Wall clock time and date at job start Mon Mar 30 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46968 * 2 1 4 4 N 1.46897 * 109.47124 * 119.99874 * 2 1 3 5 5 C 1.53006 * 109.47415 * 240.00055 * 2 1 3 6 6 H 1.08998 * 109.49782 * 59.91861 * 5 2 1 7 7 C 1.53115 * 109.50074 * 299.80165 * 5 2 1 8 8 C 1.53122 * 109.16104 * 182.40050 * 7 5 2 9 9 C 1.53035 * 109.27285 * 57.65561 * 8 7 5 10 10 N 1.46853 * 109.52739 * 300.82101 * 9 8 7 11 11 C 1.46899 * 111.00044 * 185.84344 * 10 9 8 12 12 C 1.50701 * 109.47162 * 300.35532 * 11 10 9 13 13 H 1.08007 * 119.99642 * 4.88988 * 12 11 10 14 14 C 1.37873 * 120.00234 * 184.88543 * 12 11 10 15 15 N 1.31511 * 120.00305 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99812 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.46987 * 90.00168 * 16 14 12 18 18 H 1.48506 * 109.46939 * 210.00327 * 16 14 12 19 19 H 1.48501 * 109.47200 * 329.99911 * 16 14 12 20 20 C 1.46845 * 111.19800 * 61.74146 * 10 9 8 21 21 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47538 * 299.99956 * 1 2 3 23 23 H 1.09002 * 109.47283 * 59.99877 * 1 2 3 24 24 H 1.00899 * 110.99937 * 296.04733 * 4 2 1 25 25 H 1.00901 * 111.00150 * 60.00143 * 4 2 1 26 26 H 1.08992 * 109.52478 * 302.30860 * 7 5 2 27 27 H 1.09007 * 109.52235 * 62.49906 * 7 5 2 28 28 H 1.08994 * 109.50310 * 297.72007 * 8 7 5 29 29 H 1.08993 * 109.53760 * 177.61383 * 8 7 5 30 30 H 1.09001 * 109.46445 * 180.80768 * 9 8 7 31 31 H 1.08999 * 109.46544 * 60.83841 * 9 8 7 32 32 H 1.09001 * 109.47404 * 60.35965 * 11 10 9 33 33 H 1.08998 * 109.46968 * 180.35981 * 11 10 9 34 34 H 0.97001 * 120.00370 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.46077 * 178.24436 * 20 10 9 36 36 H 1.09004 * 109.45920 * 58.27263 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0400 -0.7213 -1.2493 6 1 1.6758 -0.2086 -2.1395 7 6 1.5341 -2.1664 -1.2475 8 6 2.0978 -2.8977 -2.4690 9 6 3.6265 -2.8350 -2.4343 10 7 4.0604 -1.4320 -2.4380 11 6 5.5222 -1.3333 -2.5449 12 6 6.1601 -2.0408 -1.3772 13 1 5.5461 -2.5832 -0.6734 14 6 7.5276 -1.9957 -1.2073 15 7 8.0844 -2.6135 -0.1885 16 14 8.5896 -1.0571 -2.4242 17 1 8.7364 0.3493 -1.9709 18 1 9.9289 -1.6933 -2.5059 19 1 7.9475 -1.0813 -3.7630 20 6 3.5704 -0.7215 -1.2500 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.7502 -0.1989 2.0372 25 1 1.6961 -1.6479 1.2228 26 1 1.8657 -2.6673 -0.3380 27 1 0.4449 -2.1711 -1.2907 28 1 1.7346 -2.4200 -3.3788 29 1 1.7759 -3.9389 -2.4512 30 1 4.0308 -3.3424 -3.3102 31 1 3.9898 -3.3251 -1.5310 32 1 5.8507 -1.7977 -3.4747 33 1 5.8169 -0.2840 -2.5390 34 1 9.0466 -2.5821 -0.0692 35 1 3.9338 0.3059 -1.2657 36 1 3.9338 -1.2216 -0.3522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069725612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:30 Heat of formation + Delta-G solvation = -34.998452 kcal Electronic energy + Delta-G solvation = -15020.742341 eV Core-core repulsion = 12730.911768 eV Total energy + Delta-G solvation = -2289.830572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.31726 -37.28037 -34.89144 -33.41248 -31.14893 -29.63822 -28.91605 -25.63609 -24.26813 -23.15610 -21.21278 -20.17705 -18.80696 -17.22737 -16.78512 -16.14432 -15.85309 -15.32302 -15.17330 -14.62688 -14.43070 -14.04730 -13.91823 -13.82213 -13.21781 -13.14268 -12.89984 -12.57716 -12.16762 -12.09911 -11.96676 -11.83617 -11.70618 -11.41568 -11.01259 -10.89033 -10.77962 -9.44835 -8.89415 -8.30560 -6.35062 1.34260 1.35333 1.48100 2.33927 3.04176 3.34417 3.77939 3.89735 3.95619 4.17592 4.33285 4.37842 4.52227 4.64463 4.73737 4.77813 4.85996 4.94474 5.01086 5.04060 5.07849 5.16802 5.19521 5.23817 5.27476 5.39515 5.49113 5.49662 5.69271 6.14714 6.38646 6.42183 6.52908 6.71610 6.72290 7.31484 8.85997 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039245 B = 0.008640 C = 0.008064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.298549 B = 3239.966045 C = 3471.191461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 H 0.071 0.929 4 N -0.857 5.857 5 C -0.069 4.069 6 H 0.080 0.920 7 C -0.110 4.110 8 C -0.107 4.107 9 C 0.062 3.938 10 N -0.534 5.534 11 C 0.160 3.840 12 C -0.546 4.546 13 H 0.033 0.967 14 C 0.008 3.992 15 N -0.948 5.948 16 Si 0.950 3.050 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.247 1.247 20 C 0.080 3.920 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.346 0.654 25 H 0.341 0.659 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.005 0.995 32 H 0.027 0.973 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.044 0.956 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 4.299 -2.483 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.018 4.018 3 H 0.089 0.911 4 N -0.389 5.389 5 C -0.088 4.088 6 H 0.099 0.901 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.067 4.067 10 N -0.257 5.257 11 C 0.032 3.968 12 C -0.585 4.585 13 H 0.051 0.949 14 C -0.189 4.189 15 N -0.589 5.589 16 Si 0.773 3.227 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.171 1.171 20 C -0.048 4.048 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.159 0.841 25 H 0.155 0.845 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.023 0.977 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -15.129 4.627 -3.119 16.125 hybrid contribution 0.602 -0.388 0.990 1.222 sum -14.527 4.239 -2.129 15.282 Atomic orbital electron populations 1.22552 0.95612 1.02575 1.02727 1.21368 0.93307 0.97334 0.89747 0.91068 1.58810 1.68517 1.06804 1.04775 1.21200 0.93343 0.96621 0.97675 0.90143 1.21622 1.00636 0.94833 0.97628 1.21568 0.92862 1.00849 0.99223 1.21918 0.96447 0.89373 0.98925 1.62431 1.10983 1.13183 1.39075 1.20015 0.86014 0.95754 0.94989 1.21904 0.92867 1.32768 1.10912 0.94853 1.25944 0.99638 0.96154 0.97176 1.70086 1.11565 1.45452 1.31774 0.85671 0.77780 0.78845 0.80400 1.19298 1.20762 1.17062 1.21766 0.95158 0.96777 0.91142 0.91894 0.92017 0.91388 0.84090 0.84499 0.93275 0.89489 0.90671 0.90532 0.92481 0.97711 0.95512 0.95736 0.92583 0.93772 0.96089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.13 71.98 0.66 -2.43 16 2 C 0.09 2.32 3.17 44.92 0.14 2.46 16 3 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 4 N -0.86 -22.73 8.39 -168.67 -1.42 -24.14 16 5 C -0.07 -2.04 2.23 -10.74 -0.02 -2.06 16 6 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 7 C -0.11 -2.94 4.58 30.67 0.14 -2.80 16 8 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 9 C 0.06 2.50 5.04 86.32 0.43 2.94 16 10 N -0.53 -23.22 4.86 -900.93 -4.38 -27.59 16 11 C 0.16 8.07 4.19 85.56 0.36 8.42 16 12 C -0.55 -32.44 8.28 25.60 0.21 -32.23 16 13 H 0.03 2.22 6.10 -2.91 -0.02 2.20 16 14 C 0.01 0.51 5.47 84.65 0.46 0.97 16 15 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 16 Si 0.95 45.55 27.37 68.60 1.88 47.42 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.25 -11.07 6.69 99.48 0.67 -10.40 16 20 C 0.08 3.26 4.26 86.33 0.37 3.63 16 21 H 0.06 1.05 6.49 -2.39 -0.02 1.03 16 22 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.35 7.54 9.07 -89.69 -0.81 6.73 16 25 H 0.34 8.62 7.11 -89.69 -0.64 7.98 16 26 H 0.05 1.45 6.55 -2.39 -0.02 1.44 16 27 H 0.09 1.79 6.58 -2.38 -0.02 1.78 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.29 8.12 -2.39 -0.02 2.28 16 31 H 0.00 0.22 6.57 -2.39 -0.02 0.20 16 32 H 0.03 1.34 7.54 -2.39 -0.02 1.32 16 33 H 0.02 1.22 7.24 -2.39 -0.02 1.21 16 34 H 0.27 15.90 8.31 -92.71 -0.77 15.12 16 35 H 0.04 1.85 8.08 -2.39 -0.02 1.84 16 36 H 0.02 1.02 6.47 -2.39 -0.02 1.00 16 Total: -1.00 -68.37 271.02 -1.11 -69.47 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -0.43 Total: 19.55 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 2.94 Total: -24.06 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -5.49 Total: -112.39 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.42 kcal Total: -68.37 -1.11 -69.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.474 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds