Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46320 * 2 1 4 4 C 1.52998 * 109.47151 * 119.99851 * 2 1 3 5 5 N 1.46891 * 109.47301 * 295.00255 * 4 2 1 6 6 C 1.52998 * 109.47241 * 240.00616 * 2 1 3 7 7 N 1.46894 * 109.47460 * 63.42496 * 6 2 1 8 8 C 1.46897 * 111.00214 * 75.86349 * 7 6 2 9 9 C 1.50700 * 109.46801 * 194.15852 * 8 7 6 10 10 H 1.07994 * 120.00374 * 3.62217 * 9 8 7 11 11 C 1.37884 * 119.99693 * 183.62777 * 9 8 7 12 12 N 1.31519 * 120.00266 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99876 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47283 * 89.99903 * 13 11 9 15 15 H 1.48512 * 109.46816 * 209.99919 * 13 11 9 16 16 H 1.48502 * 109.47175 * 329.99384 * 13 11 9 17 17 C 1.46898 * 111.00002 * 199.81563 * 7 6 2 18 18 C 1.53006 * 117.49990 * 134.95062 * 17 7 6 19 19 C 1.53009 * 117.50117 * 66.29242 * 17 7 6 20 20 H 1.09001 * 109.47643 * 65.73033 * 1 2 3 21 21 H 1.09006 * 109.46536 * 185.72824 * 1 2 3 22 22 H 1.08997 * 109.47671 * 305.72297 * 1 2 3 23 23 H 1.08996 * 109.46826 * 55.00748 * 4 2 1 24 24 H 1.09005 * 109.47013 * 175.00430 * 4 2 1 25 25 H 1.00902 * 111.00181 * 56.04973 * 5 4 2 26 26 H 1.00905 * 111.00087 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.46974 * 303.41761 * 6 2 1 28 28 H 1.09005 * 109.47094 * 183.42387 * 6 2 1 29 29 H 1.09005 * 109.47102 * 314.15062 * 8 7 6 30 30 H 1.08993 * 109.47178 * 74.15516 * 8 7 6 31 31 H 0.96996 * 120.00479 * 180.02562 * 12 11 9 32 32 H 1.09000 * 115.55227 * 280.62523 * 17 7 6 33 33 H 1.09004 * 117.49824 * 0.02562 * 18 17 7 34 34 H 1.08998 * 117.49751 * 145.01853 * 18 17 7 35 35 H 1.08997 * 117.50098 * 214.97936 * 19 17 7 36 36 H 1.08999 * 117.49375 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6513 0.0374 2.4456 6 6 2.0400 -0.7211 -1.2493 7 7 1.6191 0.0176 -2.4472 8 6 2.4372 1.2227 -2.6371 9 6 1.7747 2.1258 -3.6454 10 1 0.8114 1.8619 -4.0559 11 6 2.3986 3.2891 -4.0438 12 7 3.5716 3.6108 -3.5435 13 14 1.5777 4.4082 -5.2941 14 1 0.7271 5.3995 -4.5879 15 1 2.6180 5.1191 -6.0802 16 1 0.7357 3.5954 -6.2083 17 6 1.6632 -0.8416 -3.6380 18 6 0.4690 -0.7872 -4.5930 19 6 0.6808 -2.0129 -3.7009 20 1 -0.3634 0.4224 -0.9368 21 1 -0.3632 -1.0226 0.1026 22 1 -0.3634 0.6000 0.8343 23 1 1.6054 -1.7198 1.2951 24 1 3.1263 -0.7993 1.2056 25 1 0.6528 0.1792 2.4753 26 1 1.9765 -0.4191 3.2847 27 1 1.6275 -1.7296 -1.2805 28 1 3.1283 -0.7745 -1.2191 29 1 2.5352 1.7487 -1.6874 30 1 3.4253 0.9379 -2.9984 31 1 4.0104 4.4293 -3.8235 32 1 2.6508 -0.9891 -4.0750 33 1 -0.3491 -0.1135 -4.3380 34 1 0.6710 -0.8992 -5.6582 35 1 1.0219 -2.9308 -4.1795 36 1 0.0021 -2.1462 -2.8584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070066840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = -2.721575 kcal Electronic energy + Delta-G solvation = -14693.654694 eV Core-core repulsion = 12405.223752 eV Total energy + Delta-G solvation = -2288.430942 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62136 -37.39849 -35.37248 -34.18634 -31.92276 -29.02463 -27.07608 -25.06821 -24.09679 -23.01860 -21.18856 -20.50724 -18.61572 -17.15016 -16.87339 -16.44148 -16.12337 -15.89177 -15.27552 -14.61912 -14.32915 -13.90685 -13.75748 -13.54917 -13.41359 -12.88634 -12.62477 -12.51429 -12.26362 -12.06357 -11.94424 -11.65455 -11.40750 -11.31663 -11.07798 -10.73061 -10.54379 -9.54846 -8.97003 -8.15894 -6.24289 1.40226 1.41870 1.52752 2.41930 3.06499 3.12481 3.17417 3.77069 4.04692 4.16713 4.17462 4.25179 4.31086 4.50357 4.58865 4.66064 4.80139 4.84797 4.86174 4.94595 5.05348 5.15025 5.17921 5.25518 5.34067 5.43867 5.49952 5.61161 5.72641 6.12279 6.29307 6.45338 6.67451 6.70045 6.92933 7.44603 8.95232 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025162 B = 0.009540 C = 0.007705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.503476 B = 2934.435750 C = 3633.292540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 H 0.039 0.961 4 C 0.077 3.923 5 N -0.861 5.861 6 C 0.065 3.935 7 N -0.506 5.506 8 C 0.214 3.786 9 C -0.508 4.508 10 H 0.066 0.934 11 C -0.004 4.004 12 N -0.939 5.939 13 Si 0.965 3.035 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.263 1.263 17 C 0.000 4.000 18 C -0.160 4.160 19 C -0.146 4.146 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.346 0.654 26 H 0.351 0.649 27 H 0.087 0.913 28 H 0.009 0.991 29 H 0.002 0.998 30 H -0.045 1.045 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.407 -11.539 5.599 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 H 0.057 0.943 4 C -0.055 4.055 5 N -0.393 5.393 6 C -0.064 4.064 7 N -0.229 5.229 8 C 0.088 3.912 9 C -0.546 4.546 10 H 0.084 0.916 11 C -0.201 4.201 12 N -0.580 5.580 13 Si 0.790 3.210 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.187 1.187 17 C -0.109 4.109 18 C -0.198 4.198 19 C -0.184 4.184 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.160 0.840 26 H 0.164 0.836 27 H 0.105 0.895 28 H 0.027 0.973 29 H 0.020 0.980 30 H -0.027 1.027 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.310 -10.688 5.362 13.520 hybrid contribution 0.613 0.056 -0.511 0.800 sum -5.697 -10.631 4.851 13.001 Atomic orbital electron populations 1.21586 0.93895 1.01453 1.01449 1.21041 0.97315 0.98692 0.93149 0.94285 1.21657 0.99746 0.94614 0.89435 1.58620 1.20614 1.55319 1.04779 1.22050 0.96325 0.97614 0.90362 1.61804 1.54300 1.05509 1.01313 1.19347 0.89291 0.87539 0.95060 1.21472 1.04828 1.05060 1.23247 0.91604 1.25916 0.95533 0.99659 0.98943 1.70104 1.16689 1.25515 1.45728 0.85441 0.78051 0.78650 0.78841 1.20055 1.21013 1.18689 1.22171 0.93491 0.99528 0.95721 1.22886 0.99829 1.00752 0.96356 1.23095 1.01145 0.91914 1.02199 0.93421 0.91785 0.92687 0.93583 0.92224 0.83954 0.83552 0.89473 0.97309 0.97966 1.02724 0.92979 0.92588 0.89866 0.88707 0.86903 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.77 71.98 0.63 -3.14 16 2 C -0.08 -2.78 2.64 -10.80 -0.03 -2.81 16 3 H 0.04 1.67 6.68 -2.38 -0.02 1.65 16 4 C 0.08 2.02 6.24 86.30 0.54 2.56 16 5 N -0.86 -20.55 9.62 -186.74 -1.80 -22.34 16 6 C 0.06 2.34 4.35 86.30 0.38 2.72 16 7 N -0.51 -21.92 3.81 -875.52 -3.33 -25.25 16 8 C 0.21 11.77 4.55 85.56 0.39 12.16 16 9 C -0.51 -29.38 8.77 25.60 0.22 -29.16 16 10 H 0.07 3.72 6.89 -2.91 -0.02 3.70 16 11 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 12 N -0.94 -58.46 13.29 21.45 0.28 -58.17 16 13 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 16 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 17 C 0.00 0.00 4.58 44.92 0.21 0.21 16 18 C -0.16 -5.57 9.72 30.62 0.30 -5.27 16 19 C -0.15 -4.16 9.64 30.62 0.30 -3.86 16 20 H 0.05 1.70 7.55 -2.39 -0.02 1.68 16 21 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 22 H 0.05 1.48 6.94 -2.39 -0.02 1.47 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.35 7.44 7.37 -89.69 -0.66 6.78 16 26 H 0.35 6.44 9.08 -89.69 -0.81 5.62 16 27 H 0.09 2.63 7.14 -2.39 -0.02 2.61 16 28 H 0.01 0.34 8.00 -2.38 -0.02 0.32 16 29 H 0.00 0.14 6.53 -2.38 -0.02 0.12 16 30 H -0.04 -2.74 8.04 -2.39 -0.02 -2.76 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 33 H 0.08 3.12 7.91 -2.39 -0.02 3.10 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 2.70 7.99 -2.39 -0.02 2.69 16 Total: -1.00 -66.51 289.52 0.15 -66.36 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -0.42 Total: 18.13 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 3.39 Total: -26.33 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -4.85 Total: -105.77 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -66.51 0.15 -66.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070066840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.642 kcal (2) G-P(sol) polarization free energy of solvation -66.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds