Wall clock time and date at job start Mon Mar 30 2020 03:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 N 1.46899 * 109.46796 * 240.00247 * 2 1 3 5 5 C 1.52996 * 109.47243 * 120.00053 * 2 1 3 6 6 H 1.08995 * 109.50636 * 60.07738 * 5 2 1 7 7 C 1.53116 * 109.50557 * 299.99628 * 5 2 1 8 8 C 1.53111 * 109.16549 * 182.36737 * 7 5 2 9 9 C 1.53038 * 109.28047 * 57.65719 * 8 7 5 10 10 N 1.46848 * 109.52197 * 300.82344 * 9 8 7 11 11 C 1.46895 * 111.00373 * 185.83422 * 10 9 8 12 12 C 1.50702 * 109.46770 * 66.04522 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.46854 * 111.19746 * 61.73760 * 10 9 8 21 21 H 1.09003 * 109.46695 * 299.99610 * 1 2 3 22 22 H 1.08995 * 109.47366 * 59.99807 * 1 2 3 23 23 H 1.09004 * 109.46558 * 180.02562 * 1 2 3 24 24 H 1.00893 * 111.00041 * 299.99062 * 4 2 1 25 25 H 1.00896 * 111.00430 * 63.95179 * 4 2 1 26 26 H 1.09004 * 109.52274 * 62.46237 * 7 5 2 27 27 H 1.09000 * 109.57820 * 302.31078 * 7 5 2 28 28 H 1.08996 * 109.50249 * 297.71755 * 8 7 5 29 29 H 1.09000 * 109.51061 * 177.59929 * 8 7 5 30 30 H 1.08994 * 109.46822 * 180.80723 * 9 8 7 31 31 H 1.08996 * 109.46067 * 60.83220 * 9 8 7 32 32 H 1.09004 * 109.47258 * 306.04846 * 11 10 9 33 33 H 1.08994 * 109.47601 * 186.04438 * 11 10 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46219 * 58.27965 * 20 10 9 36 36 H 1.08997 * 109.46172 * 178.24258 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7212 1.2492 6 1 1.6782 -1.7494 1.2491 7 6 1.5302 0.0000 2.4999 8 6 2.0930 -0.6925 3.7441 9 6 3.6219 -0.6903 3.6755 10 7 4.0597 -1.3924 2.4623 11 6 5.5218 -1.5309 2.4327 12 6 5.9630 -2.4391 3.5514 13 1 5.2304 -2.8707 4.2175 14 6 7.3013 -2.7242 3.7209 15 7 8.1933 -2.1990 2.9096 16 14 7.8474 -3.8561 5.1028 17 1 7.2159 -5.1890 4.9298 18 1 9.3251 -4.0000 5.0701 19 1 7.4356 -3.2789 6.4076 20 6 3.5704 -0.7181 1.2529 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.6962 -1.6479 -1.2227 25 1 1.7502 -0.1990 -2.0372 26 1 0.4410 -0.0376 2.5235 27 1 1.8584 1.0392 2.4816 28 1 1.7320 -1.7202 3.7832 29 1 1.7681 -0.1579 4.6367 30 1 4.0256 -1.1954 4.5529 31 1 3.9828 0.3378 3.6503 32 1 5.9822 -0.5507 2.5574 33 1 5.8272 -1.9568 1.4771 34 1 9.1349 -2.3993 3.0291 35 1 3.9316 0.3102 1.2390 36 1 3.9367 -1.2434 0.3709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069725601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:27 Heat of formation + Delta-G solvation = -39.849800 kcal Electronic energy + Delta-G solvation = -14718.663176 eV Core-core repulsion = 12428.622233 eV Total energy + Delta-G solvation = -2290.040943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21259 -37.17864 -35.05513 -33.47559 -31.21312 -29.69995 -28.50873 -25.61256 -24.19175 -23.17684 -21.26284 -20.62178 -18.47209 -17.27794 -16.58607 -16.03793 -15.78420 -15.49522 -15.19450 -14.87105 -14.25412 -14.14753 -13.93757 -13.53460 -13.42112 -12.99586 -12.80840 -12.53974 -12.44398 -12.29842 -11.96240 -11.79290 -11.60225 -11.40834 -11.06869 -10.91186 -10.61114 -9.47087 -8.97579 -8.20244 -6.31535 1.40232 1.44608 1.52566 2.40457 3.11123 3.30387 3.62076 3.93663 4.02535 4.14559 4.23142 4.35638 4.48398 4.53491 4.65417 4.79245 4.81499 4.93362 4.97729 5.03267 5.08682 5.10132 5.20611 5.24595 5.31279 5.35758 5.45442 5.56992 5.66414 6.06557 6.36676 6.40752 6.68307 6.73588 6.85410 7.38344 8.91046 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049260 B = 0.007102 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.278700 B = 3941.853538 C = 4307.933117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.097 3.903 3 H 0.070 0.930 4 N -0.857 5.857 5 C -0.066 4.066 6 H 0.068 0.932 7 C -0.109 4.109 8 C -0.108 4.108 9 C 0.061 3.939 10 N -0.544 5.544 11 C 0.209 3.791 12 C -0.525 4.525 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.937 5.937 16 Si 0.974 3.026 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.266 1.266 20 C 0.074 3.926 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.344 0.656 25 H 0.348 0.652 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.006 0.994 32 H -0.046 1.046 33 H -0.002 1.002 34 H 0.265 0.735 35 H 0.001 0.999 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 4.354 -3.178 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.016 4.016 3 H 0.088 0.912 4 N -0.387 5.387 5 C -0.085 4.085 6 H 0.086 0.914 7 C -0.146 4.146 8 C -0.146 4.146 9 C -0.067 4.067 10 N -0.269 5.269 11 C 0.083 3.917 12 C -0.563 4.563 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.577 5.577 16 Si 0.798 3.202 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.054 4.054 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.157 0.843 25 H 0.162 0.838 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.024 0.976 32 H -0.028 1.028 33 H 0.016 0.984 34 H 0.074 0.926 35 H 0.020 0.980 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.693 4.035 -2.924 16.466 hybrid contribution 0.434 0.263 0.117 0.521 sum -15.259 4.298 -2.807 16.100 Atomic orbital electron populations 1.22570 0.95622 1.02441 1.02989 1.21356 0.93353 0.97362 0.89481 0.91186 1.58764 1.68288 1.06994 1.04663 1.21120 0.92831 0.99824 0.94705 0.91367 1.21650 1.01178 0.98618 0.93196 1.21574 0.92697 1.01478 0.98817 1.21995 0.96771 0.94497 0.93416 1.61977 1.12255 1.50349 1.02304 1.19324 0.83220 0.93186 0.95996 1.21445 0.92385 1.28480 1.13986 0.91825 1.25999 0.96620 0.97965 0.99322 1.70106 1.01960 1.45945 1.39723 0.85371 0.76921 0.79033 0.78885 1.19185 1.20700 1.19076 1.21954 0.96308 0.94681 0.92487 0.91052 0.91763 0.92380 0.84282 0.83781 0.89055 0.92450 0.91631 0.89845 0.92354 0.97560 1.02837 0.98357 0.92646 0.98043 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.13 71.98 0.66 -2.24 16 2 C 0.10 2.18 2.94 44.91 0.13 2.31 16 3 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 4 N -0.86 -19.35 8.49 -168.68 -1.43 -20.78 16 5 C -0.07 -1.89 2.09 -10.74 -0.02 -1.91 16 6 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 7 C -0.11 -2.75 4.86 30.67 0.15 -2.61 16 8 C -0.11 -3.22 6.09 30.64 0.19 -3.04 16 9 C 0.06 2.53 5.30 86.33 0.46 2.99 16 10 N -0.54 -25.54 4.65 -900.93 -4.19 -29.72 16 11 C 0.21 12.09 4.72 85.56 0.40 12.49 16 12 C -0.52 -31.31 8.43 25.60 0.22 -31.09 16 13 H 0.06 3.69 7.14 -2.91 -0.02 3.67 16 14 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 15 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 16 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 C 0.07 2.95 4.58 86.33 0.40 3.34 16 21 H 0.07 1.07 6.49 -2.39 -0.02 1.06 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.34 7.24 9.00 -89.70 -0.81 6.44 16 25 H 0.35 6.19 9.07 -89.70 -0.81 5.38 16 26 H 0.09 1.77 6.57 -2.38 -0.02 1.75 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.63 6.72 -2.39 -0.02 2.61 16 31 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 32 H -0.05 -2.90 8.12 -2.38 -0.02 -2.92 16 33 H 0.00 -0.11 7.98 -2.39 -0.02 -0.13 16 34 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 35 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.06 2.58 7.51 -2.39 -0.02 2.56 16 Total: -1.00 -68.09 281.06 -0.84 -68.93 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -0.57 Total: 11.83 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.04 Total: -19.36 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -5.33 Total: -108.99 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.09 -0.84 -68.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.079 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds