Wall clock time and date at job start Mon Mar 30 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47492 * 2 1 4 4 N 1.46901 * 109.47188 * 239.99952 * 2 1 3 5 5 C 1.53002 * 109.47510 * 120.00122 * 2 1 3 6 6 H 1.08999 * 109.49823 * 304.91956 * 5 2 1 7 7 C 1.53119 * 109.50057 * 64.99388 * 5 2 1 8 8 C 1.53124 * 109.15796 * 177.63567 * 7 5 2 9 9 C 1.53037 * 109.28148 * 302.35024 * 8 7 5 10 10 N 1.46844 * 109.52152 * 59.17731 * 9 8 7 11 11 C 1.46906 * 110.99887 * 174.16043 * 10 9 8 12 12 C 1.50706 * 109.46929 * 66.04691 * 11 10 9 13 13 H 1.07998 * 119.99628 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99847 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00067 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99964 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46747 * 90.00527 * 16 14 12 18 18 H 1.48504 * 109.47496 * 210.00106 * 16 14 12 19 19 H 1.48500 * 109.47352 * 330.00459 * 16 14 12 20 20 C 1.46850 * 111.19991 * 298.25708 * 10 9 8 21 21 H 1.09003 * 109.46872 * 300.00556 * 1 2 3 22 22 H 1.09001 * 109.47277 * 59.99768 * 1 2 3 23 23 H 1.09000 * 109.47492 * 179.97438 * 1 2 3 24 24 H 1.00903 * 111.00306 * 176.04266 * 4 2 1 25 25 H 1.00897 * 111.00098 * 300.00008 * 4 2 1 26 26 H 1.09001 * 109.51997 * 57.73756 * 7 5 2 27 27 H 1.08995 * 109.57988 * 297.57553 * 7 5 2 28 28 H 1.08997 * 109.50392 * 182.40446 * 8 7 5 29 29 H 1.09000 * 109.49712 * 62.29080 * 8 7 5 30 30 H 1.08995 * 109.46089 * 299.16330 * 9 8 7 31 31 H 1.09000 * 109.45256 * 179.18504 * 9 8 7 32 32 H 1.08998 * 109.47121 * 186.04358 * 11 10 9 33 33 H 1.09000 * 109.47141 * 306.04556 * 11 10 9 34 34 H 0.96995 * 119.99723 * 180.02562 * 15 14 12 35 35 H 1.09005 * 109.46314 * 181.76064 * 20 10 9 36 36 H 1.08998 * 109.46244 * 301.72632 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2492 6 1 1.6068 -0.2612 2.1373 7 6 1.6352 -2.1967 1.1886 8 6 2.1998 -2.9234 2.4125 9 6 3.7207 -2.7563 2.4424 10 7 4.0564 -1.3279 2.5008 11 6 5.5026 -1.1335 2.6702 12 6 6.2225 -1.6209 1.4392 13 1 5.6617 -2.0333 0.6135 14 6 7.5969 -1.5392 1.3667 15 7 8.2798 -1.0364 2.3721 16 14 8.4893 -2.1440 -0.1588 17 1 8.6201 -1.0286 -1.1305 18 1 9.8399 -2.6325 0.2188 19 1 7.7174 -3.2515 -0.7774 20 6 3.5656 -0.6180 1.3127 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.0262 -0.6501 -1.2559 25 1 1.6961 -1.6479 -1.2228 26 1 2.0359 -2.6474 0.2806 27 1 0.5483 -2.2775 1.1864 28 1 1.9512 -3.9830 2.3534 29 1 1.7691 -2.4979 3.3190 30 1 4.1519 -3.1941 1.5422 31 1 4.1241 -3.2603 3.3206 32 1 5.7120 -0.0740 2.8179 33 1 5.8457 -1.6961 3.5385 34 1 9.2466 -0.9786 2.3209 35 1 3.8565 0.4309 1.3703 36 1 3.9975 -1.0658 0.4178 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069725614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:33 Heat of formation + Delta-G solvation = -38.183702 kcal Electronic energy + Delta-G solvation = -15042.860101 eV Core-core repulsion = 12752.891406 eV Total energy + Delta-G solvation = -2289.968695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46062 -37.24081 -34.96069 -33.27004 -30.88193 -29.78289 -28.63956 -25.86811 -24.33722 -23.33553 -21.37697 -20.10460 -18.47148 -17.04011 -16.85013 -16.22992 -15.92955 -15.48150 -15.13389 -14.94214 -14.62868 -14.25992 -13.83315 -13.28412 -13.08758 -12.92644 -12.73092 -12.65022 -12.27014 -12.20604 -12.09469 -11.84053 -11.78236 -11.51225 -11.27125 -10.90934 -10.64649 -9.54952 -9.02302 -8.18342 -6.39535 1.34453 1.34575 1.45078 2.33814 3.05675 3.30559 3.72581 3.84897 3.98074 4.08295 4.23738 4.43353 4.53920 4.58607 4.68671 4.71664 4.88323 4.93230 4.97758 5.06562 5.12331 5.18406 5.22021 5.27276 5.29339 5.34341 5.46589 5.51594 5.70440 6.01823 6.24141 6.28015 6.54781 6.59349 6.81974 7.32499 8.83672 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.008960 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.003943 B = 3124.420373 C = 3460.644059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.068 0.932 4 N -0.846 5.846 5 C -0.110 4.110 6 H 0.075 0.925 7 C -0.109 4.109 8 C -0.108 4.108 9 C 0.062 3.938 10 N -0.543 5.543 11 C 0.199 3.801 12 C -0.555 4.555 13 H 0.057 0.943 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.959 3.041 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.267 1.267 20 C 0.075 3.925 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.336 0.664 25 H 0.342 0.658 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.014 0.986 31 H 0.050 0.950 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.265 0.735 35 H 0.043 0.957 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 -1.828 -4.222 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.019 4.019 3 H 0.086 0.914 4 N -0.377 5.377 5 C -0.131 4.131 6 H 0.094 0.906 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.066 4.066 10 N -0.266 5.266 11 C 0.072 3.928 12 C -0.594 4.594 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.784 3.216 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.191 1.191 20 C -0.054 4.054 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.149 0.851 25 H 0.156 0.844 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -14.882 -1.044 -4.155 15.487 hybrid contribution 2.250 -1.044 -0.354 2.506 sum -12.632 -2.088 -4.510 13.575 Atomic orbital electron populations 1.21758 0.92784 1.02576 1.02175 1.21420 0.96518 0.97198 0.86723 0.91361 1.59099 1.16319 1.21703 1.40531 1.21955 0.93667 0.97276 1.00177 0.90641 1.21618 1.01309 0.94127 0.97605 1.21570 0.93073 1.00800 0.99088 1.21922 0.96710 0.88913 0.99068 1.62355 1.15040 1.10862 1.38343 1.19404 0.83599 0.94878 0.94933 1.21948 0.92588 1.41561 1.03325 0.92475 1.25858 0.98604 0.95154 0.99322 1.70074 1.07602 1.46176 1.32856 0.85541 0.77864 0.78797 0.79415 1.19782 1.20620 1.19148 1.21872 0.94953 0.97113 0.91444 0.91445 0.92093 0.91809 0.85099 0.84361 0.92765 0.89353 0.90144 0.91367 0.96721 0.93107 0.98108 0.98027 0.92561 0.93827 0.96025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.24 71.98 0.67 -1.94 16 2 C 0.09 2.31 3.18 44.91 0.14 2.46 16 3 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 4 N -0.85 -21.40 9.05 -168.68 -1.53 -22.92 16 5 C -0.11 -3.11 2.17 -10.74 -0.02 -3.14 16 6 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 7 C -0.11 -2.72 4.58 30.68 0.14 -2.58 16 8 C -0.11 -3.04 6.09 30.65 0.19 -2.85 16 9 C 0.06 2.42 5.14 86.33 0.44 2.86 16 10 N -0.54 -23.79 4.86 -900.92 -4.38 -28.17 16 11 C 0.20 10.78 5.13 85.56 0.44 11.22 16 12 C -0.56 -31.12 7.74 25.60 0.20 -30.92 16 13 H 0.06 3.13 5.84 -2.91 -0.02 3.11 16 14 C 0.01 0.57 5.46 84.65 0.46 1.03 16 15 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 16 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C 0.07 2.88 4.08 86.32 0.35 3.23 16 21 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 23 H 0.06 1.11 6.63 -2.39 -0.02 1.09 16 24 H 0.34 9.57 7.53 -89.69 -0.68 8.89 16 25 H 0.34 7.83 6.99 -89.70 -0.63 7.20 16 26 H 0.05 1.38 6.49 -2.39 -0.02 1.36 16 27 H 0.09 1.74 6.70 -2.39 -0.02 1.72 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.01 0.62 7.03 -2.39 -0.02 0.60 16 31 H 0.05 2.05 8.06 -2.39 -0.02 2.03 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.00 0.09 8.06 -2.39 -0.02 0.07 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.04 1.80 8.12 -2.38 -0.02 1.78 16 36 H 0.02 0.89 5.26 -2.39 -0.01 0.88 16 Total: -1.00 -61.92 272.87 -0.82 -62.74 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.24 Total: 18.52 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 3.01 Total: -20.63 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -5.62 Total: -106.80 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.92 -0.82 -62.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.558 kcal (2) G-P(sol) polarization free energy of solvation -61.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds