Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46792 * 2 1 4 4 C 1.50694 * 109.47033 * 120.00321 * 2 1 3 5 5 H 1.08006 * 119.99795 * 120.00471 * 4 2 1 6 6 C 1.37874 * 120.00080 * 299.99740 * 4 2 1 7 7 N 1.31523 * 119.99947 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00040 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47190 * 89.99677 * 8 6 4 10 10 H 1.48496 * 109.47113 * 209.99534 * 8 6 4 11 11 H 1.48497 * 109.47323 * 329.99688 * 8 6 4 12 12 N 1.46907 * 109.46699 * 240.00419 * 2 1 3 13 13 C 1.46998 * 111.02285 * 183.78591 * 12 2 1 14 14 C 1.53062 * 109.37366 * 176.82000 * 13 12 2 15 15 N 1.46954 * 109.35871 * 58.40489 * 14 13 12 16 16 C 1.46903 * 110.99536 * 176.81353 * 15 14 13 17 17 C 1.46961 * 110.88027 * 300.67510 * 15 14 13 18 18 H 1.08997 * 109.49026 * 299.35826 * 17 15 14 19 19 C 1.53002 * 109.48681 * 179.29235 * 17 15 14 20 20 C 1.46956 * 111.00063 * 60.00090 * 12 2 1 21 21 H 1.08995 * 109.47153 * 299.99246 * 1 2 3 22 22 H 1.08997 * 109.47270 * 60.00179 * 1 2 3 23 23 H 1.09007 * 109.46827 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99836 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.48570 * 56.85644 * 13 12 2 26 26 H 1.08997 * 109.50642 * 296.80327 * 13 12 2 27 27 H 1.09002 * 109.48764 * 298.44108 * 14 13 12 28 28 H 1.08994 * 109.48697 * 178.37224 * 14 13 12 29 29 H 1.09002 * 109.47008 * 183.80001 * 16 15 14 30 30 H 1.08995 * 109.46900 * 303.79801 * 16 15 14 31 31 H 1.08994 * 109.47172 * 63.80030 * 16 15 14 32 32 H 1.09008 * 109.47270 * 300.11114 * 19 17 15 33 33 H 1.09000 * 109.47521 * 60.11011 * 19 17 15 34 34 H 1.09004 * 109.47320 * 180.11185 * 19 17 15 35 35 H 1.09002 * 109.49189 * 63.21630 * 20 12 2 36 36 H 1.09002 * 109.48707 * 303.17388 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 2.1382 -0.8593 3.5565 8 14 0.6249 1.2789 2.6541 9 1 -0.8027 0.8726 2.6998 10 1 0.9760 1.9948 3.9069 11 1 0.8471 2.1765 1.4922 12 7 2.0197 -0.6925 -1.1996 13 6 3.4863 -0.7914 -1.1897 14 6 3.9498 -1.5864 -2.4128 15 7 3.4781 -0.9197 -3.6345 16 6 3.9673 -1.6120 -4.8343 17 6 2.0119 -0.8209 -3.6446 18 1 1.5798 -1.8211 -3.6133 19 6 1.5571 -0.1075 -4.9194 20 6 1.5484 -0.0260 -2.4216 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9035 -0.5281 4.4375 25 1 3.8103 -1.2997 -0.2815 26 1 3.9187 0.2087 -1.2208 27 1 3.5396 -2.5953 -2.3675 28 1 5.0386 -1.6362 -2.4228 29 1 3.6604 -1.0602 -5.7227 30 1 5.0552 -1.6713 -4.8013 31 1 3.5494 -2.6180 -4.8690 32 1 1.9903 0.8923 -4.9506 33 1 1.8873 -0.6738 -5.7902 34 1 0.4697 -0.0327 -4.9257 35 1 1.9585 0.9829 -2.4669 36 1 0.4596 0.0242 -2.4117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082478106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = 20.295906 kcal Electronic energy + Delta-G solvation = -15133.103907 eV Core-core repulsion = 12845.671078 eV Total energy + Delta-G solvation = -2287.432829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.07924 -35.83542 -32.55162 -32.13835 -30.43931 -27.36371 -26.62551 -24.89604 -23.17892 -21.73007 -19.79555 -19.10996 -16.77784 -15.68151 -15.32906 -14.67386 -14.48498 -14.17525 -13.67179 -13.38452 -12.87225 -12.67776 -12.26684 -11.93086 -11.87130 -11.66366 -11.61006 -11.32017 -10.75609 -10.67065 -10.55723 -10.37030 -10.09870 -9.87528 -9.44913 -8.96830 -8.55422 -8.08776 -7.31810 -6.06465 -4.05000 3.27239 3.37511 3.39544 4.15813 4.40510 4.73114 5.13307 5.25124 5.27483 5.38553 5.53589 5.59214 5.76549 5.81009 5.86749 5.93431 5.98440 6.04854 6.09915 6.21922 6.35396 6.40207 6.52152 6.54441 6.66362 6.78213 6.89199 7.26785 7.31538 7.37125 7.61691 7.98125 8.11494 8.66824 8.99149 9.55733 11.06215 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049310 B = 0.008946 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.700864 B = 3129.239150 C = 3537.402439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.182 3.818 3 H -0.002 1.002 4 C -0.506 4.506 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.526 5.526 13 C 0.066 3.934 14 C 0.057 3.943 15 N -0.541 5.541 16 C 0.023 3.977 17 C 0.083 3.917 18 H 0.046 0.954 19 C -0.145 4.145 20 C 0.057 3.943 21 H 0.041 0.959 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.264 0.736 25 H 0.096 0.904 26 H 0.029 0.971 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 0.927 -14.416 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.075 3.925 3 H 0.015 0.985 4 C -0.544 4.544 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.251 5.251 13 C -0.062 4.062 14 C -0.071 4.071 15 N -0.267 5.267 16 C -0.125 4.125 17 C -0.025 4.025 18 H 0.064 0.936 19 C -0.203 4.203 20 C -0.072 4.072 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.288 0.925 -14.197 14.230 hybrid contribution -0.642 0.777 0.250 1.038 sum -0.354 1.702 -13.946 14.054 Atomic orbital electron populations 1.22195 0.98587 1.01268 0.98206 1.19662 0.91405 0.92649 0.88776 0.98466 1.20983 1.31922 1.13531 0.87946 0.89951 1.24924 0.95828 0.96615 0.95810 1.69885 1.45741 1.40311 0.97863 0.86870 0.80730 0.83838 0.76821 1.20575 1.22493 1.19431 1.62102 1.09418 1.52055 1.01527 1.22061 0.88354 0.98663 0.97157 1.22256 0.99109 0.96292 0.89401 1.62208 1.10255 1.51907 1.02320 1.22380 1.00245 0.96289 0.93599 1.21679 0.87184 0.98513 0.95153 0.93625 1.21869 1.00791 1.01050 0.96548 1.22202 0.99810 0.95385 0.89828 0.94060 0.95226 0.92107 0.92637 0.88613 0.95250 0.94356 0.91015 0.91461 0.91837 0.96041 0.92043 0.92708 0.92275 0.95159 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.44 37.16 0.31 -2.93 16 2 C 0.18 4.42 1.65 -68.86 -0.11 4.31 16 3 H 0.00 -0.05 7.20 -51.93 -0.37 -0.43 16 4 C -0.51 -14.19 8.47 -34.44 -0.29 -14.48 16 5 H 0.08 2.49 6.66 -52.48 -0.35 2.14 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 8 Si 0.89 22.16 24.37 -169.99 -4.14 18.02 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.53 -11.25 4.57 -227.83 -1.04 -12.29 16 13 C 0.07 1.33 5.33 -3.74 -0.02 1.31 16 14 C 0.06 0.95 5.62 -3.76 -0.02 0.93 16 15 N -0.54 -8.32 4.78 -234.72 -1.12 -9.44 16 16 C 0.02 0.28 9.13 60.07 0.55 0.83 16 17 C 0.08 1.28 2.56 -67.65 -0.17 1.11 16 18 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.14 -1.76 8.86 37.16 0.33 -1.43 16 20 C 0.06 1.02 4.60 -3.77 -0.02 1.01 16 21 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 22 H 0.03 0.57 6.34 -51.93 -0.33 0.24 16 23 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.10 2.12 6.14 -51.93 -0.32 1.80 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 29 H 0.07 0.72 6.25 -51.93 -0.32 0.40 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.05 0.58 6.36 -51.93 -0.33 0.25 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.30 6.14 -51.93 -0.32 0.98 16 LS Contribution 266.38 15.07 4.01 4.01 Total: -1.00 -29.87 266.38 -6.99 -36.85 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.92 Total: -3.04 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 0.46 Total: -7.44 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -1.39 Total: -48.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.87 -6.99 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.149 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds