Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46792 * 2 1 4 4 C 1.50694 * 109.47033 * 120.00321 * 2 1 3 5 5 H 1.08006 * 119.99795 * 120.00471 * 4 2 1 6 6 C 1.37874 * 120.00080 * 299.99740 * 4 2 1 7 7 N 1.31523 * 119.99947 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00040 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47190 * 89.99677 * 8 6 4 10 10 H 1.48496 * 109.47113 * 209.99534 * 8 6 4 11 11 H 1.48497 * 109.47323 * 329.99688 * 8 6 4 12 12 N 1.46907 * 109.46699 * 240.00419 * 2 1 3 13 13 C 1.46998 * 111.02285 * 183.78591 * 12 2 1 14 14 C 1.53062 * 109.37366 * 176.82000 * 13 12 2 15 15 N 1.46954 * 109.35871 * 58.40489 * 14 13 12 16 16 C 1.46903 * 110.99536 * 176.81353 * 15 14 13 17 17 C 1.46961 * 110.88027 * 300.67510 * 15 14 13 18 18 H 1.08997 * 109.49026 * 299.35826 * 17 15 14 19 19 C 1.53002 * 109.48681 * 179.29235 * 17 15 14 20 20 C 1.46956 * 111.00063 * 60.00090 * 12 2 1 21 21 H 1.08995 * 109.47153 * 299.99246 * 1 2 3 22 22 H 1.08997 * 109.47270 * 60.00179 * 1 2 3 23 23 H 1.09007 * 109.46827 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99836 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.48570 * 56.85644 * 13 12 2 26 26 H 1.08997 * 109.50642 * 296.80327 * 13 12 2 27 27 H 1.09002 * 109.48764 * 298.44108 * 14 13 12 28 28 H 1.08994 * 109.48697 * 178.37224 * 14 13 12 29 29 H 1.09002 * 109.47008 * 183.80001 * 16 15 14 30 30 H 1.08995 * 109.46900 * 303.79801 * 16 15 14 31 31 H 1.08994 * 109.47172 * 63.80030 * 16 15 14 32 32 H 1.09008 * 109.47270 * 300.11114 * 19 17 15 33 33 H 1.09000 * 109.47521 * 60.11011 * 19 17 15 34 34 H 1.09004 * 109.47320 * 180.11185 * 19 17 15 35 35 H 1.09002 * 109.49189 * 63.21630 * 20 12 2 36 36 H 1.09002 * 109.48707 * 303.17388 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 2.1382 -0.8593 3.5565 8 14 0.6249 1.2789 2.6541 9 1 -0.8027 0.8726 2.6998 10 1 0.9760 1.9948 3.9069 11 1 0.8471 2.1765 1.4922 12 7 2.0197 -0.6925 -1.1996 13 6 3.4863 -0.7914 -1.1897 14 6 3.9498 -1.5864 -2.4128 15 7 3.4781 -0.9197 -3.6345 16 6 3.9673 -1.6120 -4.8343 17 6 2.0119 -0.8209 -3.6446 18 1 1.5798 -1.8211 -3.6133 19 6 1.5571 -0.1075 -4.9194 20 6 1.5484 -0.0260 -2.4216 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9035 -0.5281 4.4375 25 1 3.8103 -1.2997 -0.2815 26 1 3.9187 0.2087 -1.2208 27 1 3.5396 -2.5953 -2.3675 28 1 5.0386 -1.6362 -2.4228 29 1 3.6604 -1.0602 -5.7227 30 1 5.0552 -1.6713 -4.8013 31 1 3.5494 -2.6180 -4.8690 32 1 1.9903 0.8923 -4.9506 33 1 1.8873 -0.6738 -5.7902 34 1 0.4697 -0.0327 -4.9257 35 1 1.9585 0.9829 -2.4669 36 1 0.4596 0.0242 -2.4117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082478106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = -2.624740 kcal Electronic energy + Delta-G solvation = -15134.097821 eV Core-core repulsion = 12845.671078 eV Total energy + Delta-G solvation = -2288.426743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.49367 -37.42900 -34.58372 -33.41318 -32.21082 -28.76979 -28.04230 -26.65709 -24.61421 -23.16464 -21.54785 -20.54268 -18.86562 -17.37014 -16.63701 -16.28586 -15.85206 -15.68293 -15.20753 -15.06860 -14.63988 -14.14536 -13.83056 -13.47698 -13.16066 -12.99174 -12.78320 -12.70144 -12.61003 -12.29369 -12.05078 -11.95756 -11.84220 -11.50850 -11.23747 -10.93115 -10.73197 -9.30142 -9.03237 -8.29672 -6.32949 1.28484 1.33985 1.43948 2.30430 2.98356 3.02848 3.16462 3.92979 4.08204 4.12645 4.33268 4.37236 4.47920 4.54785 4.62902 4.65359 4.67462 4.75889 4.77171 4.83785 4.92025 4.96254 5.02077 5.07473 5.15824 5.18719 5.38577 5.42246 5.62827 5.97267 6.09204 6.19211 6.37346 6.68565 6.73404 7.31896 8.86512 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049310 B = 0.008946 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.700864 B = 3129.239150 C = 3537.402439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.185 3.815 3 H -0.015 1.015 4 C -0.508 4.508 5 H 0.043 0.957 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.297 1.297 11 H -0.255 1.255 12 N -0.538 5.538 13 C 0.069 3.931 14 C 0.068 3.932 15 N -0.551 5.551 16 C 0.024 3.976 17 C 0.085 3.915 18 H 0.037 0.963 19 C -0.136 4.136 20 C 0.056 3.944 21 H 0.035 0.965 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.266 0.734 25 H 0.062 0.938 26 H 0.019 0.981 27 H 0.031 0.969 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.024 0.976 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.772 1.991 -16.942 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.077 3.923 3 H 0.003 0.997 4 C -0.546 4.546 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.189 1.189 10 H -0.225 1.225 11 H -0.179 1.179 12 N -0.263 5.263 13 C -0.060 4.060 14 C -0.060 4.060 15 N -0.276 5.276 16 C -0.124 4.124 17 C -0.024 4.024 18 H 0.055 0.945 19 C -0.194 4.194 20 C -0.073 4.073 21 H 0.054 0.946 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.771 1.982 -16.763 16.897 hybrid contribution -0.223 0.370 0.999 1.088 sum -0.994 2.352 -15.764 15.969 Atomic orbital electron populations 1.22088 0.96609 1.01468 0.99600 1.19507 0.92888 0.91404 0.88522 0.99741 1.21214 1.31024 1.12396 0.90011 0.93911 1.25762 0.97391 0.99906 0.95354 1.70031 1.47691 1.42460 0.98525 0.85854 0.79438 0.80015 0.77094 1.18882 1.22470 1.17924 1.62070 1.09948 1.52285 1.01962 1.21961 0.87999 0.98213 0.97806 1.22087 1.00110 0.95062 0.88735 1.62215 1.10334 1.52356 1.02719 1.22467 1.00964 0.96403 0.92537 1.21696 0.87255 0.98015 0.95424 0.94458 1.21816 1.01663 1.00727 0.95168 1.22333 1.00381 0.95275 0.89272 0.94638 0.91724 0.92564 0.92491 0.91963 0.96303 0.95105 0.89156 0.89516 0.90724 0.95719 0.92115 0.90774 0.90935 0.95726 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 8.44 71.99 0.61 -5.40 16 2 C 0.18 8.95 1.65 44.17 0.07 9.02 16 3 H -0.01 -0.75 7.20 -2.39 -0.02 -0.77 16 4 C -0.51 -29.48 8.47 25.60 0.22 -29.26 16 5 H 0.04 2.75 6.66 -2.91 -0.02 2.73 16 6 C 0.01 0.78 5.45 84.65 0.46 1.24 16 7 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 8 Si 0.95 45.58 24.37 68.60 1.67 47.25 16 9 H -0.26 -11.91 6.87 99.48 0.68 -11.23 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.25 -11.57 6.53 99.48 0.65 -10.92 16 12 N -0.54 -22.97 4.57 -874.71 -4.00 -26.97 16 13 C 0.07 2.84 5.33 86.31 0.46 3.30 16 14 C 0.07 2.22 5.62 86.31 0.49 2.70 16 15 N -0.55 -15.67 4.78 -896.53 -4.29 -19.95 16 16 C 0.02 0.50 9.13 127.69 1.17 1.66 16 17 C 0.08 2.39 2.56 44.92 0.12 2.51 16 18 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 19 C -0.14 -2.78 8.86 71.98 0.64 -2.15 16 20 C 0.06 1.91 4.60 86.31 0.40 2.30 16 21 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 22 H 0.06 2.29 6.34 -2.39 -0.02 2.28 16 23 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 24 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.06 2.94 6.14 -2.38 -0.01 2.92 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 2.56 8.13 -2.39 -0.02 2.55 16 29 H 0.09 1.50 6.25 -2.39 -0.01 1.48 16 30 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 33 H 0.07 1.25 6.36 -2.39 -0.02 1.23 16 34 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 2.71 6.14 -2.39 -0.01 2.69 16 Total: -1.00 -65.75 266.38 -0.74 -66.49 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.96 Total: 6.58 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.62 Total: -14.08 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -7.99 Total: -106.24 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.25 kcal Total: -65.75 -0.74 -66.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.866 kcal (2) G-P(sol) polarization free energy of solvation -65.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds