Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52356 * 2 1 4 4 C 1.53119 * 109.57543 * 239.83866 * 2 1 3 5 5 C 1.53036 * 109.27852 * 182.41012 * 4 2 1 6 6 N 1.46840 * 109.52594 * 59.18079 * 5 4 2 7 7 C 1.46901 * 111.00497 * 174.16016 * 6 5 4 8 8 C 1.53001 * 109.46799 * 314.21084 * 7 6 5 9 9 C 1.50699 * 109.46973 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99910 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00210 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99716 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47107 * 59.99912 * 13 11 9 15 15 H 1.48507 * 109.46694 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47041 * 299.99747 * 13 11 9 17 17 C 1.46847 * 111.19808 * 298.26202 * 6 5 4 18 18 C 1.53032 * 109.52562 * 61.73611 * 17 6 5 19 19 H 1.08999 * 109.50437 * 180.88272 * 18 17 6 20 20 N 1.46896 * 109.53741 * 60.78563 * 18 17 6 21 21 H 1.09000 * 109.47273 * 300.00369 * 1 2 3 22 22 H 1.09004 * 109.47320 * 60.00282 * 1 2 3 23 23 H 1.09001 * 109.47399 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.50798 * 302.35397 * 4 2 1 25 25 H 1.09001 * 109.50084 * 62.46778 * 4 2 1 26 26 H 1.09000 * 109.46467 * 299.16383 * 5 4 2 27 27 H 1.09000 * 109.45126 * 179.19505 * 5 4 2 28 28 H 1.08996 * 109.46812 * 74.20723 * 7 6 5 29 29 H 1.09002 * 109.47094 * 194.20971 * 7 6 5 30 30 H 1.08999 * 109.47418 * 299.99890 * 8 7 6 31 31 H 1.09002 * 109.46941 * 59.99779 * 8 7 6 32 32 H 0.97000 * 120.00576 * 179.97438 * 12 11 9 33 33 H 1.09004 * 109.45626 * 301.72265 * 17 6 5 34 34 H 1.08999 * 109.46589 * 181.75795 * 17 6 5 35 35 H 1.00908 * 110.99794 * 60.17144 * 20 18 17 36 36 H 1.00900 * 111.00795 * 184.12915 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7249 -1.2474 5 6 3.5722 -0.7736 -1.2104 6 7 4.0116 -1.4767 0.0016 7 6 5.4686 -1.6643 0.0025 8 6 5.9185 -2.1693 -1.3699 9 6 7.4132 -2.3612 -1.3693 10 1 7.9850 -2.1450 -0.4789 11 6 8.0507 -2.8137 -2.5050 12 7 7.3544 -3.0775 -3.5890 13 14 9.9034 -3.0522 -2.5039 14 1 10.2740 -4.0459 -1.4644 15 1 10.3400 -3.5435 -3.8356 16 1 10.5689 -1.7576 -2.2108 17 6 3.5708 -0.7731 1.2129 18 6 2.0417 -0.7243 1.2482 19 1 1.7152 -0.1884 2.1394 20 7 1.5070 -2.0923 1.2752 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6469 -1.7401 -1.2671 25 1 1.7174 -0.1893 -2.1392 26 1 3.9679 0.2420 -1.2047 27 1 3.9399 -1.3017 -2.0901 28 1 5.9571 -0.7140 0.2180 29 1 5.7405 -2.3939 0.7652 30 1 5.4300 -3.1195 -1.5855 31 1 5.6465 -1.4396 -2.1326 32 1 7.8028 -3.3955 -4.3881 33 1 3.9666 0.2425 1.2071 34 1 3.9378 -1.3008 2.0932 35 1 1.8309 -2.5911 2.0904 36 1 0.4990 -2.0876 1.2309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069720052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = -32.136076 kcal Electronic energy + Delta-G solvation = -14695.142953 eV Core-core repulsion = 12405.436503 eV Total energy + Delta-G solvation = -2289.706450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39603 -36.85055 -34.88177 -33.41995 -31.68066 -29.94984 -28.26310 -25.84805 -24.13651 -23.20557 -21.44800 -19.85878 -18.61998 -17.07327 -16.60410 -16.52422 -15.90076 -15.68217 -15.36145 -14.64220 -14.26601 -14.02485 -13.75619 -13.58462 -13.25725 -13.17907 -12.82074 -12.63686 -12.37930 -12.29417 -11.92760 -11.63708 -11.51764 -11.30741 -11.04688 -10.97002 -10.52824 -9.26444 -9.00217 -8.19737 -6.31631 1.39557 1.43378 1.51296 2.40552 3.12623 3.13669 3.75877 3.80138 3.94096 4.06330 4.30447 4.46304 4.49649 4.53521 4.61545 4.69744 4.75932 4.87401 4.91959 4.93516 5.02604 5.09647 5.22614 5.27332 5.39480 5.45274 5.60378 5.68685 5.79572 6.13524 6.34171 6.39709 6.57653 6.83110 6.85094 7.37311 8.92187 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063366 B = 0.006325 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.772509 B = 4425.996053 C = 4639.043821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.094 4.094 5 C 0.055 3.945 6 N -0.525 5.525 7 C 0.077 3.923 8 C 0.033 3.967 9 C -0.548 4.548 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.058 3.942 18 C 0.108 3.892 19 H 0.053 0.947 20 N -0.838 5.838 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.014 0.986 27 H 0.052 0.948 28 H 0.013 0.987 29 H 0.060 0.940 30 H -0.009 1.009 31 H -0.001 1.001 32 H 0.264 0.736 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.343 0.657 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.812 6.406 9.584 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.132 4.132 5 C -0.073 4.073 6 N -0.249 5.249 7 C -0.051 4.051 8 C -0.004 4.004 9 C -0.586 4.586 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.192 1.192 17 C -0.071 4.071 18 C -0.003 4.003 19 H 0.071 0.929 20 N -0.371 5.371 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.009 0.991 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.627 5.791 8.739 16.412 hybrid contribution 1.123 0.792 0.448 1.446 sum -11.504 6.584 9.187 16.127 Atomic orbital electron populations 1.21767 0.93314 1.02361 1.02309 1.21228 0.97026 0.98077 0.94269 0.91537 1.21466 0.92714 1.01449 0.97540 1.22086 0.96997 0.94815 0.93398 1.61876 1.11603 1.49480 1.01979 1.21986 0.86476 0.97792 0.98818 1.19022 0.94624 0.94688 0.92081 1.21608 0.93929 1.44750 0.98310 0.92314 1.25974 1.03785 0.94838 0.95010 1.70100 1.37885 1.46140 1.03036 0.85466 0.78927 0.78946 0.77480 1.19117 1.20656 1.19166 1.22207 0.96155 0.95743 0.92986 1.21268 0.92434 0.89975 0.96662 0.92896 1.58444 1.14313 1.15204 1.49182 0.91675 0.92162 0.91885 0.91272 0.91650 0.96783 0.92946 0.96841 0.92177 0.99102 0.98323 0.92707 0.95400 0.90974 0.84373 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.82 71.98 0.64 -1.78 16 2 C -0.09 -2.02 2.61 -10.71 -0.03 -2.05 16 3 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 4 C -0.09 -2.80 5.22 30.65 0.16 -2.64 16 5 C 0.06 2.12 4.85 86.33 0.42 2.54 16 6 N -0.52 -20.39 4.66 -896.38 -4.18 -24.56 16 7 C 0.08 3.50 5.21 86.30 0.45 3.95 16 8 C 0.03 1.85 4.22 29.85 0.13 1.98 16 9 C -0.55 -32.45 9.11 25.60 0.23 -32.21 16 10 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 11 C 0.00 0.11 5.46 84.66 0.46 0.58 16 12 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 13 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C 0.06 1.74 5.05 86.32 0.44 2.17 16 18 C 0.11 2.54 3.14 44.97 0.14 2.68 16 19 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 20 N -0.84 -19.10 8.42 -168.48 -1.42 -20.52 16 21 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.06 1.07 6.54 -2.39 -0.02 1.05 16 24 H 0.07 2.24 7.73 -2.39 -0.02 2.22 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 2.40 5.81 -2.39 -0.01 2.38 16 28 H 0.01 0.61 8.08 -2.39 -0.02 0.59 16 29 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.00 -0.09 6.21 -2.39 -0.01 -0.10 16 32 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 35 H 0.34 7.17 9.04 -89.69 -0.81 6.36 16 36 H 0.34 6.27 6.96 -89.69 -0.62 5.65 16 Total: -1.00 -66.76 278.74 -0.63 -67.39 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -0.38 Total: 13.22 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.03 Total: -24.78 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.31 Total: -103.10 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -66.76 -0.63 -67.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069720052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.255 kcal (2) G-P(sol) polarization free energy of solvation -66.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds