Wall clock time and date at job start Mon Mar 30 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46968 * 2 1 4 4 N 1.46897 * 109.47124 * 119.99874 * 2 1 3 5 5 C 1.53006 * 109.47415 * 240.00055 * 2 1 3 6 6 H 1.08998 * 109.49782 * 59.91861 * 5 2 1 7 7 C 1.53115 * 109.50074 * 299.80165 * 5 2 1 8 8 C 1.53122 * 109.16104 * 182.40050 * 7 5 2 9 9 C 1.53035 * 109.27285 * 57.65561 * 8 7 5 10 10 N 1.46853 * 109.52739 * 300.82101 * 9 8 7 11 11 C 1.46899 * 111.00044 * 185.84344 * 10 9 8 12 12 C 1.50701 * 109.47162 * 300.35532 * 11 10 9 13 13 H 1.08007 * 119.99642 * 4.88988 * 12 11 10 14 14 C 1.37873 * 120.00234 * 184.88543 * 12 11 10 15 15 N 1.31511 * 120.00305 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99812 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.46987 * 90.00168 * 16 14 12 18 18 H 1.48506 * 109.46939 * 210.00327 * 16 14 12 19 19 H 1.48501 * 109.47200 * 329.99911 * 16 14 12 20 20 C 1.46845 * 111.19800 * 61.74146 * 10 9 8 21 21 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47538 * 299.99956 * 1 2 3 23 23 H 1.09002 * 109.47283 * 59.99877 * 1 2 3 24 24 H 1.00899 * 110.99937 * 296.04733 * 4 2 1 25 25 H 1.00901 * 111.00150 * 60.00143 * 4 2 1 26 26 H 1.08992 * 109.52478 * 302.30860 * 7 5 2 27 27 H 1.09007 * 109.52235 * 62.49906 * 7 5 2 28 28 H 1.08994 * 109.50310 * 297.72007 * 8 7 5 29 29 H 1.08993 * 109.53760 * 177.61383 * 8 7 5 30 30 H 1.09001 * 109.46445 * 180.80768 * 9 8 7 31 31 H 1.08999 * 109.46544 * 60.83841 * 9 8 7 32 32 H 1.09001 * 109.47404 * 60.35965 * 11 10 9 33 33 H 1.08998 * 109.46968 * 180.35981 * 11 10 9 34 34 H 0.97001 * 120.00370 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.46077 * 178.24436 * 20 10 9 36 36 H 1.09004 * 109.45920 * 58.27263 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0400 -0.7213 -1.2493 6 1 1.6758 -0.2086 -2.1395 7 6 1.5341 -2.1664 -1.2475 8 6 2.0978 -2.8977 -2.4690 9 6 3.6265 -2.8350 -2.4343 10 7 4.0604 -1.4320 -2.4380 11 6 5.5222 -1.3333 -2.5449 12 6 6.1601 -2.0408 -1.3772 13 1 5.5461 -2.5832 -0.6734 14 6 7.5276 -1.9957 -1.2073 15 7 8.0844 -2.6135 -0.1885 16 14 8.5896 -1.0571 -2.4242 17 1 8.7364 0.3493 -1.9709 18 1 9.9289 -1.6933 -2.5059 19 1 7.9475 -1.0813 -3.7630 20 6 3.5704 -0.7215 -1.2500 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.7502 -0.1989 2.0372 25 1 1.6961 -1.6479 1.2228 26 1 1.8657 -2.6673 -0.3380 27 1 0.4449 -2.1711 -1.2907 28 1 1.7346 -2.4200 -3.3788 29 1 1.7759 -3.9389 -2.4512 30 1 4.0308 -3.3424 -3.3102 31 1 3.9898 -3.3251 -1.5310 32 1 5.8507 -1.7977 -3.4747 33 1 5.8169 -0.2840 -2.5390 34 1 9.0466 -2.5821 -0.0692 35 1 3.9338 0.3059 -1.2657 36 1 3.9338 -1.2216 -0.3522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069725612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:30 Heat of formation + Delta-G solvation = -11.567881 kcal Electronic energy + Delta-G solvation = -15019.726315 eV Core-core repulsion = 12730.911768 eV Total energy + Delta-G solvation = -2288.814547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.89337 -35.86352 -33.00083 -31.61408 -29.77238 -28.44876 -27.12294 -24.00083 -22.78871 -21.54322 -19.63794 -18.75282 -16.69372 -16.05549 -15.19383 -14.46082 -14.14090 -14.04148 -13.51793 -13.19113 -12.96392 -12.66639 -12.56932 -12.29949 -11.74205 -11.72745 -11.12764 -10.93386 -10.78492 -10.39959 -10.29110 -10.24405 -9.93195 -9.65020 -9.59027 -9.31726 -8.51177 -8.40947 -7.02469 -6.02175 -4.00773 3.33010 3.40122 3.44827 4.46758 4.76083 4.86987 5.09297 5.17287 5.31420 5.42072 5.46799 5.53196 5.57072 5.91426 5.98372 6.02394 6.06625 6.17928 6.29050 6.35361 6.46338 6.59441 6.62142 6.82929 6.94553 7.06234 7.15749 7.22009 7.40427 7.66000 7.68011 8.20505 8.28961 8.54968 9.02436 9.61361 11.10988 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039245 B = 0.008640 C = 0.008064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.298549 B = 3239.966045 C = 3471.191461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.092 3.908 3 H 0.077 0.923 4 N -0.837 5.837 5 C -0.077 4.077 6 H 0.070 0.930 7 C -0.114 4.114 8 C -0.115 4.115 9 C 0.062 3.938 10 N -0.539 5.539 11 C 0.155 3.845 12 C -0.545 4.545 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.901 5.901 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C 0.075 3.925 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.334 0.666 25 H 0.338 0.662 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.262 0.738 35 H 0.055 0.945 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 3.272 -1.046 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.020 4.020 3 H 0.095 0.905 4 N -0.367 5.367 5 C -0.096 4.096 6 H 0.088 0.912 7 C -0.152 4.152 8 C -0.153 4.153 9 C -0.066 4.066 10 N -0.263 5.263 11 C 0.028 3.972 12 C -0.584 4.584 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.539 5.539 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.053 4.053 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.146 0.854 25 H 0.152 0.848 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.334 3.596 -1.682 13.913 hybrid contribution 0.067 -0.017 0.467 0.473 sum -13.267 3.579 -1.214 13.795 Atomic orbital electron populations 1.22685 0.98452 1.01835 1.01593 1.21433 0.91200 0.98272 0.91125 0.90456 1.58844 1.67614 1.06305 1.03887 1.21242 0.97281 0.95228 0.95844 0.91204 1.21632 0.98668 0.96082 0.98771 1.21600 0.96794 0.98974 0.97972 1.21854 0.92911 0.90837 1.01008 1.62359 1.13277 1.12086 1.38551 1.20136 0.83839 0.96438 0.96775 1.21729 0.92880 1.33214 1.10582 0.90588 1.24972 0.98059 0.95048 0.95069 1.69934 1.10994 1.43530 1.29475 0.86814 0.79850 0.80295 0.82534 1.20282 1.21410 1.18930 1.21789 0.91523 0.98435 0.93558 0.92506 0.93311 0.92309 0.85411 0.84783 0.92060 0.93029 0.92147 0.92665 0.92131 0.93888 0.95668 0.95926 0.92835 0.92605 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 9.13 37.15 0.34 -1.62 16 2 C 0.09 1.21 3.17 -67.71 -0.21 0.99 16 3 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 4 N -0.84 -11.29 8.39 -4.67 -0.04 -11.33 16 5 C -0.08 -1.19 2.23 -90.54 -0.20 -1.39 16 6 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 7 C -0.11 -1.65 4.58 -26.61 -0.12 -1.78 16 8 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 9 C 0.06 1.25 5.04 -3.83 -0.02 1.23 16 10 N -0.54 -11.69 4.86 -236.11 -1.15 -12.84 16 11 C 0.15 3.88 4.19 -4.98 -0.02 3.86 16 12 C -0.55 -15.63 8.28 -34.44 -0.29 -15.91 16 13 H 0.08 2.37 6.10 -52.48 -0.32 2.05 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 16 Si 0.88 22.00 27.37 -169.99 -4.65 17.35 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.26 -6.40 6.69 56.52 0.38 -6.03 16 20 C 0.08 1.51 4.26 -3.84 -0.02 1.50 16 21 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.33 3.77 9.07 -39.29 -0.36 3.42 16 25 H 0.34 4.36 7.11 -39.29 -0.28 4.09 16 26 H 0.06 0.93 6.55 -51.93 -0.34 0.59 16 27 H 0.05 0.64 6.58 -51.93 -0.34 0.30 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 31 H 0.04 0.97 6.57 -51.93 -0.34 0.63 16 32 H 0.03 0.64 7.54 -51.93 -0.39 0.25 16 33 H 0.02 0.57 7.24 -51.93 -0.38 0.19 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.06 1.40 6.47 -51.93 -0.34 1.06 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -30.59 271.02 -7.74 -38.33 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.96 Total: 4.79 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.80 Total: -13.12 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.41 Total: -51.44 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.65 Total: 17.35 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.59 -7.74 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.765 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds