Wall clock time and date at job start Mon Mar 30 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46705 * 2 1 4 4 C 1.50696 * 109.47158 * 119.99773 * 2 1 3 5 5 H 1.08001 * 119.99708 * 120.00177 * 4 2 1 6 6 C 1.37875 * 120.00259 * 300.00277 * 4 2 1 7 7 N 1.31519 * 119.99603 * 180.02562 * 6 4 2 8 8 Si 1.86790 * 120.00126 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47300 * 89.99833 * 8 6 4 10 10 H 1.48500 * 109.47344 * 210.00177 * 8 6 4 11 11 H 1.48497 * 109.47181 * 330.00147 * 8 6 4 12 12 N 1.46896 * 109.47176 * 240.00527 * 2 1 3 13 13 C 1.46846 * 110.99998 * 184.21023 * 12 2 1 14 14 C 1.53042 * 109.52384 * 174.15789 * 13 12 2 15 15 C 1.53120 * 109.27679 * 59.17688 * 14 13 12 16 16 H 1.09002 * 109.52444 * 62.25092 * 15 14 13 17 17 C 1.52996 * 109.57212 * 182.40680 * 15 14 13 18 18 C 1.53114 * 109.16161 * 302.34397 * 15 14 13 19 19 H 1.08997 * 109.50718 * 177.59550 * 18 15 14 20 20 N 1.46900 * 109.53653 * 297.69526 * 18 15 14 21 21 C 1.46850 * 111.00472 * 59.99612 * 12 2 1 22 22 H 1.09004 * 109.46705 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47238 * 299.99917 * 1 2 3 24 24 H 1.09002 * 109.47595 * 60.00250 * 1 2 3 25 25 H 0.97003 * 119.99256 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.46639 * 54.13954 * 13 12 2 27 27 H 1.09010 * 109.45973 * 294.17120 * 13 12 2 28 28 H 1.08998 * 109.50041 * 299.23667 * 14 13 12 29 29 H 1.08998 * 109.53568 * 179.13417 * 14 13 12 30 30 H 1.09008 * 109.47217 * 179.71489 * 17 15 14 31 31 H 1.09000 * 109.47438 * 299.71302 * 17 15 14 32 32 H 1.08997 * 109.47135 * 59.71850 * 17 15 14 33 33 H 1.00906 * 111.00090 * 179.81978 * 20 18 15 34 34 H 1.00896 * 111.00221 * 303.77703 * 20 18 15 35 35 H 1.08995 * 109.45831 * 65.81919 * 21 12 2 36 36 H 1.08998 * 109.45719 * 305.85769 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8029 0.8724 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8468 2.1764 1.4921 12 7 2.0197 -0.6924 -1.1995 13 6 3.4841 -0.7997 -1.1841 14 6 3.9471 -1.6499 -2.3695 15 6 3.4780 -0.9978 -3.6731 16 1 3.9351 -0.0133 -3.7729 17 6 3.8854 -1.8734 -4.8597 18 6 1.9540 -0.8536 -3.6429 19 1 1.6179 -0.3512 -4.5499 20 7 1.3362 -2.1839 -3.5616 21 6 1.5488 -0.0265 -2.4207 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.9034 -0.5279 4.4375 26 1 3.8042 -1.2688 -0.2538 27 1 3.9220 0.1958 -1.2582 28 1 3.5206 -2.6497 -2.2887 29 1 5.0350 -1.7170 -2.3671 30 1 3.5463 -1.4102 -5.7864 31 1 4.9704 -1.9754 -4.8804 32 1 3.4296 -2.8583 -4.7579 33 1 0.3298 -2.1144 -3.5374 34 1 1.6399 -2.7709 -4.3240 35 1 1.9957 0.9653 -2.4888 36 1 0.4632 0.0659 -2.3883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069719693.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:39 Heat of formation + Delta-G solvation = 6.875673 kcal Electronic energy + Delta-G solvation = -15223.872679 eV Core-core repulsion = 12935.857905 eV Total energy + Delta-G solvation = -2288.014774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.97035 -35.46017 -32.44605 -32.17249 -30.17373 -28.43644 -26.54148 -24.96359 -22.16328 -21.76665 -19.69742 -18.52321 -16.68929 -15.83424 -15.52323 -14.70889 -14.15395 -13.81919 -13.52156 -13.21104 -12.73688 -12.69030 -12.38657 -12.22340 -11.81396 -11.63693 -11.28271 -10.98866 -10.67099 -10.45555 -10.31378 -10.11990 -9.87355 -9.62519 -9.40853 -8.88006 -8.49753 -8.15752 -7.09760 -6.00691 -3.98143 3.30308 3.39850 3.42138 4.44924 4.71514 5.00517 5.02237 5.14012 5.22246 5.31595 5.61571 5.69843 5.83917 5.98392 6.02988 6.04660 6.16466 6.19408 6.34133 6.39460 6.42344 6.51701 6.60963 6.66664 6.85797 7.00074 7.06398 7.39799 7.52039 7.70893 7.81021 8.11666 8.28706 8.76699 9.07474 9.62041 11.12172 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050008 B = 0.009114 C = 0.008384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.780611 B = 3071.473523 C = 3338.896007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.180 3.820 3 H -0.008 1.008 4 C -0.500 4.500 5 H 0.084 0.916 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.271 1.271 12 N -0.501 5.501 13 C 0.066 3.934 14 C -0.102 4.102 15 C -0.088 4.088 16 H 0.062 0.938 17 C -0.147 4.147 18 C 0.104 3.896 19 H 0.023 0.977 20 N -0.822 5.822 21 C 0.056 3.944 22 H 0.061 0.939 23 H 0.038 0.962 24 H 0.026 0.974 25 H 0.263 0.737 26 H 0.091 0.909 27 H 0.011 0.989 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.337 0.663 34 H 0.329 0.671 35 H 0.020 0.980 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 0.693 -14.978 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.073 3.927 3 H 0.009 0.991 4 C -0.538 4.538 5 H 0.102 0.898 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.196 1.196 12 N -0.225 5.225 13 C -0.062 4.062 14 C -0.140 4.140 15 C -0.107 4.107 16 H 0.080 0.920 17 C -0.204 4.204 18 C -0.008 4.008 19 H 0.041 0.959 20 N -0.353 5.353 21 C -0.073 4.073 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.029 0.971 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.038 0.962 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.348 0.161 -14.071 14.077 hybrid contribution -0.800 1.998 -0.699 2.263 sum -0.452 2.160 -14.770 14.934 Atomic orbital electron populations 1.22177 0.98708 1.01290 0.97826 1.19672 0.91370 0.92358 0.89313 0.99074 1.21015 1.31564 1.13392 0.87878 0.89812 1.24930 0.95909 0.96581 0.95874 1.69890 1.45948 1.40344 0.97806 0.86878 0.80797 0.83928 0.76641 1.20646 1.22619 1.19599 1.61715 1.09289 1.51232 1.00298 1.21963 0.88240 0.97026 0.98991 1.21561 0.98321 1.01083 0.93051 1.21222 0.94785 0.98807 0.95911 0.91994 1.21834 1.01115 1.00224 0.97232 1.21318 0.94218 0.89877 0.95363 0.95908 1.58480 1.12079 1.12847 1.51848 1.22122 1.00106 0.93814 0.91301 0.91943 0.94316 0.95530 0.92743 0.89083 0.97079 0.90145 0.93176 0.93650 0.92854 0.92143 0.85061 0.85798 0.96198 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.45 37.16 0.31 -2.91 16 2 C 0.18 4.41 1.66 -68.87 -0.11 4.30 16 3 H -0.01 -0.21 7.20 -51.93 -0.37 -0.58 16 4 C -0.50 -14.25 8.44 -34.44 -0.29 -14.54 16 5 H 0.08 2.59 6.64 -52.49 -0.35 2.24 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 8 Si 0.89 22.45 24.37 -169.99 -4.14 18.31 16 9 H -0.28 -6.90 6.87 56.52 0.39 -6.51 16 10 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 11 H -0.27 -6.64 6.53 56.52 0.37 -6.27 16 12 N -0.50 -10.64 4.37 -228.08 -1.00 -11.64 16 13 C 0.07 1.34 5.21 -3.83 -0.02 1.32 16 14 C -0.10 -1.68 5.22 -26.65 -0.14 -1.81 16 15 C -0.09 -1.23 2.61 -90.50 -0.24 -1.47 16 16 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.15 -1.64 8.82 37.16 0.33 -1.31 16 18 C 0.10 1.50 3.14 -67.63 -0.21 1.29 16 19 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 20 N -0.82 -11.31 8.42 -4.60 -0.04 -11.34 16 21 C 0.06 0.99 4.84 -3.83 -0.02 0.97 16 22 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 23 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 24 H 0.03 0.51 6.28 -51.93 -0.33 0.19 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.09 2.09 6.02 -51.93 -0.31 1.78 16 27 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 28 H 0.08 1.42 7.73 -51.93 -0.40 1.02 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 33 H 0.34 4.35 9.04 -39.29 -0.36 3.99 16 34 H 0.33 3.80 6.98 -39.29 -0.27 3.52 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 1.20 6.01 -51.93 -0.31 0.89 16 LS Contribution 264.62 15.07 3.99 3.99 Total: -1.00 -30.35 264.62 -6.68 -37.03 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.78 Total: 3.03 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.49 Total: -12.28 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.26 Total: -50.06 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.35 -6.68 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069719693.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.902 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds