Wall clock time and date at job start Mon Mar 30 2020 02:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08997 * 109.46964 * 2 1 4 4 N 1.46905 * 109.46614 * 239.99875 * 2 1 3 5 5 C 1.52997 * 109.47046 * 120.00143 * 2 1 3 6 6 C 1.53114 * 109.52307 * 184.99832 * 5 2 1 7 7 C 1.53037 * 109.31211 * 182.35784 * 6 5 2 8 8 N 1.46929 * 109.47910 * 59.15772 * 7 6 5 9 9 C 1.46900 * 110.98461 * 174.18240 * 8 7 6 10 10 C 1.50705 * 109.47243 * 294.23045 * 9 8 7 11 11 H 1.08002 * 119.99500 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00116 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00191 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99944 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46764 * 90.00197 * 14 12 10 16 16 H 1.48495 * 109.47278 * 210.00088 * 14 12 10 17 17 H 1.48496 * 109.47270 * 330.00143 * 14 12 10 18 18 C 1.46850 * 111.22205 * 298.28247 * 8 7 6 19 19 C 1.53037 * 109.52028 * 61.74456 * 18 8 7 20 20 H 1.09003 * 109.46875 * 300.00249 * 1 2 3 21 21 H 1.08997 * 109.46680 * 60.00085 * 1 2 3 22 22 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 23 23 H 1.00899 * 111.00301 * 296.04308 * 4 2 1 24 24 H 1.00903 * 111.00003 * 60.00692 * 4 2 1 25 25 H 1.09006 * 109.52082 * 305.12709 * 5 2 1 26 26 H 1.09002 * 109.50377 * 302.31909 * 6 5 2 27 27 H 1.09003 * 109.50316 * 62.39904 * 6 5 2 28 28 H 1.08994 * 109.46612 * 179.21753 * 7 6 5 29 29 H 1.09007 * 109.46083 * 299.18512 * 7 6 5 30 30 H 1.09001 * 109.47343 * 54.22849 * 9 8 7 31 31 H 1.08999 * 109.47204 * 174.23004 * 9 8 7 32 32 H 0.96998 * 120.00313 * 179.97438 * 13 12 10 33 33 H 1.08997 * 109.46198 * 301.72747 * 18 8 7 34 34 H 1.08999 * 109.45191 * 181.75464 * 18 8 7 35 35 H 1.08997 * 109.50150 * 180.88044 * 19 18 8 36 36 H 1.08997 * 109.53578 * 60.77667 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1995 5 6 2.0401 -0.7213 1.2492 6 6 3.5661 -0.6140 1.3149 7 6 4.0757 -1.3866 2.5336 8 7 3.6695 -2.7945 2.4263 9 6 4.2575 -3.5957 3.5081 10 6 5.7553 -3.6352 3.3469 11 1 6.2235 -3.1173 2.5229 12 6 6.5278 -4.3333 4.2507 13 7 5.9575 -4.9652 5.2532 14 14 8.3844 -4.3829 4.0504 15 1 8.9922 -3.2457 4.7869 16 1 8.9071 -5.6615 4.5953 17 1 8.7298 -4.2808 2.6097 18 6 2.2069 -2.9259 2.4094 19 6 1.6423 -2.1986 1.1870 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7503 -1.6649 -1.1910 24 1 1.6962 -0.2350 -2.0386 25 1 1.6042 -0.2638 2.1374 26 1 3.9999 -1.0366 0.4086 27 1 3.8538 0.4338 1.4018 28 1 5.1631 -1.3235 2.5750 29 1 3.6523 -0.9547 3.4405 30 1 4.0073 -3.1472 4.4696 31 1 3.8606 -4.6100 3.4660 32 1 6.5009 -5.4567 5.8888 33 1 1.7923 -2.4869 3.3168 34 1 1.9378 -3.9810 2.3607 35 1 0.5556 -2.2831 1.1831 36 1 2.0453 -2.6459 0.2784 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082475078.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:54 Heat of formation + Delta-G solvation = -36.839771 kcal Electronic energy + Delta-G solvation = -14723.995528 eV Core-core repulsion = 12434.085110 eV Total energy + Delta-G solvation = -2289.910418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26572 -37.36516 -34.90036 -32.72814 -31.71159 -29.68555 -28.59188 -25.86323 -23.93748 -23.38420 -21.46055 -20.07373 -18.45460 -17.21836 -16.88739 -16.18148 -15.80947 -15.22366 -15.09802 -14.85531 -14.36887 -14.04428 -13.78741 -13.65604 -13.31789 -13.08375 -12.83600 -12.60283 -12.45415 -12.28540 -11.95301 -11.83890 -11.53793 -11.39954 -10.97139 -10.88021 -10.61810 -9.41929 -8.97155 -8.21043 -6.31530 1.40374 1.42261 1.54359 2.40382 3.10854 3.34620 3.77919 3.81873 3.92635 4.08772 4.37929 4.41637 4.43402 4.58878 4.59685 4.71305 4.82694 4.87433 4.97041 5.03847 5.05955 5.17427 5.21048 5.26460 5.30477 5.36884 5.47167 5.63112 5.69518 6.06259 6.39025 6.42039 6.69734 6.75408 6.85402 7.38434 8.90321 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058450 B = 0.006714 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.926525 B = 4169.442864 C = 4412.016862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.080 0.920 4 N -0.851 5.851 5 C -0.077 4.077 6 C -0.092 4.092 7 C 0.064 3.936 8 N -0.540 5.540 9 C 0.206 3.794 10 C -0.523 4.523 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.972 3.028 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.051 3.949 19 C -0.099 4.099 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.342 0.658 24 H 0.346 0.654 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.006 0.994 30 H -0.044 1.044 31 H 0.002 0.998 32 H 0.265 0.735 33 H 0.013 0.987 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 9.789 -10.626 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.098 0.902 4 N -0.383 5.383 5 C -0.096 4.096 6 C -0.130 4.130 7 C -0.064 4.064 8 N -0.265 5.265 9 C 0.080 3.920 10 C -0.562 4.562 11 H 0.080 0.920 12 C -0.197 4.197 13 N -0.577 5.577 14 Si 0.796 3.204 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.077 4.077 19 C -0.136 4.136 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.157 0.843 24 H 0.160 0.840 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.024 0.976 30 H -0.026 1.026 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.221 9.685 -10.665 17.104 hybrid contribution -0.392 -0.318 1.192 1.294 sum -9.614 9.366 -9.473 16.428 Atomic orbital electron populations 1.22620 0.96673 1.02331 1.02575 1.21312 0.92577 0.97617 0.89622 0.90232 1.58880 1.67942 1.07210 1.04249 1.21214 0.95249 0.95477 0.97681 1.21476 0.95683 0.98731 0.97097 1.21994 0.99890 0.87827 0.96677 1.61989 1.08204 1.09405 1.46916 1.19374 0.94666 0.91488 0.86503 1.21467 0.92206 1.31646 1.10831 0.92015 1.25950 1.04309 0.94824 0.94666 1.70093 1.37617 1.34365 1.15627 0.85350 0.78668 0.77662 0.78753 1.19732 1.20539 1.18888 1.22126 0.88068 0.99974 0.97552 1.21590 0.99957 0.94868 0.97216 0.92088 0.91688 0.92360 0.84293 0.83992 0.91735 0.91182 0.91259 0.92578 0.97558 1.02596 0.97968 0.92652 0.96903 0.92250 0.90020 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.86 9.24 71.99 0.67 -2.19 16 2 C 0.10 1.97 3.14 44.92 0.14 2.11 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 N -0.85 -16.57 8.60 -168.66 -1.45 -18.02 16 5 C -0.08 -2.01 2.08 -10.71 -0.02 -2.03 16 6 C -0.09 -2.92 5.29 30.64 0.16 -2.76 16 7 C 0.06 2.67 5.30 86.31 0.46 3.13 16 8 N -0.54 -24.84 4.65 -900.69 -4.19 -29.02 16 9 C 0.21 11.65 4.72 85.56 0.40 12.05 16 10 C -0.52 -31.01 8.43 25.60 0.22 -30.79 16 11 H 0.06 3.60 7.12 -2.91 -0.02 3.58 16 12 C 0.00 0.01 5.46 84.65 0.46 0.47 16 13 N -0.94 -58.05 13.29 21.45 0.28 -57.76 16 14 Si 0.97 45.52 29.54 68.60 2.03 47.54 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 18 C 0.05 1.92 5.46 86.33 0.47 2.40 16 19 C -0.10 -2.73 4.69 30.65 0.14 -2.58 16 20 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.06 0.92 6.64 -2.39 -0.02 0.90 16 23 H 0.34 6.69 6.82 -89.69 -0.61 6.08 16 24 H 0.35 5.19 9.04 -89.69 -0.81 4.38 16 25 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.07 2.40 7.70 -2.39 -0.02 2.38 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 2.57 6.70 -2.39 -0.02 2.55 16 29 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 30 H -0.04 -2.68 8.12 -2.39 -0.02 -2.70 16 31 H 0.00 0.13 7.99 -2.39 -0.02 0.11 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 2.26 8.01 -2.39 -0.02 2.24 16 35 H 0.08 1.83 6.71 -2.39 -0.02 1.82 16 36 H 0.07 2.05 6.39 -2.39 -0.02 2.03 16 Total: -1.00 -66.15 277.73 -0.59 -66.74 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -0.37 Total: 10.72 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 3.10 Total: -20.19 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -5.35 Total: -104.81 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -66.15 -0.59 -66.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082475078.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.900 kcal (2) G-P(sol) polarization free energy of solvation -66.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds