Wall clock time and date at job start Mon Mar 30 2020 03:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 111.00144 * 2 1 4 4 C 1.52990 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.64872 * 303.29994 * 4 3 2 6 6 C 1.54594 * 110.72450 * 66.45314 * 4 3 2 7 7 C 1.53998 * 105.13908 * 140.31507 * 6 4 3 8 8 N 1.47899 * 107.06136 * 1.22556 * 7 6 4 9 9 C 1.46896 * 111.00494 * 214.15802 * 8 7 6 10 10 H 1.09007 * 109.47086 * 59.50132 * 9 8 7 11 11 C 1.52993 * 109.47343 * 179.50217 * 9 8 7 12 12 C 1.50694 * 109.46829 * 299.50631 * 9 8 7 13 13 H 1.07998 * 120.00333 * 354.44420 * 12 9 8 14 14 C 1.37877 * 120.00170 * 174.44940 * 12 9 8 15 15 N 1.31516 * 120.00528 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99745 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47457 * 89.99914 * 16 14 12 18 18 H 1.48497 * 109.47114 * 329.99597 * 16 14 12 19 19 H 1.48507 * 109.47093 * 210.00232 * 16 14 12 20 20 C 1.48543 * 105.81797 * 334.67087 * 8 7 6 21 21 H 1.09002 * 109.46335 * 60.00187 * 1 2 3 22 22 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46973 * 300.00306 * 1 2 3 24 24 H 1.00899 * 111.00225 * 236.04775 * 2 1 3 25 25 H 1.09003 * 109.46845 * 59.99526 * 3 2 1 26 26 H 1.09000 * 109.46983 * 300.00028 * 3 2 1 27 27 H 1.08996 * 110.31009 * 21.40329 * 6 4 3 28 28 H 1.09002 * 110.39780 * 259.27286 * 6 4 3 29 29 H 1.09004 * 109.91763 * 241.87354 * 7 6 4 30 30 H 1.08994 * 110.08218 * 120.67442 * 7 6 4 31 31 H 1.08996 * 109.47299 * 299.99950 * 11 9 8 32 32 H 1.08997 * 109.47114 * 59.99887 * 11 9 8 33 33 H 1.09000 * 109.47402 * 179.97438 * 11 9 8 34 34 H 0.96999 * 120.00151 * 179.97438 * 15 14 12 35 35 H 1.08993 * 110.66559 * 157.63718 * 20 8 7 36 36 H 1.09001 * 110.66598 * 280.77137 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8938 0.7607 0.8534 6 6 4.0569 0.7384 -1.3246 7 6 5.2924 1.5873 -1.6771 8 7 5.4610 2.5793 -0.5931 9 6 5.9846 3.8478 -1.1170 10 1 5.2945 4.2462 -1.8609 11 6 6.1334 4.8503 0.0291 12 6 7.3291 3.6110 -1.7551 13 1 7.7931 2.6378 -1.6916 14 6 7.9670 4.6367 -2.4199 15 7 9.1406 4.4302 -2.9764 16 14 7.1642 6.3198 -2.5303 17 1 7.5827 7.1451 -1.3688 18 1 5.6873 6.1654 -2.5213 19 1 7.5844 6.9871 -3.7887 20 6 4.1116 2.7646 -0.0004 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8307 -0.5261 -0.7814 25 1 1.6459 1.8948 0.8900 26 1 1.6460 1.8948 -0.8900 27 1 3.3030 0.8245 -2.1070 28 1 4.3414 -0.3049 -1.1873 29 1 5.1331 2.0984 -2.6266 30 1 6.1765 0.9530 -1.7408 31 1 5.1609 5.0216 0.4905 32 1 6.8234 4.4520 0.7729 33 1 6.5223 5.7915 -0.3596 34 1 9.5892 5.1518 -3.4444 35 1 4.1877 3.1499 1.0163 36 1 3.5071 3.4272 -0.6199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070800058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:45 Heat of formation + Delta-G solvation = -19.779294 kcal Electronic energy + Delta-G solvation = -14661.219229 eV Core-core repulsion = 12372.048609 eV Total energy + Delta-G solvation = -2289.170620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22271 -37.25916 -35.34404 -33.52642 -30.98210 -29.71273 -27.42992 -26.47509 -24.04191 -23.09569 -21.21000 -20.83012 -18.82075 -17.41938 -17.18047 -16.36182 -15.62319 -15.44810 -14.93362 -14.91010 -14.58049 -14.23871 -14.00026 -13.53836 -13.51950 -12.97390 -12.82076 -12.69053 -12.44043 -12.17941 -12.00318 -11.67260 -11.63820 -11.50338 -11.39840 -11.08702 -10.75789 -9.39462 -9.09447 -8.30250 -6.33688 1.28477 1.32043 1.42110 2.29958 3.03647 3.15623 3.38445 3.79596 3.90773 4.06702 4.35616 4.42977 4.51303 4.56325 4.62058 4.65361 4.70442 4.72337 4.78374 4.80937 4.92880 4.95530 5.00360 5.05711 5.21047 5.24959 5.38951 5.47598 5.65367 6.00424 6.06190 6.26606 6.45638 6.65418 6.72947 7.31614 8.86650 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055509 B = 0.007067 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.297499 B = 3961.349125 C = 4161.957632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.704 5.704 3 C 0.076 3.924 4 C -0.077 4.077 5 H 0.086 0.914 6 C -0.115 4.115 7 C 0.052 3.948 8 N -0.520 5.520 9 C 0.176 3.824 10 H -0.009 1.009 11 C -0.138 4.138 12 C -0.506 4.506 13 H 0.035 0.965 14 C 0.013 3.987 15 N -0.948 5.948 16 Si 0.944 3.056 17 H -0.261 1.261 18 H -0.252 1.252 19 H -0.293 1.293 20 C 0.037 3.963 21 H 0.023 0.977 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.345 0.655 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.020 0.980 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.480 -4.698 5.263 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.335 5.335 3 C -0.054 4.054 4 C -0.097 4.097 5 H 0.104 0.896 6 C -0.154 4.154 7 C -0.077 4.077 8 N -0.244 5.244 9 C 0.067 3.933 10 H 0.009 0.991 11 C -0.195 4.195 12 C -0.545 4.545 13 H 0.053 0.947 14 C -0.185 4.185 15 N -0.589 5.589 16 Si 0.770 3.230 17 H -0.187 1.187 18 H -0.176 1.176 19 H -0.220 1.220 20 C -0.091 4.091 21 H 0.041 0.959 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.163 0.837 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.921 -4.867 6.237 18.679 hybrid contribution -0.161 1.384 -2.001 2.438 sum -17.083 -3.483 4.236 17.941 Atomic orbital electron populations 1.22240 0.86851 1.02621 1.00567 1.60402 1.08635 1.13947 1.50482 1.21874 0.92886 0.89894 1.00717 1.21995 0.94466 0.95002 0.98196 0.89567 1.22445 0.95820 0.99838 0.97252 1.22553 0.97929 0.94307 0.92889 1.64599 1.21888 1.09425 1.28525 1.19746 0.93619 0.87839 0.92080 0.99138 1.21997 1.00831 0.97675 0.99011 1.21170 1.02924 0.97655 1.32728 0.94652 1.25777 0.95158 1.02828 0.94689 1.70039 1.16543 1.34425 1.37901 0.85895 0.80055 0.79885 0.77215 1.18690 1.17576 1.22033 1.23294 0.88941 0.96786 1.00111 0.95879 0.90324 0.91534 0.83660 0.90304 0.95331 0.91033 0.89904 0.96103 0.93118 0.91989 0.92797 0.94582 0.92500 0.89659 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 127.69 1.37 1.77 16 2 N -0.70 -13.55 6.86 -537.15 -3.68 -17.23 16 3 C 0.08 1.61 5.07 86.30 0.44 2.05 16 4 C -0.08 -2.03 3.31 -9.59 -0.03 -2.06 16 5 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 6 C -0.12 -3.23 5.69 31.47 0.18 -3.05 16 7 C 0.05 2.04 5.75 86.45 0.50 2.53 16 8 N -0.52 -21.81 5.10 -862.23 -4.40 -26.21 16 9 C 0.18 8.44 1.32 44.17 0.06 8.50 16 10 H -0.01 -0.43 6.67 -2.38 -0.02 -0.45 16 11 C -0.14 -5.88 8.68 71.98 0.62 -5.26 16 12 C -0.51 -29.61 8.53 25.60 0.22 -29.39 16 13 H 0.04 2.32 7.71 -2.91 -0.02 2.30 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 16 Si 0.94 45.12 24.67 68.60 1.69 46.82 16 17 H -0.26 -11.82 6.88 99.48 0.68 -11.13 16 18 H -0.25 -11.27 6.38 99.48 0.64 -10.64 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 20 C 0.04 1.19 4.94 86.65 0.43 1.61 16 21 H 0.02 0.33 8.14 -2.39 -0.02 0.32 16 22 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.35 6.21 8.03 -89.69 -0.72 5.49 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 27 H 0.07 1.78 7.80 -2.39 -0.02 1.76 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.02 0.89 7.71 -2.38 -0.02 0.87 16 30 H 0.05 2.18 7.99 -2.39 -0.02 2.17 16 31 H 0.06 2.19 6.99 -2.39 -0.02 2.17 16 32 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.56 4.02 -2.39 -0.01 1.55 16 34 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.09 2.55 7.67 -2.39 -0.02 2.53 16 36 H 0.04 1.15 7.88 -2.39 -0.02 1.13 16 Total: -1.00 -66.22 276.26 -1.63 -67.84 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.22 Total: 10.68 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.24 Total: -22.08 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -7.78 Total: -103.26 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.69 Total: 46.82 kcal Total: -66.22 -1.63 -67.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.066 kcal (2) G-P(sol) polarization free energy of solvation -66.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds