Wall clock time and date at job start Mon Mar 30 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47127 * 2 1 4 4 C 1.50696 * 109.47039 * 119.99493 * 2 1 3 5 5 H 1.08005 * 119.99854 * 120.00217 * 4 2 1 6 6 C 1.37876 * 120.00485 * 300.00115 * 4 2 1 7 7 N 1.31514 * 119.99912 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46707 * 89.99751 * 8 6 4 10 10 H 1.48495 * 109.46956 * 210.00036 * 8 6 4 11 11 H 1.48503 * 109.46875 * 330.00395 * 8 6 4 12 12 N 1.46897 * 109.47162 * 240.00103 * 2 1 3 13 13 C 1.46897 * 110.99947 * 183.95568 * 12 2 1 14 14 C 1.46898 * 111.00234 * 59.99523 * 12 2 1 15 15 H 1.08992 * 109.53578 * 309.90492 * 14 12 2 16 16 C 1.53120 * 109.50333 * 189.80123 * 14 12 2 17 17 C 1.53120 * 109.15972 * 182.40441 * 16 14 12 18 18 C 1.53034 * 109.27663 * 57.65936 * 17 16 14 19 19 N 1.46850 * 109.52564 * 300.81923 * 18 17 16 20 20 C 1.46850 * 111.19713 * 61.73898 * 19 18 17 21 21 H 1.08999 * 109.47166 * 60.00066 * 1 2 3 22 22 H 1.08994 * 109.47505 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47487 * 300.00093 * 1 2 3 24 24 H 0.97000 * 120.00709 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46894 * 296.03964 * 13 12 2 26 26 H 1.08999 * 109.47611 * 56.04147 * 13 12 2 27 27 H 1.09002 * 109.47363 * 176.04154 * 13 12 2 28 28 H 1.08996 * 109.52458 * 302.31776 * 16 14 12 29 29 H 1.09005 * 109.51651 * 62.50552 * 16 14 12 30 30 H 1.09000 * 109.49976 * 177.59581 * 17 16 14 31 31 H 1.09002 * 109.50465 * 297.67936 * 17 16 14 32 32 H 1.09007 * 109.46201 * 60.83416 * 18 17 16 33 33 H 1.09001 * 109.46285 * 180.81057 * 18 17 16 34 34 H 1.00901 * 110.99645 * 297.64705 * 19 18 17 35 35 H 1.08995 * 109.45831 * 178.23975 * 20 19 18 36 36 H 1.08998 * 109.45719 * 58.27825 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.6296 -0.5456 4.4124 10 1 1.3430 -0.9490 5.1120 11 1 2.4858 -2.5660 3.7121 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7945 -1.1870 14 6 1.5486 -0.0264 -2.4211 15 1 0.4720 0.1313 -2.3582 16 6 1.8670 -0.9022 -3.6360 17 6 1.4272 -0.1743 -4.9093 18 6 2.1368 1.1793 -4.9881 19 7 1.7997 1.9798 -3.8040 20 6 2.2547 1.3229 -2.5720 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.7088 1.1616 3.4844 25 1 3.9191 0.2044 -1.2300 26 1 3.8069 -1.2914 -0.2718 27 1 3.8164 -1.3722 -2.0499 28 1 2.9394 -1.0924 -3.6770 29 1 1.3313 -1.8480 -3.5536 30 1 1.6900 -0.7743 -5.7806 31 1 0.3485 -0.0196 -4.8859 32 1 3.2149 1.0225 -5.0257 33 1 1.8149 1.7063 -5.8863 34 1 0.8098 2.1717 -3.7672 35 1 2.0186 1.9543 -1.7154 36 1 3.3321 1.1656 -2.6209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082499475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:08 Heat of formation + Delta-G solvation = -16.733396 kcal Electronic energy + Delta-G solvation = -15186.640337 eV Core-core repulsion = 12897.601797 eV Total energy + Delta-G solvation = -2289.038540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60538 -37.47675 -34.75116 -32.56655 -31.37578 -30.19267 -27.30073 -25.88830 -24.62428 -23.56740 -21.62852 -20.29006 -18.38856 -17.13406 -16.92850 -16.15552 -15.89759 -15.54944 -15.25481 -14.92880 -14.24780 -13.75052 -13.59011 -13.36415 -13.04448 -12.96002 -12.77282 -12.68482 -12.28946 -12.23533 -12.10176 -11.96872 -11.84042 -11.55452 -11.05666 -10.85168 -10.52093 -9.73280 -8.56416 -8.11187 -6.22918 1.41090 1.42175 1.52724 2.41760 3.14979 3.24134 3.55988 3.80716 4.04204 4.16392 4.22855 4.38032 4.49620 4.59343 4.65191 4.75611 4.81117 4.90083 5.01192 5.04327 5.04810 5.08694 5.13932 5.24714 5.32224 5.41168 5.52300 5.73000 5.79517 6.03182 6.26263 6.39663 6.46593 6.78448 6.92752 7.46221 8.94499 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055863 B = 0.008063 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.108648 B = 3471.897564 C = 3616.401211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.217 3.783 3 H -0.031 1.031 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.538 5.538 13 C 0.036 3.964 14 C 0.048 3.952 15 H 0.067 0.933 16 C -0.105 4.105 17 C -0.147 4.147 18 C 0.056 3.944 19 N -0.688 5.688 20 C 0.038 3.962 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.261 0.739 25 H 0.012 0.988 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.343 0.657 35 H 0.044 0.956 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -1.225 -12.953 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.262 5.262 13 C -0.112 4.112 14 C -0.063 4.063 15 H 0.085 0.915 16 C -0.143 4.143 17 C -0.186 4.186 18 C -0.073 4.073 19 N -0.317 5.317 20 C -0.093 4.093 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.160 0.840 35 H 0.063 0.937 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.928 -1.182 -12.855 13.052 hybrid contribution -0.182 -0.133 1.388 1.406 sum 1.746 -1.315 -11.468 11.674 Atomic orbital electron populations 1.21654 0.97729 0.98922 0.99479 1.19003 0.92263 0.90525 0.87157 1.01347 1.21474 1.31049 1.12297 0.91109 0.92326 1.25711 0.95397 0.95791 1.01900 1.70017 1.37780 1.24212 1.24004 0.85542 0.77995 0.79052 0.78955 1.20210 1.20883 1.19376 1.62225 1.10148 1.51910 1.01906 1.22247 0.88226 0.98969 1.01732 1.22481 0.99319 0.93401 0.91085 0.91500 1.21573 1.01407 0.98292 0.92991 1.22221 1.00718 0.98080 0.97627 1.22123 1.00412 0.91767 0.92982 1.60665 1.22273 1.46699 1.02079 1.22480 1.00072 0.94471 0.92287 0.95414 0.95346 0.92225 0.92979 0.96921 0.92478 0.90873 0.91865 0.92041 0.89351 0.91853 0.91303 0.88757 0.83981 0.93729 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.76 71.98 0.63 -5.35 16 2 C 0.22 11.16 1.85 44.17 0.08 11.24 16 3 H -0.03 -1.76 6.64 -2.38 -0.02 -1.78 16 4 C -0.52 -29.00 7.88 25.60 0.20 -28.80 16 5 H 0.06 3.24 6.41 -2.91 -0.02 3.22 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 8 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 N -0.54 -23.05 4.57 -875.92 -4.01 -27.06 16 13 C 0.04 1.43 8.50 127.69 1.09 2.51 16 14 C 0.05 1.68 2.15 44.97 0.10 1.77 16 15 H 0.07 2.50 5.84 -2.39 -0.01 2.49 16 16 C -0.10 -2.92 5.26 30.67 0.16 -2.76 16 17 C -0.15 -3.11 6.08 30.65 0.19 -2.92 16 18 C 0.06 1.22 6.55 86.32 0.57 1.78 16 19 N -0.69 -19.08 6.87 -514.00 -3.53 -22.61 16 20 C 0.04 1.31 5.10 86.33 0.44 1.75 16 21 H 0.03 1.22 6.20 -2.39 -0.01 1.20 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 24 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.01 0.49 6.19 -2.39 -0.01 0.48 16 26 H 0.06 2.43 6.10 -2.39 -0.01 2.42 16 27 H 0.07 2.40 6.42 -2.39 -0.02 2.38 16 28 H 0.06 1.73 6.45 -2.39 -0.02 1.72 16 29 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.34 8.92 8.86 -89.69 -0.79 8.12 16 35 H 0.04 1.82 6.73 -2.39 -0.02 1.81 16 36 H 0.07 2.38 6.28 -2.39 -0.01 2.36 16 Total: -1.00 -60.22 266.41 -1.10 -61.32 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.27 Total: 15.25 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 3.90 Total: -19.73 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -7.29 Total: -102.99 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.22 -1.10 -61.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082499475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.585 kcal (2) G-P(sol) polarization free energy of solvation -60.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds