Wall clock time and date at job start Mon Mar 30 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 N 1.46899 * 109.46796 * 240.00247 * 2 1 3 5 5 C 1.52996 * 109.47243 * 120.00053 * 2 1 3 6 6 H 1.08995 * 109.50636 * 60.07738 * 5 2 1 7 7 C 1.53116 * 109.50557 * 299.99628 * 5 2 1 8 8 C 1.53111 * 109.16549 * 182.36737 * 7 5 2 9 9 C 1.53038 * 109.28047 * 57.65719 * 8 7 5 10 10 N 1.46848 * 109.52197 * 300.82344 * 9 8 7 11 11 C 1.46895 * 111.00373 * 185.83422 * 10 9 8 12 12 C 1.50702 * 109.46770 * 66.04522 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.46854 * 111.19746 * 61.73760 * 10 9 8 21 21 H 1.09003 * 109.46695 * 299.99610 * 1 2 3 22 22 H 1.08995 * 109.47366 * 59.99807 * 1 2 3 23 23 H 1.09004 * 109.46558 * 180.02562 * 1 2 3 24 24 H 1.00893 * 111.00041 * 299.99062 * 4 2 1 25 25 H 1.00896 * 111.00430 * 63.95179 * 4 2 1 26 26 H 1.09004 * 109.52274 * 62.46237 * 7 5 2 27 27 H 1.09000 * 109.57820 * 302.31078 * 7 5 2 28 28 H 1.08996 * 109.50249 * 297.71755 * 8 7 5 29 29 H 1.09000 * 109.51061 * 177.59929 * 8 7 5 30 30 H 1.08994 * 109.46822 * 180.80723 * 9 8 7 31 31 H 1.08996 * 109.46067 * 60.83220 * 9 8 7 32 32 H 1.09004 * 109.47258 * 306.04846 * 11 10 9 33 33 H 1.08994 * 109.47601 * 186.04438 * 11 10 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46219 * 58.27965 * 20 10 9 36 36 H 1.08997 * 109.46172 * 178.24258 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7212 1.2492 6 1 1.6782 -1.7494 1.2491 7 6 1.5302 0.0000 2.4999 8 6 2.0930 -0.6925 3.7441 9 6 3.6219 -0.6903 3.6755 10 7 4.0597 -1.3924 2.4623 11 6 5.5218 -1.5309 2.4327 12 6 5.9630 -2.4391 3.5514 13 1 5.2304 -2.8707 4.2175 14 6 7.3013 -2.7242 3.7209 15 7 8.1933 -2.1990 2.9096 16 14 7.8474 -3.8561 5.1028 17 1 7.2159 -5.1890 4.9298 18 1 9.3251 -4.0000 5.0701 19 1 7.4356 -3.2789 6.4076 20 6 3.5704 -0.7181 1.2529 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.6962 -1.6479 -1.2227 25 1 1.7502 -0.1990 -2.0372 26 1 0.4410 -0.0376 2.5235 27 1 1.8584 1.0392 2.4816 28 1 1.7320 -1.7202 3.7832 29 1 1.7681 -0.1579 4.6367 30 1 4.0256 -1.1954 4.5529 31 1 3.9828 0.3378 3.6503 32 1 5.9822 -0.5507 2.5574 33 1 5.8272 -1.9568 1.4771 34 1 9.1349 -2.3993 3.0291 35 1 3.9316 0.3102 1.2390 36 1 3.9367 -1.2434 0.3709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069725601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:28 Heat of formation + Delta-G solvation = -17.262414 kcal Electronic energy + Delta-G solvation = -14717.683713 eV Core-core repulsion = 12428.622233 eV Total energy + Delta-G solvation = -2289.061480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.79694 -35.81840 -33.16010 -31.71247 -29.84996 -28.51204 -26.67661 -23.92067 -22.71646 -21.49875 -19.95354 -19.19428 -16.30610 -15.93768 -15.00356 -14.49161 -14.24426 -14.09728 -13.75233 -13.36209 -12.98484 -12.91311 -12.47225 -11.99908 -11.78109 -11.46055 -11.19734 -11.05719 -10.72178 -10.57201 -10.45230 -10.19709 -10.01665 -9.85012 -9.49983 -9.05847 -8.54413 -8.35581 -7.06490 -5.94883 -3.95944 3.37984 3.41620 3.44826 4.47990 4.58877 4.76747 5.12416 5.22075 5.30994 5.39655 5.41236 5.47070 5.51146 5.80872 5.89092 6.00152 6.08121 6.11046 6.14898 6.28881 6.39185 6.42699 6.63359 6.80540 6.85650 6.89411 7.25734 7.45010 7.47771 7.54237 7.89898 8.22771 8.36668 8.69368 9.11967 9.67729 11.15980 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049260 B = 0.007102 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.278700 B = 3941.853538 C = 4307.933117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 H 0.075 0.925 4 N -0.841 5.841 5 C -0.074 4.074 6 H 0.072 0.928 7 C -0.113 4.113 8 C -0.116 4.116 9 C 0.064 3.936 10 N -0.539 5.539 11 C 0.195 3.805 12 C -0.506 4.506 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.072 3.928 21 H 0.063 0.937 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.340 0.660 25 H 0.335 0.665 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.016 0.984 32 H -0.012 1.012 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.014 0.986 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 4.548 -3.961 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.021 4.021 3 H 0.094 0.906 4 N -0.369 5.369 5 C -0.093 4.093 6 H 0.091 0.909 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.065 4.065 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.544 4.544 13 H 0.080 0.920 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.057 4.057 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.152 0.848 25 H 0.147 0.853 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.034 0.966 32 H 0.006 0.994 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.512 4.217 -3.695 14.629 hybrid contribution -0.267 0.168 0.418 0.524 sum -13.779 4.386 -3.278 14.827 Atomic orbital electron populations 1.22682 0.98238 1.01834 1.01822 1.21475 0.91461 0.98321 0.90831 0.90632 1.58813 1.67598 1.06450 1.04028 1.21175 0.96737 0.99239 0.92188 0.90939 1.21646 0.99206 0.99089 0.95177 1.21612 0.96766 1.00637 0.96416 1.21927 0.93212 0.95847 0.95504 1.62003 1.15508 1.48835 1.00019 1.19668 0.80093 0.95428 0.97867 1.21161 0.91775 1.28009 1.13496 0.92000 1.24996 0.96701 0.96432 0.96556 1.69962 1.01488 1.44642 1.37837 0.86575 0.77244 0.81295 0.82349 1.20206 1.21405 1.20352 1.21908 0.92823 0.96296 0.94663 0.91838 0.93272 0.92744 0.84750 0.85288 0.92597 0.92727 0.91615 0.92606 0.90145 0.96631 0.99408 0.95200 0.92958 0.96778 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 9.13 37.16 0.34 -1.51 16 2 C 0.09 1.12 2.94 -67.71 -0.20 0.92 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 N -0.84 -9.97 8.49 -4.67 -0.04 -10.01 16 5 C -0.07 -1.12 2.09 -90.54 -0.19 -1.31 16 6 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.11 -1.60 4.86 -26.61 -0.13 -1.73 16 8 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 9 C 0.06 1.30 5.30 -3.83 -0.02 1.28 16 10 N -0.54 -12.23 4.65 -236.12 -1.10 -13.33 16 11 C 0.19 5.32 4.72 -4.98 -0.02 5.30 16 12 C -0.51 -14.66 8.43 -34.44 -0.29 -14.95 16 13 H 0.06 1.77 7.14 -52.49 -0.37 1.39 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 16 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 C 0.07 1.39 4.58 -3.83 -0.02 1.37 16 21 H 0.06 0.62 6.49 -51.93 -0.34 0.28 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.34 3.78 9.00 -39.30 -0.35 3.43 16 25 H 0.34 3.24 9.07 -39.29 -0.36 2.88 16 26 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.77 6.72 -51.93 -0.35 1.43 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 33 H 0.03 0.88 7.98 -51.93 -0.41 0.46 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 1.61 7.51 -51.93 -0.39 1.22 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -30.55 281.06 -8.25 -38.80 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.28 Total: 1.13 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.79 Total: -11.17 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.40 Total: -50.08 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.55 -8.25 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.538 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds