Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46320 * 2 1 4 4 C 1.52998 * 109.47151 * 119.99851 * 2 1 3 5 5 N 1.46891 * 109.47301 * 295.00255 * 4 2 1 6 6 C 1.52998 * 109.47241 * 240.00616 * 2 1 3 7 7 N 1.46894 * 109.47460 * 63.42496 * 6 2 1 8 8 C 1.46897 * 111.00214 * 75.86349 * 7 6 2 9 9 C 1.50700 * 109.46801 * 194.15852 * 8 7 6 10 10 H 1.07994 * 120.00374 * 3.62217 * 9 8 7 11 11 C 1.37884 * 119.99693 * 183.62777 * 9 8 7 12 12 N 1.31519 * 120.00266 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99876 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47283 * 89.99903 * 13 11 9 15 15 H 1.48512 * 109.46816 * 209.99919 * 13 11 9 16 16 H 1.48502 * 109.47175 * 329.99384 * 13 11 9 17 17 C 1.46898 * 111.00002 * 199.81563 * 7 6 2 18 18 C 1.53006 * 117.49990 * 134.95062 * 17 7 6 19 19 C 1.53009 * 117.50117 * 66.29242 * 17 7 6 20 20 H 1.09001 * 109.47643 * 65.73033 * 1 2 3 21 21 H 1.09006 * 109.46536 * 185.72824 * 1 2 3 22 22 H 1.08997 * 109.47671 * 305.72297 * 1 2 3 23 23 H 1.08996 * 109.46826 * 55.00748 * 4 2 1 24 24 H 1.09005 * 109.47013 * 175.00430 * 4 2 1 25 25 H 1.00902 * 111.00181 * 56.04973 * 5 4 2 26 26 H 1.00905 * 111.00087 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.46974 * 303.41761 * 6 2 1 28 28 H 1.09005 * 109.47094 * 183.42387 * 6 2 1 29 29 H 1.09005 * 109.47102 * 314.15062 * 8 7 6 30 30 H 1.08993 * 109.47178 * 74.15516 * 8 7 6 31 31 H 0.96996 * 120.00479 * 180.02562 * 12 11 9 32 32 H 1.09000 * 115.55227 * 280.62523 * 17 7 6 33 33 H 1.09004 * 117.49824 * 0.02562 * 18 17 7 34 34 H 1.08998 * 117.49751 * 145.01853 * 18 17 7 35 35 H 1.08997 * 117.50098 * 214.97936 * 19 17 7 36 36 H 1.08999 * 117.49375 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6513 0.0374 2.4456 6 6 2.0400 -0.7211 -1.2493 7 7 1.6191 0.0176 -2.4472 8 6 2.4372 1.2227 -2.6371 9 6 1.7747 2.1258 -3.6454 10 1 0.8114 1.8619 -4.0559 11 6 2.3986 3.2891 -4.0438 12 7 3.5716 3.6108 -3.5435 13 14 1.5777 4.4082 -5.2941 14 1 0.7271 5.3995 -4.5879 15 1 2.6180 5.1191 -6.0802 16 1 0.7357 3.5954 -6.2083 17 6 1.6632 -0.8416 -3.6380 18 6 0.4690 -0.7872 -4.5930 19 6 0.6808 -2.0129 -3.7009 20 1 -0.3634 0.4224 -0.9368 21 1 -0.3632 -1.0226 0.1026 22 1 -0.3634 0.6000 0.8343 23 1 1.6054 -1.7198 1.2951 24 1 3.1263 -0.7993 1.2056 25 1 0.6528 0.1792 2.4753 26 1 1.9765 -0.4191 3.2847 27 1 1.6275 -1.7296 -1.2805 28 1 3.1283 -0.7745 -1.2191 29 1 2.5352 1.7487 -1.6874 30 1 3.4253 0.9379 -2.9984 31 1 4.0104 4.4293 -3.8235 32 1 2.6508 -0.9891 -4.0750 33 1 -0.3491 -0.1135 -4.3380 34 1 0.6710 -0.8992 -5.6582 35 1 1.0219 -2.9308 -4.1795 36 1 0.0021 -2.1462 -2.8584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070066840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = 18.100550 kcal Electronic energy + Delta-G solvation = -14692.751779 eV Core-core repulsion = 12405.223752 eV Total energy + Delta-G solvation = -2287.528027 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.08081 -36.10499 -33.60470 -32.36074 -30.47041 -27.10673 -25.67911 -23.51307 -22.24802 -21.64320 -19.72650 -18.99864 -16.55487 -15.89220 -15.17986 -14.92117 -14.58594 -14.26984 -13.81508 -13.10988 -12.69784 -12.54849 -12.30552 -11.78355 -11.67276 -11.20688 -10.91934 -10.83974 -10.62405 -10.53218 -10.38343 -10.09157 -9.91405 -9.59376 -9.24491 -9.08674 -8.54784 -8.34009 -7.20551 -5.94471 -3.94322 3.36385 3.42213 3.45867 4.44329 4.50877 4.61915 4.94517 5.32531 5.40637 5.44102 5.56411 5.60717 5.69534 5.77874 5.96210 6.06754 6.07412 6.13131 6.21441 6.38669 6.44464 6.51560 6.62560 6.80929 6.87869 6.94395 7.24753 7.35323 7.43174 7.54299 7.91179 8.18774 8.28838 8.63075 9.13963 9.69103 11.16464 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025162 B = 0.009540 C = 0.007705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.503476 B = 2934.435750 C = 3633.292540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.085 0.915 4 C 0.068 3.932 5 N -0.850 5.850 6 C 0.064 3.936 7 N -0.508 5.508 8 C 0.195 3.805 9 C -0.497 4.497 10 H 0.065 0.935 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.895 3.105 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.274 1.274 17 C 0.039 3.961 18 C -0.153 4.153 19 C -0.193 4.193 20 H 0.076 0.924 21 H 0.036 0.964 22 H 0.042 0.958 23 H 0.020 0.980 24 H 0.067 0.933 25 H 0.339 0.661 26 H 0.334 0.666 27 H 0.057 0.943 28 H 0.024 0.976 29 H 0.032 0.968 30 H -0.008 1.008 31 H 0.259 0.741 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 -10.005 5.622 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.103 0.897 4 C -0.063 4.063 5 N -0.379 5.379 6 C -0.064 4.064 7 N -0.232 5.232 8 C 0.070 3.930 9 C -0.536 4.536 10 H 0.083 0.917 11 C -0.148 4.148 12 N -0.541 5.541 13 Si 0.723 3.277 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.199 1.199 17 C -0.070 4.070 18 C -0.191 4.191 19 C -0.231 4.231 20 H 0.095 0.905 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.038 0.962 24 H 0.085 0.915 25 H 0.153 0.847 26 H 0.146 0.854 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.010 0.990 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.551 -9.128 5.368 11.526 hybrid contribution 0.053 -0.376 -0.556 0.673 sum -4.498 -9.504 4.812 11.564 Atomic orbital electron populations 1.21687 0.95251 0.99830 1.02503 1.21117 0.96251 1.01081 0.92050 0.89666 1.21828 1.00125 0.93870 0.90512 1.58705 1.19905 1.54894 1.04443 1.21936 0.96960 0.96475 0.91079 1.61885 1.55925 1.05956 0.99433 1.19771 0.90435 0.85573 0.97221 1.21176 1.04808 1.04570 1.23030 0.91731 1.24986 0.94970 0.97984 0.96852 1.69961 1.15108 1.24866 1.44191 0.86552 0.78974 0.80790 0.81403 1.20771 1.21470 1.19918 1.22101 0.93183 0.96345 0.95411 1.22848 1.01407 0.99216 0.95583 1.23024 1.04440 0.92424 1.03168 0.90511 0.94447 0.93902 0.96159 0.91476 0.84735 0.85400 0.92409 0.95819 0.95047 0.98996 0.93096 0.90858 0.88477 0.89855 0.89988 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.77 37.16 0.33 -1.79 16 2 C -0.09 -1.44 2.64 -90.62 -0.24 -1.68 16 3 H 0.09 1.74 6.68 -51.93 -0.35 1.39 16 4 C 0.07 0.94 6.24 -3.83 -0.02 0.92 16 5 N -0.85 -10.81 9.62 -10.38 -0.10 -10.91 16 6 C 0.06 1.16 4.35 -3.83 -0.02 1.15 16 7 N -0.51 -10.78 3.81 -228.08 -0.87 -11.65 16 8 C 0.19 5.08 4.55 -4.98 -0.02 5.06 16 9 C -0.50 -13.98 8.77 -34.44 -0.30 -14.28 16 10 H 0.06 1.80 6.89 -52.49 -0.36 1.44 16 11 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 12 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 13 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.04 0.76 4.58 -67.71 -0.31 0.45 16 18 C -0.15 -2.76 9.72 -26.69 -0.26 -3.02 16 19 C -0.19 -3.05 9.64 -26.69 -0.26 -3.31 16 20 H 0.08 1.39 7.55 -51.93 -0.39 1.00 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.04 0.61 6.94 -51.93 -0.36 0.25 16 23 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.34 3.99 7.37 -39.29 -0.29 3.70 16 26 H 0.33 3.42 9.08 -39.29 -0.36 3.06 16 27 H 0.06 0.94 7.14 -51.93 -0.37 0.57 16 28 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 29 H 0.03 0.88 6.53 -51.93 -0.34 0.54 16 30 H -0.01 -0.22 8.04 -51.93 -0.42 -0.64 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 33 H 0.10 1.86 7.91 -51.93 -0.41 1.45 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.39 7.99 -51.93 -0.41 0.97 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -29.74 289.52 -8.24 -37.98 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.14 Total: 4.76 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.20 Total: -15.08 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.23 Total: -48.99 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.74 -8.24 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070066840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.079 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds