Wall clock time and date at job start Mon Mar 30 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.52469 * 2 1 4 4 C 1.53112 * 109.52306 * 120.13066 * 2 1 3 5 5 C 1.53047 * 109.27842 * 177.62028 * 4 2 1 6 6 N 1.46847 * 109.52230 * 300.82413 * 5 4 2 7 7 C 1.46898 * 110.99815 * 185.84078 * 6 5 4 8 8 C 1.52992 * 109.47518 * 66.04035 * 7 6 5 9 9 C 1.50700 * 109.47257 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47088 * 89.99795 * 13 11 9 15 15 H 1.48495 * 109.47293 * 209.99997 * 13 11 9 16 16 H 1.48507 * 109.47015 * 329.99955 * 13 11 9 17 17 C 1.46847 * 111.20221 * 61.73425 * 6 5 4 18 18 C 1.53035 * 109.52529 * 298.26322 * 17 6 5 19 19 H 1.08993 * 109.53339 * 299.21258 * 18 17 6 20 20 N 1.46901 * 109.50196 * 179.11733 * 18 17 6 21 21 H 1.09004 * 109.46978 * 299.86896 * 1 2 3 22 22 H 1.09001 * 109.47109 * 59.86779 * 1 2 3 23 23 H 1.09001 * 109.47153 * 179.87623 * 1 2 3 24 24 H 1.09007 * 109.50764 * 57.68157 * 4 2 1 25 25 H 1.09001 * 109.53830 * 297.57967 * 4 2 1 26 26 H 1.08991 * 109.46141 * 180.80246 * 5 4 2 27 27 H 1.09003 * 109.45059 * 60.83078 * 5 4 2 28 28 H 1.09004 * 109.46827 * 306.03719 * 7 6 5 29 29 H 1.09005 * 109.47082 * 186.04257 * 7 6 5 30 30 H 1.09004 * 109.47330 * 59.99991 * 8 7 6 31 31 H 1.08997 * 109.47279 * 300.00478 * 8 7 6 32 32 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 33 33 H 1.09008 * 109.45663 * 58.27623 * 17 6 5 34 34 H 1.09000 * 109.46114 * 178.23816 * 17 6 5 35 35 H 1.00898 * 110.99949 * 60.19544 * 20 18 17 36 36 H 1.00893 * 111.00027 * 184.14814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2481 5 6 3.5710 -0.7732 1.2127 6 7 4.0116 -1.4766 0.0013 7 6 5.4685 -1.6643 0.0021 8 6 5.8600 -2.6130 1.1367 9 6 7.3546 -2.8059 1.1371 10 1 7.9643 -2.3025 0.4013 11 6 7.9437 -3.6259 2.0761 12 7 7.2018 -4.2353 2.9749 13 14 9.7964 -3.8645 2.0770 14 1 10.4275 -2.8360 2.9426 15 1 10.1211 -5.2167 2.5977 16 1 10.3134 -3.7303 0.6913 17 6 3.5720 -0.7735 -1.2106 18 6 2.0429 -0.7248 -1.2475 19 1 1.6463 -1.7398 -1.2676 20 7 1.6041 -0.0029 -2.4493 21 1 -0.3633 0.5118 0.8912 22 1 -0.3633 0.5159 -0.8888 23 1 -0.3633 -1.0277 -0.0022 24 1 1.6456 -1.7398 1.2677 25 1 1.7153 -0.1892 2.1398 26 1 3.9379 -1.3009 2.0929 27 1 3.9665 0.2425 1.2070 28 1 5.9587 -0.7016 0.1479 29 1 5.7805 -2.0901 -0.9516 30 1 5.3699 -3.5756 0.9910 31 1 5.5480 -2.1872 2.0904 32 1 7.6162 -4.8125 3.6353 33 1 3.9678 0.2421 -1.2049 34 1 3.9400 -1.3015 -2.0904 35 1 1.9305 -0.4622 -3.2863 36 1 0.6007 0.1016 -2.4621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069720054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:31 Heat of formation + Delta-G solvation = -39.569754 kcal Electronic energy + Delta-G solvation = -14529.378613 eV Core-core repulsion = 12239.349814 eV Total energy + Delta-G solvation = -2290.028799 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38324 -36.87289 -34.98339 -33.82609 -31.78377 -29.77691 -28.27093 -25.90012 -23.75498 -23.25611 -21.56834 -20.52040 -18.61482 -16.91683 -16.61856 -16.49653 -16.17079 -15.79059 -15.37633 -14.68765 -14.46431 -14.09052 -13.81392 -13.45272 -13.33122 -13.26369 -12.83469 -12.67208 -12.43288 -12.41800 -11.89842 -11.71288 -11.54091 -11.36529 -11.16067 -11.02118 -10.53706 -9.61188 -9.20579 -8.20734 -6.32274 1.39912 1.41614 1.52859 2.39815 2.94311 3.12575 3.66756 3.77123 3.88202 3.99813 4.29133 4.33307 4.46810 4.50092 4.54443 4.59814 4.80587 4.83106 4.88084 4.96947 4.97940 5.05662 5.16200 5.20381 5.33710 5.45144 5.47635 5.65574 5.77757 6.08965 6.17373 6.30541 6.37937 6.64782 6.84470 7.36814 8.91557 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063066 B = 0.006030 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.873930 B = 4642.478942 C = 4942.055060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 H 0.067 0.933 4 C -0.104 4.104 5 C 0.052 3.948 6 N -0.548 5.548 7 C 0.080 3.920 8 C 0.038 3.962 9 C -0.547 4.547 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.263 1.263 17 C 0.064 3.936 18 C 0.107 3.893 19 H 0.036 0.964 20 N -0.846 5.846 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.026 0.974 28 H 0.017 0.983 29 H 0.062 0.938 30 H -0.008 1.008 31 H -0.005 1.005 32 H 0.264 0.736 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.348 0.652 36 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 8.296 -7.573 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.142 4.142 5 C -0.076 4.076 6 N -0.273 5.273 7 C -0.047 4.047 8 C 0.000 4.000 9 C -0.585 4.585 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.187 1.187 17 C -0.064 4.064 18 C -0.005 4.005 19 H 0.054 0.946 20 N -0.379 5.379 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.011 0.989 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.161 0.839 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.207 8.332 -7.160 16.423 hybrid contribution 1.013 -0.531 0.115 1.149 sum -11.194 7.801 -7.045 15.356 Atomic orbital electron populations 1.21790 0.93249 1.02025 1.02767 1.21165 0.96985 0.98942 0.93090 0.91473 1.21626 0.92888 1.01184 0.98544 1.22123 0.96984 0.95523 0.92923 1.61880 1.13081 1.49811 1.02564 1.21957 0.85662 0.97425 0.99687 1.18914 0.94631 0.93619 0.92827 1.21626 0.93686 1.28132 1.15050 0.92273 1.25966 1.03587 0.95154 0.94867 1.70113 1.37553 1.31261 1.18226 0.85415 0.79036 0.77572 0.78819 1.19732 1.20585 1.18725 1.22024 0.95934 0.96106 0.92383 1.21160 0.93117 0.95114 0.91113 0.94567 1.58629 1.18643 1.56755 1.03891 0.91665 0.91208 0.92727 0.91852 0.89849 0.92493 0.95618 0.96480 0.91923 0.98937 0.98641 0.92708 0.95332 0.91269 0.83918 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.92 71.98 0.64 -1.81 16 2 C -0.08 -1.94 2.48 -10.72 -0.03 -1.97 16 3 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.10 -2.87 5.38 30.65 0.16 -2.71 16 5 C 0.05 1.88 5.29 86.33 0.46 2.33 16 6 N -0.55 -21.01 4.65 -896.35 -4.17 -25.19 16 7 C 0.08 3.59 4.90 86.30 0.42 4.02 16 8 C 0.04 2.07 4.91 29.85 0.15 2.22 16 9 C -0.55 -32.00 9.11 25.60 0.23 -31.76 16 10 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 11 C 0.00 0.13 5.46 84.66 0.46 0.59 16 12 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 13 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 C 0.06 1.99 5.04 86.33 0.43 2.43 16 18 C 0.11 2.66 2.90 44.97 0.13 2.79 16 19 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 20 N -0.85 -16.41 9.24 -168.47 -1.56 -17.97 16 21 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.07 1.01 6.65 -2.39 -0.02 0.99 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 2.36 6.22 -2.39 -0.01 2.34 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.02 0.76 8.12 -2.38 -0.02 0.74 16 29 H 0.06 2.74 7.98 -2.38 -0.02 2.72 16 30 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 31 H 0.00 -0.28 6.44 -2.39 -0.02 -0.29 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 2.10 8.01 -2.39 -0.02 2.08 16 35 H 0.35 5.94 9.04 -89.70 -0.81 5.13 16 36 H 0.35 5.37 7.15 -89.70 -0.64 4.73 16 Total: -1.00 -65.29 281.37 -0.75 -66.04 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.40 Total: 11.53 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 3.07 Total: -23.87 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -5.44 Total: -100.60 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.29 -0.75 -66.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069720054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.473 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds