Wall clock time and date at job start Mon Mar 30 2020 03:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 111.00144 * 2 1 4 4 C 1.52990 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.64872 * 303.29994 * 4 3 2 6 6 C 1.54594 * 110.72450 * 66.45314 * 4 3 2 7 7 C 1.53998 * 105.13908 * 140.31507 * 6 4 3 8 8 N 1.47899 * 107.06136 * 1.22556 * 7 6 4 9 9 C 1.46896 * 111.00494 * 214.15802 * 8 7 6 10 10 H 1.09007 * 109.47086 * 59.50132 * 9 8 7 11 11 C 1.52993 * 109.47343 * 179.50217 * 9 8 7 12 12 C 1.50694 * 109.46829 * 299.50631 * 9 8 7 13 13 H 1.07998 * 120.00333 * 354.44420 * 12 9 8 14 14 C 1.37877 * 120.00170 * 174.44940 * 12 9 8 15 15 N 1.31516 * 120.00528 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99745 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47457 * 89.99914 * 16 14 12 18 18 H 1.48497 * 109.47114 * 329.99597 * 16 14 12 19 19 H 1.48507 * 109.47093 * 210.00232 * 16 14 12 20 20 C 1.48543 * 105.81797 * 334.67087 * 8 7 6 21 21 H 1.09002 * 109.46335 * 60.00187 * 1 2 3 22 22 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46973 * 300.00306 * 1 2 3 24 24 H 1.00899 * 111.00225 * 236.04775 * 2 1 3 25 25 H 1.09003 * 109.46845 * 59.99526 * 3 2 1 26 26 H 1.09000 * 109.46983 * 300.00028 * 3 2 1 27 27 H 1.08996 * 110.31009 * 21.40329 * 6 4 3 28 28 H 1.09002 * 110.39780 * 259.27286 * 6 4 3 29 29 H 1.09004 * 109.91763 * 241.87354 * 7 6 4 30 30 H 1.08994 * 110.08218 * 120.67442 * 7 6 4 31 31 H 1.08996 * 109.47299 * 299.99950 * 11 9 8 32 32 H 1.08997 * 109.47114 * 59.99887 * 11 9 8 33 33 H 1.09000 * 109.47402 * 179.97438 * 11 9 8 34 34 H 0.96999 * 120.00151 * 179.97438 * 15 14 12 35 35 H 1.08993 * 110.66559 * 157.63718 * 20 8 7 36 36 H 1.09001 * 110.66598 * 280.77137 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8938 0.7607 0.8534 6 6 4.0569 0.7384 -1.3246 7 6 5.2924 1.5873 -1.6771 8 7 5.4610 2.5793 -0.5931 9 6 5.9846 3.8478 -1.1170 10 1 5.2945 4.2462 -1.8609 11 6 6.1334 4.8503 0.0291 12 6 7.3291 3.6110 -1.7551 13 1 7.7931 2.6378 -1.6916 14 6 7.9670 4.6367 -2.4199 15 7 9.1406 4.4302 -2.9764 16 14 7.1642 6.3198 -2.5303 17 1 7.5827 7.1451 -1.3688 18 1 5.6873 6.1654 -2.5213 19 1 7.5844 6.9871 -3.7887 20 6 4.1116 2.7646 -0.0004 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8307 -0.5261 -0.7814 25 1 1.6459 1.8948 0.8900 26 1 1.6460 1.8948 -0.8900 27 1 3.3030 0.8245 -2.1070 28 1 4.3414 -0.3049 -1.1873 29 1 5.1331 2.0984 -2.6266 30 1 6.1765 0.9530 -1.7408 31 1 5.1609 5.0216 0.4905 32 1 6.8234 4.4520 0.7729 33 1 6.5223 5.7915 -0.3596 34 1 9.5892 5.1518 -3.4444 35 1 4.1877 3.1499 1.0163 36 1 3.5071 3.4272 -0.6199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070800058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:45 Heat of formation + Delta-G solvation = 3.769677 kcal Electronic energy + Delta-G solvation = -14660.198069 eV Core-core repulsion = 12372.048609 eV Total energy + Delta-G solvation = -2288.149460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.79574 -36.09483 -33.64316 -31.61602 -29.62192 -28.14789 -26.04374 -24.81669 -23.02081 -21.48934 -19.75802 -19.25988 -16.72391 -16.37653 -15.55084 -14.70542 -14.47403 -14.15098 -13.75576 -13.26978 -13.01974 -12.57097 -12.31317 -12.29089 -11.99275 -11.82802 -11.67587 -11.04690 -10.62036 -10.50545 -10.41782 -10.32208 -10.18095 -10.03377 -9.55865 -9.04518 -8.56598 -8.56257 -7.40970 -6.06002 -4.04351 3.26379 3.35682 3.37008 4.13586 4.40236 4.77612 4.93120 5.19527 5.21816 5.24488 5.28317 5.36741 5.61114 5.65383 5.70046 5.77789 5.89208 6.09644 6.15012 6.29383 6.33425 6.50515 6.55456 6.56428 6.67817 6.80623 6.84974 6.90261 7.25000 7.27951 7.59219 7.93658 8.02745 8.66469 9.02307 9.56469 11.07092 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055509 B = 0.007067 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.297499 B = 3961.349125 C = 4161.957632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.695 5.695 3 C 0.067 3.933 4 C -0.090 4.090 5 H 0.088 0.912 6 C -0.129 4.129 7 C 0.054 3.946 8 N -0.501 5.501 9 C 0.172 3.828 10 H -0.001 1.001 11 C -0.142 4.142 12 C -0.503 4.503 13 H 0.081 0.919 14 C 0.070 3.930 15 N -0.900 5.900 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.268 1.268 19 H -0.294 1.294 20 C 0.038 3.962 21 H 0.019 0.981 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.342 0.658 25 H 0.071 0.929 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.074 0.926 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.736 -5.229 4.267 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.326 5.326 3 C -0.063 4.063 4 C -0.109 4.109 5 H 0.107 0.893 6 C -0.167 4.167 7 C -0.074 4.074 8 N -0.226 5.226 9 C 0.064 3.936 10 H 0.017 0.983 11 C -0.200 4.200 12 C -0.541 4.541 13 H 0.099 0.901 14 C -0.131 4.131 15 N -0.539 5.539 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.193 1.193 19 H -0.222 1.222 20 C -0.091 4.091 21 H 0.037 0.963 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.160 0.840 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.151 -5.380 5.220 16.014 hybrid contribution -1.050 1.678 -1.697 2.607 sum -15.201 -3.701 3.524 16.037 Atomic orbital electron populations 1.22185 0.88234 1.01598 1.00254 1.60410 1.07302 1.14721 1.50132 1.22015 0.94909 0.89038 1.00297 1.22103 0.92810 0.97123 0.98860 0.89344 1.22533 0.97803 1.00017 0.96360 1.22575 0.96514 0.94326 0.93988 1.64707 1.18921 1.10640 1.28285 1.19919 0.96215 0.85818 0.91648 0.98319 1.22099 0.99013 0.98878 0.99977 1.20952 1.01101 0.99539 1.32508 0.90095 1.24915 0.94699 0.98436 0.95079 1.69885 1.14639 1.32886 1.36441 0.86942 0.80244 0.85130 0.76792 1.20311 1.19345 1.22155 1.23194 0.91069 0.94749 1.00042 0.96265 0.91612 0.91824 0.84034 0.91057 0.95365 0.92753 0.91428 0.93914 0.90700 0.95532 0.92134 0.94010 0.92666 0.90762 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.89 16 2 N -0.69 -7.80 6.86 -121.13 -0.83 -8.63 16 3 C 0.07 0.82 5.07 -3.83 -0.02 0.80 16 4 C -0.09 -1.29 3.31 -88.76 -0.29 -1.59 16 5 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 6 C -0.13 -1.91 5.69 -25.37 -0.14 -2.06 16 7 C 0.05 1.05 5.75 -2.75 -0.02 1.04 16 8 N -0.50 -10.60 5.10 -223.88 -1.14 -11.75 16 9 C 0.17 4.16 1.32 -68.87 -0.09 4.07 16 10 H 0.00 -0.02 6.67 -51.92 -0.35 -0.36 16 11 C -0.14 -3.18 8.68 37.15 0.32 -2.85 16 12 C -0.50 -14.25 8.53 -34.44 -0.29 -14.54 16 13 H 0.08 2.51 7.71 -52.49 -0.40 2.10 16 14 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 15 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 16 Si 0.88 21.99 24.67 -169.99 -4.19 17.79 16 17 H -0.28 -6.74 6.88 56.52 0.39 -6.35 16 18 H -0.27 -6.49 6.38 56.52 0.36 -6.13 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 C 0.04 0.66 4.94 -1.89 -0.01 0.65 16 21 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.34 3.61 8.03 -39.29 -0.32 3.29 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 27 H 0.05 0.74 7.80 -51.93 -0.41 0.34 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.89 7.71 -51.93 -0.40 0.49 16 30 H 0.07 1.53 7.99 -51.93 -0.42 1.12 16 31 H 0.03 0.51 6.99 -51.93 -0.36 0.14 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.96 4.02 -51.93 -0.21 0.75 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 1.22 7.67 -51.93 -0.40 0.83 16 36 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 LS Contribution 276.26 15.07 4.16 4.16 Total: -1.00 -30.10 276.26 -7.46 -37.56 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.23 Total: -0.63 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 0.00 Total: -11.65 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.20 Total: -47.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.19 Total: 17.79 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.10 -7.46 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.327 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds