Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47181 * 2 1 4 4 N 1.46906 * 109.47605 * 119.99974 * 2 1 3 5 5 C 1.53002 * 109.47288 * 240.00169 * 2 1 3 6 6 H 1.09004 * 109.50222 * 300.07770 * 5 2 1 7 7 C 1.53122 * 109.50392 * 60.19421 * 5 2 1 8 8 C 1.53118 * 109.16234 * 177.59805 * 7 5 2 9 9 C 1.53036 * 109.27850 * 302.34695 * 8 7 5 10 10 N 1.46850 * 109.52579 * 59.17611 * 9 8 7 11 11 C 1.46895 * 110.99692 * 174.16224 * 10 9 8 12 12 C 1.50695 * 109.47353 * 59.32580 * 11 10 9 13 13 H 1.07998 * 119.99993 * 4.99917 * 12 11 10 14 14 C 1.37882 * 120.00184 * 185.00188 * 12 11 10 15 15 N 1.31511 * 119.99627 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00226 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46964 * 59.99962 * 16 14 12 18 18 H 1.48498 * 109.47110 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46991 * 300.00120 * 16 14 12 20 20 C 1.46844 * 111.19819 * 298.26195 * 10 9 8 21 21 H 1.08999 * 109.46924 * 299.99792 * 1 2 3 22 22 H 1.08995 * 109.47585 * 60.00194 * 1 2 3 23 23 H 1.09001 * 109.46697 * 180.02562 * 1 2 3 24 24 H 1.00897 * 110.99421 * 296.05110 * 4 2 1 25 25 H 1.00902 * 110.99549 * 60.00083 * 4 2 1 26 26 H 1.09002 * 109.51990 * 297.50401 * 7 5 2 27 27 H 1.08996 * 109.52432 * 57.69165 * 7 5 2 28 28 H 1.08997 * 109.50629 * 182.40089 * 8 7 5 29 29 H 1.09001 * 109.53175 * 62.30608 * 8 7 5 30 30 H 1.09004 * 109.45952 * 299.16199 * 9 8 7 31 31 H 1.08994 * 109.45656 * 179.18917 * 9 8 7 32 32 H 1.09007 * 109.46447 * 179.32286 * 11 10 9 33 33 H 1.08998 * 109.47576 * 299.31439 * 11 10 9 34 34 H 0.97006 * 119.99995 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46346 * 301.72628 * 20 10 9 36 36 H 1.09001 * 109.46377 * 181.75508 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.6758 -1.7486 -1.2505 7 6 1.5340 0.0029 -2.5000 8 6 2.0977 -0.6893 -3.7441 9 6 3.6264 -0.6906 -3.6725 10 7 4.0603 -1.3953 -2.4594 11 6 5.5221 -1.5371 -2.4275 12 6 6.1601 -0.1723 -2.4642 13 1 5.5433 0.7133 -2.4255 14 6 7.5314 -0.0543 -2.5474 15 7 8.2824 -1.1329 -2.5942 16 14 8.3222 1.6373 -2.5937 17 1 7.9725 2.3812 -1.3569 18 1 9.7973 1.4918 -2.6841 19 1 7.8254 2.3838 -3.7775 20 6 3.5704 -0.7216 -1.2501 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.7502 -0.1990 2.0372 25 1 1.6962 -1.6480 1.2227 26 1 0.4449 -0.0322 -2.5256 27 1 1.8655 1.0410 -2.4791 28 1 1.7756 -0.1527 -4.6365 29 1 1.7344 -1.7161 -3.7859 30 1 3.9896 0.3368 -3.6453 31 1 4.0305 -1.1955 -4.5499 32 1 5.8172 -2.0516 -1.5130 33 1 5.8501 -2.1150 -3.2915 34 1 9.2471 -1.0499 -2.6531 35 1 3.9338 0.3059 -1.2342 36 1 3.9338 -1.2489 -0.3681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069725615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = -40.099123 kcal Electronic energy + Delta-G solvation = -14913.548730 eV Core-core repulsion = 12623.496976 eV Total energy + Delta-G solvation = -2290.051754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21893 -37.20207 -35.04643 -33.42607 -31.13311 -29.55583 -28.40380 -25.68870 -24.30262 -23.08234 -21.22820 -20.65843 -18.46346 -17.27622 -16.62079 -15.94602 -15.79046 -15.50021 -15.01678 -14.89526 -14.32248 -13.93189 -13.86095 -13.73821 -13.15653 -12.99544 -12.86800 -12.47994 -12.41319 -12.15778 -12.04626 -11.83006 -11.72952 -11.39571 -11.05851 -10.94793 -10.61290 -9.43798 -8.98055 -8.15037 -6.35991 1.34092 1.36538 1.44719 2.36042 3.07763 3.38024 3.64942 3.97204 4.08495 4.19521 4.26369 4.38747 4.51095 4.64222 4.72514 4.81142 4.91885 5.00979 5.03658 5.09750 5.15293 5.16729 5.23046 5.29782 5.35888 5.39575 5.47529 5.61030 5.74006 6.07564 6.30533 6.39815 6.63394 6.74851 6.85917 7.35174 8.86503 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034820 B = 0.008444 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.945512 B = 3315.266949 C = 3561.930703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 H 0.064 0.936 4 N -0.855 5.855 5 C -0.067 4.067 6 H 0.071 0.929 7 C -0.109 4.109 8 C -0.108 4.108 9 C 0.062 3.938 10 N -0.545 5.545 11 C 0.200 3.800 12 C -0.556 4.556 13 H 0.052 0.948 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.958 3.042 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.269 1.269 20 C 0.088 3.912 21 H 0.062 0.938 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.347 0.653 25 H 0.344 0.656 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.013 0.987 31 H 0.049 0.951 32 H -0.002 1.002 33 H 0.004 0.996 34 H 0.266 0.734 35 H 0.002 0.998 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.360 3.192 3.109 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 H 0.082 0.918 4 N -0.386 5.386 5 C -0.087 4.087 6 H 0.089 0.911 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.066 4.066 10 N -0.268 5.268 11 C 0.074 3.926 12 C -0.595 4.595 13 H 0.071 0.929 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.783 3.217 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.040 4.040 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.161 0.839 25 H 0.158 0.842 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.016 0.984 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.020 0.980 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.644 2.787 2.798 16.135 hybrid contribution 0.573 1.274 0.230 1.415 sum -15.071 4.061 3.027 15.900 Atomic orbital electron populations 1.22557 0.95541 1.02501 1.02874 1.21351 0.93353 0.97247 0.89701 0.91774 1.58751 1.68330 1.06943 1.04574 1.21160 0.93344 0.99716 0.94442 0.91080 1.21640 1.01055 0.98491 0.93508 1.21579 0.92899 1.01503 0.98550 1.21911 0.96299 0.95801 0.92619 1.62381 1.12001 1.49771 1.02660 1.19369 0.83697 0.94699 0.94878 1.21929 0.92518 0.93988 1.51052 0.92939 1.25855 0.97984 1.00616 0.94501 1.70064 1.05500 1.30219 1.50899 0.85611 0.77427 0.79769 0.78917 1.19615 1.20318 1.19375 1.21709 0.95054 0.95266 0.92007 0.91909 0.91154 0.92135 0.83895 0.84232 0.89095 0.93087 0.90103 0.91223 0.96830 0.93252 0.98390 0.97753 0.92542 0.97969 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.13 71.98 0.66 -2.40 16 2 C 0.10 2.33 2.94 44.91 0.13 2.46 16 3 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 4 N -0.86 -20.57 8.49 -168.67 -1.43 -22.00 16 5 C -0.07 -2.01 2.09 -10.74 -0.02 -2.03 16 6 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 7 C -0.11 -2.90 4.86 30.67 0.15 -2.75 16 8 C -0.11 -3.20 6.09 30.65 0.19 -3.01 16 9 C 0.06 2.56 5.03 86.32 0.43 3.00 16 10 N -0.54 -25.17 4.86 -900.95 -4.38 -29.54 16 11 C 0.20 11.33 5.12 85.56 0.44 11.77 16 12 C -0.56 -32.63 7.72 25.60 0.20 -32.44 16 13 H 0.05 3.05 5.86 -2.91 -0.02 3.04 16 14 C 0.01 0.57 5.46 84.66 0.46 1.03 16 15 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 16 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 C 0.09 3.66 4.23 86.33 0.37 4.02 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 1.14 6.49 -2.39 -0.02 1.12 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.35 6.74 9.07 -89.70 -0.81 5.93 16 25 H 0.34 7.47 9.00 -89.69 -0.81 6.66 16 26 H 0.09 1.84 6.58 -2.39 -0.02 1.82 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.01 0.61 6.73 -2.38 -0.02 0.59 16 31 H 0.05 2.10 8.12 -2.39 -0.02 2.08 16 32 H 0.00 -0.12 8.08 -2.38 -0.02 -0.14 16 33 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 35 H 0.00 0.09 6.86 -2.39 -0.02 0.08 16 36 H 0.05 2.45 7.57 -2.39 -0.02 2.43 16 Total: -1.00 -66.23 277.97 -1.06 -67.29 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -0.56 Total: 14.09 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 3.00 Total: -20.35 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -5.52 Total: -108.59 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.23 -1.06 -67.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.195 kcal (2) G-P(sol) polarization free energy of solvation -66.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds