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.403437 B = 2758.565805 C = 3038.636849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.209 3.791 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.915 5.915 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.531 5.531 13 C 0.072 3.928 14 C 0.090 3.910 15 H 0.049 0.951 16 C -0.136 4.136 17 N -0.685 5.685 18 C 0.088 3.912 19 H 0.093 0.907 20 C -0.164 4.164 21 C 0.070 3.930 22 H 0.048 0.952 23 H 0.030 0.970 24 H 0.032 0.968 25 H 0.262 0.738 26 H 0.013 0.987 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.350 0.650 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.014 0.986 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 -5.872 -11.197 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 H 0.023 0.977 4 C -0.586 4.586 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.554 5.554 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.058 4.058 14 C -0.020 4.020 15 H 0.067 0.933 16 C -0.194 4.194 17 N -0.318 5.318 18 C -0.022 4.022 19 H 0.111 0.889 20 C -0.223 4.223 21 C -0.059 4.059 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.170 0.830 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.628 -5.590 -10.797 12.689 hybrid contribution 0.197 -0.173 1.213 1.241 sum 3.826 -5.764 -9.584 11.820 Atomic orbital electron populations 1.21532 0.97322 0.98974 0.99161 1.19063 0.92574 0.92662 0.85584 0.97692 1.21871 1.35461 1.08388 0.92923 0.93438 1.25622 0.95230 0.95501 1.01575 1.70015 1.41107 1.19956 1.24292 0.85797 0.78696 0.78839 0.79427 1.20207 1.20645 1.19864 1.62597 1.11762 1.11836 1.39216 1.21960 0.88813 0.98647 0.96336 1.21494 0.96283 0.88470 0.95726 0.93328 1.21727 0.93132 1.02173 1.02365 1.60632 1.12545 1.12658 1.46011 1.21637 0.87233 0.99356 0.93998 0.88932 1.22258 1.00986 1.01487 0.97561 1.21980 0.99305 0.88706 0.95919 0.93260 0.95051 0.94880 0.92869 0.96894 0.92722 0.93127 0.91672 0.90552 0.83023 0.92876 0.91639 0.92495 0.96733 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.51 8.92 71.98 0.64 -4.86 16 2 C 0.21 10.81 2.23 44.17 0.10 10.91 16 3 H 0.01 0.30 8.05 -2.39 -0.02 0.28 16 4 C -0.55 -30.55 7.11 25.60 0.18 -30.37 16 5 H 0.05 2.71 5.81 -2.91 -0.02 2.70 16 6 C 0.02 1.15 5.32 84.65 0.45 1.60 16 7 N -0.91 -53.38 11.73 21.45 0.25 -53.13 16 8 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.53 -23.05 3.99 -874.87 -3.49 -26.54 16 13 C 0.07 2.90 4.65 86.31 0.40 3.30 16 14 C 0.09 2.74 2.81 44.92 0.13 2.86 16 15 H 0.05 1.45 6.35 -2.39 -0.02 1.43 16 16 C -0.14 -3.34 9.46 71.98 0.68 -2.66 16 17 N -0.69 -19.67 6.34 -469.04 -2.97 -22.64 16 18 C 0.09 2.64 3.69 44.92 0.17 2.81 16 19 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 20 C -0.16 -4.34 8.83 71.98 0.64 -3.71 16 21 C 0.07 2.78 4.39 86.31 0.38 3.16 16 22 H 0.05 2.66 6.51 -2.39 -0.02 2.64 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.03 1.54 6.45 -2.39 -0.02 1.53 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.01 0.59 7.23 -2.39 -0.02 0.58 16 27 H 0.05 2.25 8.09 -2.39 -0.02 2.23 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.35 7.83 8.81 -89.69 -0.79 7.04 16 32 H 0.05 1.61 5.94 -2.39 -0.01 1.60 16 33 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.01 0.67 6.24 -2.38 -0.01 0.65 16 36 H 0.06 2.60 6.28 -2.39 -0.01 2.59 16 Total: -1.00 -60.72 271.40 -0.16 -60.88 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.26 Total: 11.68 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 3.76 Total: -16.96 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -6.21 Total: -102.31 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -60.72 -0.16 -60.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.363 kcal (2) G-P(sol) polarization free energy of solvation -60.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds