Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47053 * 2 1 4 4 N 1.46894 * 109.47556 * 120.00154 * 2 1 3 5 5 C 1.52998 * 109.47094 * 240.00738 * 2 1 3 6 6 C 1.53100 * 109.52546 * 299.67252 * 5 2 1 7 7 C 1.53032 * 109.29412 * 182.43882 * 6 5 2 8 8 N 1.46846 * 109.51724 * 59.18566 * 7 6 5 9 9 C 1.46895 * 111.00096 * 174.16824 * 8 7 6 10 10 C 1.50699 * 109.47231 * 64.56792 * 9 8 7 11 11 H 1.08005 * 120.00249 * 4.88230 * 10 9 8 12 12 C 1.37883 * 120.00325 * 184.87876 * 10 9 8 13 13 N 1.31505 * 120.00226 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99533 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47098 * 89.99912 * 14 12 10 16 16 H 1.48503 * 109.47038 * 209.99370 * 14 12 10 17 17 H 1.48500 * 109.47298 * 329.99841 * 14 12 10 18 18 C 1.46850 * 111.19516 * 298.26405 * 8 7 6 19 19 C 1.53043 * 109.52195 * 61.74056 * 18 8 7 20 20 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47228 * 299.99561 * 1 2 3 22 22 H 1.08995 * 109.47457 * 59.99826 * 1 2 3 23 23 H 1.00903 * 111.00165 * 59.99714 * 4 2 1 24 24 H 1.00900 * 111.00691 * 183.95724 * 4 2 1 25 25 H 1.08992 * 109.58256 * 59.83547 * 5 2 1 26 26 H 1.09005 * 109.48842 * 62.49166 * 6 5 2 27 27 H 1.09005 * 109.50566 * 302.39254 * 6 5 2 28 28 H 1.08997 * 109.45890 * 299.17487 * 7 6 5 29 29 H 1.09000 * 109.46544 * 179.19444 * 7 6 5 30 30 H 1.09006 * 109.47151 * 184.56647 * 9 8 7 31 31 H 1.08995 * 109.47249 * 304.56548 * 9 8 7 32 32 H 0.97008 * 120.00320 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.46357 * 181.75565 * 18 8 7 34 34 H 1.09005 * 109.46647 * 301.73556 * 18 8 7 35 35 H 1.09001 * 109.50308 * 60.76293 * 19 18 8 36 36 H 1.09005 * 109.49970 * 180.87712 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0399 -0.7211 -1.2493 6 6 1.5370 -2.1671 -1.2466 7 6 2.0997 -2.9004 -2.4663 8 7 3.5672 -2.8738 -2.4207 9 6 4.1423 -3.6861 -3.5012 10 6 3.7827 -3.0783 -4.8325 11 1 3.2546 -2.1369 -4.8714 12 6 4.1280 -3.7238 -6.0009 13 7 3.8138 -3.1936 -7.1626 14 14 5.0408 -5.3521 -5.9336 15 1 4.0612 -6.4677 -5.8988 16 1 5.9019 -5.4870 -7.1360 17 1 5.8850 -5.3964 -4.7127 18 6 4.0751 -1.4968 -2.4702 19 6 3.5711 -0.7218 -1.2505 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.6962 -1.6479 1.2227 24 1 3.0262 -0.6500 1.2558 25 1 1.6752 -0.2103 -2.1404 26 1 0.4478 -2.1734 -1.2887 27 1 1.8694 -2.6664 -0.3364 28 1 1.7556 -2.4088 -3.3762 29 1 1.7549 -3.9344 -2.4594 30 1 5.2269 -3.7152 -3.3961 31 1 3.7445 -4.6994 -3.4451 32 1 4.0564 -3.6479 -7.9847 33 1 5.1650 -1.5113 -2.4663 34 1 3.7216 -1.0117 -3.3801 35 1 3.9356 -1.1983 -0.3405 36 1 3.9355 0.3046 -1.2956 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082475079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = -36.033491 kcal Electronic energy + Delta-G solvation = -14912.190094 eV Core-core repulsion = 12622.314639 eV Total energy + Delta-G solvation = -2289.875455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46694 -37.50545 -34.76894 -32.72003 -31.80472 -29.91215 -28.90203 -25.71298 -24.08480 -23.24692 -21.46669 -20.15235 -18.84490 -17.04436 -16.88964 -16.12036 -15.82055 -15.65846 -15.29746 -14.85830 -14.54634 -14.48447 -14.03253 -13.50106 -13.08919 -12.86242 -12.79611 -12.60577 -12.28852 -12.09538 -11.98638 -11.95453 -11.75391 -11.58193 -11.19236 -11.01125 -10.82895 -9.48886 -9.02862 -8.35862 -6.41595 1.32555 1.34015 1.46529 2.30369 2.99270 3.29174 3.71386 3.79504 3.89241 4.04354 4.32745 4.41556 4.47851 4.57463 4.59923 4.70988 4.83911 4.89385 4.94275 5.00901 5.02105 5.09391 5.15842 5.17772 5.20500 5.31958 5.39296 5.44545 5.54862 6.06425 6.31900 6.34654 6.42395 6.65371 6.67929 7.25814 8.80548 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057828 B = 0.007264 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.077495 B = 3853.702607 C = 3930.409456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.102 3.898 3 H 0.079 0.921 4 N -0.843 5.843 5 C -0.119 4.119 6 C -0.099 4.099 7 C 0.061 3.939 8 N -0.526 5.526 9 C 0.159 3.841 10 C -0.552 4.552 11 H 0.031 0.969 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.952 3.048 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.246 1.246 18 C 0.062 3.938 19 C -0.101 4.101 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.342 0.658 24 H 0.344 0.656 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.003 0.997 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.029 0.971 32 H 0.267 0.733 33 H 0.060 0.940 34 H 0.004 0.996 35 H 0.079 0.921 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 2.901 15.008 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.010 4.010 3 H 0.097 0.903 4 N -0.374 5.374 5 C -0.140 4.140 6 C -0.137 4.137 7 C -0.067 4.067 8 N -0.249 5.249 9 C 0.031 3.969 10 C -0.591 4.591 11 H 0.050 0.950 12 C -0.189 4.189 13 N -0.588 5.588 14 Si 0.775 3.225 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.170 1.170 18 C -0.066 4.066 19 C -0.139 4.139 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.156 0.844 24 H 0.158 0.842 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.021 0.979 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.097 0.903 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.448 3.225 15.711 16.405 hybrid contribution 0.611 -0.826 -2.602 2.798 sum -2.837 2.398 13.109 13.625 Atomic orbital electron populations 1.21823 0.94164 1.02313 1.01886 1.21325 0.95713 0.97417 0.86577 0.90288 1.59093 1.16726 1.21782 1.39762 1.21955 0.95599 0.96557 0.99876 1.21620 0.99974 0.94725 0.97396 1.21929 0.88267 0.99793 0.96761 1.62442 1.06829 1.11176 1.44461 1.20045 0.95421 0.93773 0.87663 1.21917 1.37471 1.07550 0.92182 0.95034 1.25970 0.96230 1.01943 0.94736 1.70080 1.48741 1.41551 0.98443 0.85637 0.79248 0.79017 0.78600 1.19078 1.20869 1.16976 1.21905 0.98974 0.89064 0.96677 1.21609 0.95237 0.99470 0.97557 0.92309 0.91682 0.92422 0.84362 0.84205 0.93147 0.90517 0.90412 0.97871 0.91989 0.95354 0.95263 0.92456 0.92157 0.97809 0.90299 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.14 71.98 0.66 -2.13 16 2 C 0.10 2.13 3.24 44.91 0.15 2.27 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 N -0.84 -16.21 9.06 -168.70 -1.53 -17.74 16 5 C -0.12 -3.16 2.14 -10.72 -0.02 -3.18 16 6 C -0.10 -2.76 4.68 30.64 0.14 -2.62 16 7 C 0.06 2.34 5.12 86.32 0.44 2.79 16 8 N -0.53 -21.67 4.86 -900.93 -4.38 -26.05 16 9 C 0.16 7.66 4.19 85.56 0.36 8.02 16 10 C -0.55 -31.89 8.28 25.60 0.21 -31.68 16 11 H 0.03 2.04 6.10 -2.91 -0.02 2.03 16 12 C 0.01 0.54 5.47 84.66 0.46 1.00 16 13 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 14 Si 0.95 44.22 27.37 68.60 1.88 46.10 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.25 -10.65 6.69 99.48 0.67 -9.99 16 18 C 0.06 2.42 5.04 86.33 0.43 2.85 16 19 C -0.10 -2.83 5.10 30.65 0.16 -2.67 16 20 H 0.06 1.12 6.50 -2.39 -0.02 1.10 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.34 6.36 7.11 -89.69 -0.64 5.72 16 24 H 0.34 6.25 7.35 -89.69 -0.66 5.59 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.91 6.58 -2.38 -0.02 1.90 16 27 H 0.08 1.94 6.55 -2.38 -0.02 1.92 16 28 H 0.00 0.13 7.04 -2.39 -0.02 0.12 16 29 H 0.06 2.35 8.08 -2.39 -0.02 2.33 16 30 H 0.03 1.36 7.54 -2.38 -0.02 1.35 16 31 H 0.03 1.38 7.24 -2.39 -0.02 1.37 16 32 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 33 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 34 H 0.00 0.17 6.57 -2.38 -0.02 0.15 16 35 H 0.08 1.97 6.65 -2.39 -0.02 1.95 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -64.82 268.97 -1.01 -65.83 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.27 Total: 16.59 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 2.99 Total: -25.35 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -5.60 Total: -103.17 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Total: -64.82 -1.01 -65.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082475079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.793 kcal (2) G-P(sol) polarization free energy of solvation -64.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds