Wall clock time and date at job start Mon Mar 30 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47127 * 2 1 4 4 C 1.50696 * 109.47039 * 119.99493 * 2 1 3 5 5 H 1.08005 * 119.99854 * 120.00217 * 4 2 1 6 6 C 1.37876 * 120.00485 * 300.00115 * 4 2 1 7 7 N 1.31514 * 119.99912 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46707 * 89.99751 * 8 6 4 10 10 H 1.48495 * 109.46956 * 210.00036 * 8 6 4 11 11 H 1.48503 * 109.46875 * 330.00395 * 8 6 4 12 12 N 1.46897 * 109.47162 * 240.00103 * 2 1 3 13 13 C 1.46897 * 110.99947 * 183.95568 * 12 2 1 14 14 C 1.46898 * 111.00234 * 59.99523 * 12 2 1 15 15 H 1.08992 * 109.53578 * 309.90492 * 14 12 2 16 16 C 1.53120 * 109.50333 * 189.80123 * 14 12 2 17 17 C 1.53120 * 109.15972 * 182.40441 * 16 14 12 18 18 C 1.53034 * 109.27663 * 57.65936 * 17 16 14 19 19 N 1.46850 * 109.52564 * 300.81923 * 18 17 16 20 20 C 1.46850 * 111.19713 * 61.73898 * 19 18 17 21 21 H 1.08999 * 109.47166 * 60.00066 * 1 2 3 22 22 H 1.08994 * 109.47505 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47487 * 300.00093 * 1 2 3 24 24 H 0.97000 * 120.00709 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46894 * 296.03964 * 13 12 2 26 26 H 1.08999 * 109.47611 * 56.04147 * 13 12 2 27 27 H 1.09002 * 109.47363 * 176.04154 * 13 12 2 28 28 H 1.08996 * 109.52458 * 302.31776 * 16 14 12 29 29 H 1.09005 * 109.51651 * 62.50552 * 16 14 12 30 30 H 1.09000 * 109.49976 * 177.59581 * 17 16 14 31 31 H 1.09002 * 109.50465 * 297.67936 * 17 16 14 32 32 H 1.09007 * 109.46201 * 60.83416 * 18 17 16 33 33 H 1.09001 * 109.46285 * 180.81057 * 18 17 16 34 34 H 1.00901 * 110.99645 * 297.64705 * 19 18 17 35 35 H 1.08995 * 109.45831 * 178.23975 * 20 19 18 36 36 H 1.08998 * 109.45719 * 58.27825 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.6296 -0.5456 4.4124 10 1 1.3430 -0.9490 5.1120 11 1 2.4858 -2.5660 3.7121 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7945 -1.1870 14 6 1.5486 -0.0264 -2.4211 15 1 0.4720 0.1313 -2.3582 16 6 1.8670 -0.9022 -3.6360 17 6 1.4272 -0.1743 -4.9093 18 6 2.1368 1.1793 -4.9881 19 7 1.7997 1.9798 -3.8040 20 6 2.2547 1.3229 -2.5720 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.7088 1.1616 3.4844 25 1 3.9191 0.2044 -1.2300 26 1 3.8069 -1.2914 -0.2718 27 1 3.8164 -1.3722 -2.0499 28 1 2.9394 -1.0924 -3.6770 29 1 1.3313 -1.8480 -3.5536 30 1 1.6900 -0.7743 -5.7806 31 1 0.3485 -0.0196 -4.8859 32 1 3.2149 1.0225 -5.0257 33 1 1.8149 1.7063 -5.8863 34 1 0.8098 2.1717 -3.7672 35 1 2.0186 1.9543 -1.7154 36 1 3.3321 1.1656 -2.6209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082499475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:08 Heat of formation + Delta-G solvation = 3.436985 kcal Electronic energy + Delta-G solvation = -15185.765684 eV Core-core repulsion = 12897.601797 eV Total energy + Delta-G solvation = -2288.163887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19097 -35.91492 -32.81083 -31.33212 -29.60345 -28.63647 -25.35260 -24.15916 -23.35391 -22.11907 -20.17950 -18.69237 -16.39855 -15.63590 -15.31285 -14.59379 -14.52235 -14.15961 -13.63272 -13.18338 -12.71057 -12.34880 -12.15947 -11.76372 -11.56478 -11.14910 -11.03026 -10.95643 -10.84707 -10.81418 -10.47140 -10.15353 -10.03365 -9.95121 -9.55214 -8.87430 -8.50787 -8.30925 -6.93669 -6.00554 -4.04886 3.30515 3.37220 3.41202 4.39413 4.51987 4.91644 5.09257 5.20807 5.30196 5.34140 5.53346 5.64406 5.77945 5.82125 6.01071 6.05840 6.16957 6.24269 6.33773 6.39810 6.53057 6.64907 6.81029 6.88887 7.05866 7.14161 7.22697 7.54815 7.57753 7.75324 7.83789 8.22132 8.33848 8.62709 9.01719 9.60044 11.06177 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055863 B = 0.008063 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.108648 B = 3471.897564 C = 3616.401211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.031 3.969 14 C 0.047 3.953 15 H 0.079 0.921 16 C -0.110 4.110 17 C -0.156 4.156 18 C 0.057 3.943 19 N -0.686 5.686 20 C 0.024 3.976 21 H 0.006 0.994 22 H 0.033 0.967 23 H 0.085 0.915 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.337 0.663 35 H 0.078 0.922 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 -0.493 -11.410 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.253 5.253 13 C -0.117 4.117 14 C -0.064 4.064 15 H 0.097 0.903 16 C -0.148 4.148 17 C -0.196 4.196 18 C -0.073 4.073 19 N -0.314 5.314 20 C -0.107 4.107 21 H 0.025 0.975 22 H 0.052 0.948 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.538 -0.447 -11.285 11.398 hybrid contribution -0.062 -0.386 0.980 1.055 sum 1.476 -0.832 -10.305 10.444 Atomic orbital electron populations 1.21846 0.97937 0.99521 0.99726 1.19248 0.92156 0.92203 0.85896 0.98084 1.21172 1.30969 1.12280 0.89832 0.91913 1.24931 0.95216 0.95098 0.99004 1.69888 1.36916 1.23050 1.23390 0.86536 0.78457 0.80072 0.82579 1.20800 1.21267 1.19889 1.62281 1.09179 1.51990 1.01883 1.22285 0.89162 0.98888 1.01366 1.22410 1.00150 0.92468 0.91351 0.90302 1.21615 1.01225 0.98833 0.93175 1.22278 1.00584 0.98266 0.98436 1.22003 1.00227 0.91697 0.93373 1.60690 1.21787 1.46465 1.02448 1.22780 1.00462 0.95412 0.92012 0.97489 0.94818 0.89675 0.93005 0.96630 0.90588 0.93869 0.92156 0.91650 0.91923 0.92220 0.91356 0.91329 0.84594 0.90342 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.76 37.16 0.33 -2.92 16 2 C 0.21 5.28 1.85 -68.87 -0.13 5.16 16 3 H 0.00 0.04 6.64 -51.93 -0.34 -0.30 16 4 C -0.50 -13.79 7.88 -34.44 -0.27 -14.07 16 5 H 0.06 1.72 6.41 -52.48 -0.34 1.38 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.53 -11.34 4.57 -228.21 -1.04 -12.38 16 13 C 0.03 0.62 8.50 60.06 0.51 1.13 16 14 C 0.05 0.85 2.15 -67.63 -0.15 0.70 16 15 H 0.08 1.50 5.84 -51.93 -0.30 1.20 16 16 C -0.11 -1.68 5.26 -26.61 -0.14 -1.82 16 17 C -0.16 -1.93 6.08 -26.65 -0.16 -2.09 16 18 C 0.06 0.71 6.55 -3.83 -0.03 0.68 16 19 N -0.69 -10.08 6.87 -113.81 -0.78 -10.86 16 20 C 0.02 0.42 5.10 -3.83 -0.02 0.40 16 21 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.02 0.30 6.19 -51.93 -0.32 -0.02 16 26 H 0.08 1.61 6.10 -51.93 -0.32 1.30 16 27 H 0.04 0.74 6.42 -51.93 -0.33 0.41 16 28 H 0.06 0.91 6.45 -51.93 -0.34 0.58 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.34 4.66 8.86 -39.29 -0.35 4.31 16 35 H 0.08 1.55 6.73 -51.93 -0.35 1.20 16 36 H 0.07 1.27 6.28 -51.93 -0.33 0.94 16 LS Contribution 266.41 15.07 4.01 4.01 Total: -1.00 -27.95 266.41 -7.98 -35.92 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.62 Total: 3.10 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.15 Total: -11.29 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -1.20 Total: -48.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.95 -7.98 -35.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082499475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.361 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds