Wall clock time and date at job start Mon Mar 30 2020 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52356 * 2 1 4 4 C 1.53119 * 109.57543 * 239.83866 * 2 1 3 5 5 C 1.53036 * 109.27852 * 182.41012 * 4 2 1 6 6 N 1.46840 * 109.52594 * 59.18079 * 5 4 2 7 7 C 1.46901 * 111.00497 * 174.16016 * 6 5 4 8 8 C 1.53001 * 109.46799 * 314.21084 * 7 6 5 9 9 C 1.50699 * 109.46973 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99910 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00210 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99716 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47107 * 59.99912 * 13 11 9 15 15 H 1.48507 * 109.46694 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47041 * 299.99747 * 13 11 9 17 17 C 1.46847 * 111.19808 * 298.26202 * 6 5 4 18 18 C 1.53032 * 109.52562 * 61.73611 * 17 6 5 19 19 H 1.08999 * 109.50437 * 180.88272 * 18 17 6 20 20 N 1.46896 * 109.53741 * 60.78563 * 18 17 6 21 21 H 1.09000 * 109.47273 * 300.00369 * 1 2 3 22 22 H 1.09004 * 109.47320 * 60.00282 * 1 2 3 23 23 H 1.09001 * 109.47399 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.50798 * 302.35397 * 4 2 1 25 25 H 1.09001 * 109.50084 * 62.46778 * 4 2 1 26 26 H 1.09000 * 109.46467 * 299.16383 * 5 4 2 27 27 H 1.09000 * 109.45126 * 179.19505 * 5 4 2 28 28 H 1.08996 * 109.46812 * 74.20723 * 7 6 5 29 29 H 1.09002 * 109.47094 * 194.20971 * 7 6 5 30 30 H 1.08999 * 109.47418 * 299.99890 * 8 7 6 31 31 H 1.09002 * 109.46941 * 59.99779 * 8 7 6 32 32 H 0.97000 * 120.00576 * 179.97438 * 12 11 9 33 33 H 1.09004 * 109.45626 * 301.72265 * 17 6 5 34 34 H 1.08999 * 109.46589 * 181.75795 * 17 6 5 35 35 H 1.00908 * 110.99794 * 60.17144 * 20 18 17 36 36 H 1.00900 * 111.00795 * 184.12915 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7249 -1.2474 5 6 3.5722 -0.7736 -1.2104 6 7 4.0116 -1.4767 0.0016 7 6 5.4686 -1.6643 0.0025 8 6 5.9185 -2.1693 -1.3699 9 6 7.4132 -2.3612 -1.3693 10 1 7.9850 -2.1450 -0.4789 11 6 8.0507 -2.8137 -2.5050 12 7 7.3544 -3.0775 -3.5890 13 14 9.9034 -3.0522 -2.5039 14 1 10.2740 -4.0459 -1.4644 15 1 10.3400 -3.5435 -3.8356 16 1 10.5689 -1.7576 -2.2108 17 6 3.5708 -0.7731 1.2129 18 6 2.0417 -0.7243 1.2482 19 1 1.7152 -0.1884 2.1394 20 7 1.5070 -2.0923 1.2752 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6469 -1.7401 -1.2671 25 1 1.7174 -0.1893 -2.1392 26 1 3.9679 0.2420 -1.2047 27 1 3.9399 -1.3017 -2.0901 28 1 5.9571 -0.7140 0.2180 29 1 5.7405 -2.3939 0.7652 30 1 5.4300 -3.1195 -1.5855 31 1 5.6465 -1.4396 -2.1326 32 1 7.8028 -3.3955 -4.3881 33 1 3.9666 0.2425 1.2071 34 1 3.9378 -1.3008 2.0932 35 1 1.8309 -2.5911 2.0904 36 1 0.4990 -2.0876 1.2309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069720052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:29 Heat of formation + Delta-G solvation = -10.015031 kcal Electronic energy + Delta-G solvation = -14694.183713 eV Core-core repulsion = 12405.436503 eV Total energy + Delta-G solvation = -2288.747210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.10742 -35.34079 -32.80370 -32.30296 -29.83086 -28.75969 -26.77665 -24.02526 -22.66527 -21.88426 -19.70008 -18.69162 -16.49604 -15.94957 -15.21399 -14.66542 -14.41557 -14.20889 -13.92720 -13.25778 -12.88714 -12.65840 -12.31040 -12.05529 -11.98037 -11.65512 -11.14234 -10.96791 -10.88335 -10.52643 -10.42378 -10.17856 -9.93630 -9.76885 -9.25186 -8.99538 -8.31278 -8.27461 -7.43492 -5.94878 -3.96941 3.36610 3.40696 3.43276 4.44545 4.57357 4.84847 4.87055 4.99610 5.09939 5.40806 5.46737 5.58014 5.68699 5.84571 5.86872 5.89050 5.96968 6.08332 6.20833 6.26525 6.31175 6.46868 6.55261 6.75539 6.84868 7.03671 7.37086 7.65706 7.67173 7.77236 7.94310 7.96978 8.15153 8.50144 9.09826 9.66242 11.16513 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063366 B = 0.006325 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.772509 B = 4425.996053 C = 4639.043821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.063 0.937 4 C -0.102 4.102 5 C 0.054 3.946 6 N -0.518 5.518 7 C 0.062 3.938 8 C 0.022 3.978 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.062 3.938 18 C 0.103 3.897 19 H 0.027 0.973 20 N -0.824 5.824 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.018 0.982 27 H 0.092 0.908 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.337 0.663 36 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.399 5.701 8.197 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.140 4.140 5 C -0.074 4.074 6 N -0.243 5.243 7 C -0.065 4.065 8 C -0.015 4.015 9 C -0.560 4.560 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.067 4.067 18 C -0.009 4.009 19 H 0.044 0.956 20 N -0.355 5.355 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.110 0.890 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.189 5.080 7.331 15.104 hybrid contribution 1.028 1.016 0.898 1.702 sum -11.161 6.096 8.230 15.148 Atomic orbital electron populations 1.21836 0.95751 1.01799 1.01085 1.21227 0.95045 0.98518 0.95975 0.91822 1.21547 0.95758 1.01450 0.95247 1.22153 0.94346 0.95936 0.94991 1.61904 1.13941 1.48110 1.00298 1.22312 0.84108 0.98181 1.01881 1.19223 0.95423 0.96950 0.89904 1.21173 0.92747 1.44317 0.97772 0.92910 1.24984 0.98133 0.95537 0.95622 1.69954 1.35518 1.45574 1.02290 0.86664 0.85803 0.78468 0.77082 1.20241 1.21285 1.20356 1.22040 0.93767 0.96103 0.94782 1.21324 0.94763 0.89281 0.95526 0.95564 1.58500 1.13130 1.15340 1.48552 0.93518 0.92709 0.92115 0.90052 0.92821 0.96405 0.89003 0.96779 0.92207 0.95608 0.96221 0.92973 0.95590 0.91622 0.84997 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.82 37.16 0.33 -1.18 16 2 C -0.09 -1.13 2.61 -90.50 -0.24 -1.37 16 3 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.10 -1.55 5.22 -26.65 -0.14 -1.69 16 5 C 0.05 1.00 4.85 -3.84 -0.02 0.98 16 6 N -0.52 -9.97 4.66 -234.68 -1.09 -11.06 16 7 C 0.06 1.38 5.21 -3.82 -0.02 1.36 16 8 C 0.02 0.59 4.22 -27.88 -0.12 0.48 16 9 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 10 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 13 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.06 0.98 5.05 -3.84 -0.02 0.96 16 18 C 0.10 1.34 3.14 -67.64 -0.21 1.12 16 19 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 20 N -0.82 -10.27 8.42 -4.60 -0.04 -10.31 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.61 6.54 -51.93 -0.34 0.27 16 24 H 0.08 1.33 7.73 -51.93 -0.40 0.93 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 1.96 5.81 -51.93 -0.30 1.66 16 28 H 0.01 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 35 H 0.34 3.88 9.04 -39.29 -0.36 3.53 16 36 H 0.33 3.46 6.96 -39.29 -0.27 3.18 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -30.53 278.74 -8.24 -38.78 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.18 Total: 1.14 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.85 Total: -13.17 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.40 Total: -47.94 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.53 -8.24 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069720052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.761 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds