Wall clock time and date at job start Mon Mar 30 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47492 * 2 1 4 4 N 1.46901 * 109.47188 * 239.99952 * 2 1 3 5 5 C 1.53002 * 109.47510 * 120.00122 * 2 1 3 6 6 H 1.08999 * 109.49823 * 304.91956 * 5 2 1 7 7 C 1.53119 * 109.50057 * 64.99388 * 5 2 1 8 8 C 1.53124 * 109.15796 * 177.63567 * 7 5 2 9 9 C 1.53037 * 109.28148 * 302.35024 * 8 7 5 10 10 N 1.46844 * 109.52152 * 59.17731 * 9 8 7 11 11 C 1.46906 * 110.99887 * 174.16043 * 10 9 8 12 12 C 1.50706 * 109.46929 * 66.04691 * 11 10 9 13 13 H 1.07998 * 119.99628 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99847 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00067 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99964 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46747 * 90.00527 * 16 14 12 18 18 H 1.48504 * 109.47496 * 210.00106 * 16 14 12 19 19 H 1.48500 * 109.47352 * 330.00459 * 16 14 12 20 20 C 1.46850 * 111.19991 * 298.25708 * 10 9 8 21 21 H 1.09003 * 109.46872 * 300.00556 * 1 2 3 22 22 H 1.09001 * 109.47277 * 59.99768 * 1 2 3 23 23 H 1.09000 * 109.47492 * 179.97438 * 1 2 3 24 24 H 1.00903 * 111.00306 * 176.04266 * 4 2 1 25 25 H 1.00897 * 111.00098 * 300.00008 * 4 2 1 26 26 H 1.09001 * 109.51997 * 57.73756 * 7 5 2 27 27 H 1.08995 * 109.57988 * 297.57553 * 7 5 2 28 28 H 1.08997 * 109.50392 * 182.40446 * 8 7 5 29 29 H 1.09000 * 109.49712 * 62.29080 * 8 7 5 30 30 H 1.08995 * 109.46089 * 299.16330 * 9 8 7 31 31 H 1.09000 * 109.45256 * 179.18504 * 9 8 7 32 32 H 1.08998 * 109.47121 * 186.04358 * 11 10 9 33 33 H 1.09000 * 109.47141 * 306.04556 * 11 10 9 34 34 H 0.96995 * 119.99723 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.46314 * 181.76064 * 20 10 9 36 36 H 1.08998 * 109.46244 * 301.72632 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2492 6 1 1.6068 -0.2612 2.1373 7 6 1.6352 -2.1967 1.1886 8 6 2.1998 -2.9234 2.4125 9 6 3.7207 -2.7563 2.4424 10 7 4.0564 -1.3279 2.5008 11 6 5.5026 -1.1335 2.6702 12 6 6.2225 -1.6209 1.4392 13 1 5.6617 -2.0333 0.6135 14 6 7.5969 -1.5392 1.3667 15 7 8.2798 -1.0364 2.3721 16 14 8.4893 -2.1440 -0.1588 17 1 8.6201 -1.0286 -1.1305 18 1 9.8399 -2.6325 0.2188 19 1 7.7174 -3.2515 -0.7774 20 6 3.5656 -0.6180 1.3127 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.0262 -0.6501 -1.2559 25 1 1.6961 -1.6479 -1.2228 26 1 2.0359 -2.6474 0.2806 27 1 0.5483 -2.2775 1.1864 28 1 1.9512 -3.9830 2.3534 29 1 1.7691 -2.4979 3.3190 30 1 4.1519 -3.1941 1.5422 31 1 4.1241 -3.2603 3.3206 32 1 5.7120 -0.0740 2.8179 33 1 5.8457 -1.6961 3.5385 34 1 9.2466 -0.9786 2.3209 35 1 3.8565 0.4309 1.3703 36 1 3.9975 -1.0658 0.4178 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069725614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:33 Heat of formation + Delta-G solvation = -17.808855 kcal Electronic energy + Delta-G solvation = -15041.976581 eV Core-core repulsion = 12752.891406 eV Total energy + Delta-G solvation = -2289.085176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.05983 -35.78195 -33.10360 -31.58622 -29.54491 -28.71586 -26.71069 -24.14049 -22.94627 -21.74468 -19.86532 -18.76832 -16.39122 -15.74867 -15.39447 -14.56827 -14.38744 -14.18659 -13.75160 -13.39120 -13.09720 -12.72747 -12.25940 -11.82131 -11.69926 -11.48890 -11.10543 -11.01402 -10.88523 -10.60377 -10.42296 -10.33113 -10.04069 -9.90547 -9.77328 -9.42058 -8.47022 -8.41265 -7.16931 -6.04831 -4.14678 3.24982 3.32128 3.34217 4.37838 4.74246 4.90505 5.07249 5.20682 5.25218 5.37661 5.45272 5.53787 5.70695 5.89218 5.92855 6.02451 6.05723 6.17317 6.24304 6.27563 6.39081 6.42152 6.52554 6.72107 6.73450 6.87869 7.28054 7.37988 7.49456 7.65549 7.87455 8.05865 8.27125 8.31363 8.95812 9.52387 10.99969 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.008960 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.003943 B = 3124.420373 C = 3460.644059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.078 0.922 4 N -0.847 5.847 5 C -0.122 4.122 6 H 0.074 0.926 7 C -0.113 4.113 8 C -0.116 4.116 9 C 0.063 3.937 10 N -0.541 5.541 11 C 0.187 3.813 12 C -0.549 4.549 13 H 0.056 0.944 14 C 0.065 3.935 15 N -0.890 5.890 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.072 3.928 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.345 0.655 25 H 0.335 0.665 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.062 0.938 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 -0.987 -2.890 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 H 0.096 0.904 4 N -0.377 5.377 5 C -0.142 4.142 6 H 0.093 0.907 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.066 4.066 10 N -0.264 5.264 11 C 0.061 3.939 12 C -0.588 4.588 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.057 4.057 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.158 0.842 25 H 0.149 0.851 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.999 -0.196 -2.817 13.303 hybrid contribution 1.677 -1.328 -0.815 2.289 sum -11.323 -1.524 -3.632 11.988 Atomic orbital electron populations 1.21806 0.95064 1.01674 1.01418 1.21417 0.94862 0.98026 0.87852 0.90413 1.59076 1.16943 1.21140 1.40588 1.22035 0.97343 0.95784 0.99087 0.90719 1.21613 0.99480 0.95640 0.98350 1.21613 0.96899 0.98822 0.98084 1.21848 0.93339 0.90780 1.00584 1.62410 1.18134 1.09080 1.36820 1.19747 0.80528 0.97404 0.96226 1.21732 0.92158 1.41872 1.03053 0.92636 1.24968 0.97658 0.95040 0.96133 1.69946 1.07198 1.45028 1.30729 0.86653 0.79205 0.79107 0.83405 1.20558 1.21108 1.20024 1.21852 0.91780 0.98819 0.93272 0.92504 0.92456 0.92845 0.84152 0.85128 0.92815 0.92515 0.92675 0.91885 0.94804 0.91921 0.95150 0.95221 0.92785 0.91939 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.24 37.15 0.34 -1.27 16 2 C 0.09 1.21 3.18 -67.71 -0.22 1.00 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 N -0.85 -11.49 9.05 -4.67 -0.04 -11.53 16 5 C -0.12 -1.83 2.17 -90.54 -0.20 -2.03 16 6 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 7 C -0.11 -1.59 4.58 -26.61 -0.12 -1.71 16 8 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 9 C 0.06 1.23 5.14 -3.84 -0.02 1.21 16 10 N -0.54 -11.61 4.86 -236.11 -1.15 -12.76 16 11 C 0.19 4.84 5.13 -4.97 -0.03 4.81 16 12 C -0.55 -15.02 7.74 -34.44 -0.27 -15.29 16 13 H 0.06 1.50 5.84 -52.49 -0.31 1.20 16 14 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.07 1.37 4.08 -3.83 -0.02 1.35 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.58 6.63 -51.93 -0.34 0.24 16 24 H 0.34 5.05 7.53 -39.29 -0.30 4.76 16 25 H 0.34 4.27 6.99 -39.29 -0.27 4.00 16 26 H 0.05 0.76 6.49 -51.93 -0.34 0.43 16 27 H 0.06 0.70 6.70 -51.93 -0.35 0.35 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.72 7.03 -51.93 -0.37 0.35 16 31 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 36 H 0.04 0.73 5.26 -51.93 -0.27 0.46 16 LS Contribution 272.87 15.07 4.11 4.11 Total: -1.00 -28.37 272.87 -8.04 -36.41 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.90 Total: 5.07 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.78 Total: -12.16 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.45 Total: -49.80 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.37 -8.04 -36.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.597 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds