Wall clock time and date at job start Mon Mar 30 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47259 * 2 1 4 4 C 1.50704 * 109.47162 * 239.99864 * 2 1 3 5 5 H 1.07999 * 120.00358 * 240.00307 * 4 2 1 6 6 C 1.37878 * 119.99725 * 60.27525 * 4 2 1 7 7 N 1.31519 * 119.99863 * 359.72414 * 6 4 2 8 8 Si 1.86798 * 119.99993 * 179.72746 * 6 4 2 9 9 H 1.48499 * 109.46986 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47156 * 119.99856 * 8 6 4 11 11 H 1.48504 * 109.46975 * 239.99951 * 8 6 4 12 12 N 1.46907 * 109.47159 * 120.00158 * 2 1 3 13 13 C 1.46896 * 110.99525 * 304.50210 * 12 2 1 14 14 C 1.46900 * 110.99898 * 180.55022 * 12 2 1 15 15 H 1.09005 * 109.50066 * 309.26119 * 14 12 2 16 16 C 1.53117 * 109.50049 * 189.14891 * 14 12 2 17 17 C 1.53124 * 109.15709 * 182.40355 * 16 14 12 18 18 C 1.53028 * 109.27928 * 57.65459 * 17 16 14 19 19 N 1.46849 * 109.52412 * 300.81840 * 18 17 16 20 20 C 1.46845 * 111.19824 * 61.74274 * 19 18 17 21 21 H 1.08999 * 109.46794 * 306.03466 * 1 2 3 22 22 H 1.08997 * 109.47383 * 66.04066 * 1 2 3 23 23 H 1.09003 * 109.46926 * 186.03724 * 1 2 3 24 24 H 0.96997 * 119.99676 * 179.97438 * 7 6 4 25 25 H 1.08994 * 109.47355 * 60.00568 * 13 12 2 26 26 H 1.09003 * 109.46842 * 180.02562 * 13 12 2 27 27 H 1.09001 * 109.47703 * 299.99637 * 13 12 2 28 28 H 1.08997 * 109.52150 * 302.30813 * 16 14 12 29 29 H 1.08996 * 109.52717 * 62.49851 * 16 14 12 30 30 H 1.09001 * 109.50216 * 297.70965 * 17 16 14 31 31 H 1.09003 * 109.53003 * 177.61481 * 17 16 14 32 32 H 1.09002 * 109.46297 * 180.80257 * 18 17 16 33 33 H 1.09006 * 109.46666 * 60.83188 * 18 17 16 34 34 H 1.00897 * 110.99826 * 297.64449 * 19 18 17 35 35 H 1.08996 * 109.46594 * 178.24060 * 20 19 18 36 36 H 1.09001 * 109.45325 * 58.26777 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.7039 -0.2361 -2.4827 7 7 0.9478 0.8332 -2.6034 8 14 2.3329 -1.1122 -4.0079 9 1 3.1573 -2.2793 -3.6038 10 1 1.1812 -1.5771 -4.8220 11 1 3.1606 -0.1762 -4.8105 12 7 2.0197 -0.6926 1.1995 13 6 1.4627 -0.0914 2.4186 14 6 3.4881 -0.7007 1.2400 15 1 3.8764 -1.0635 0.2882 16 6 3.9632 -1.6185 2.3698 17 6 5.4920 -1.5745 2.4437 18 6 5.9460 -0.1295 2.6619 19 7 5.4673 0.7078 1.5546 20 6 4.0002 0.7190 1.4930 21 1 -0.3633 0.6046 0.8310 22 1 -0.3634 0.4173 -0.9391 23 1 -0.3633 -1.0220 0.1081 24 1 0.7171 1.1672 -3.4843 25 1 0.3753 -0.1614 2.3941 26 1 1.8418 -0.6228 3.2916 27 1 1.7583 0.9563 2.4749 28 1 3.5428 -1.2785 3.3163 29 1 3.6373 -2.6395 2.1713 30 1 5.9123 -1.9512 1.5112 31 1 5.8346 -2.1929 3.2734 32 1 7.0347 -0.0928 2.7007 33 1 5.5365 0.2420 3.6014 34 1 5.8638 0.4075 0.6767 35 1 3.6756 1.3720 0.6829 36 1 3.6000 1.0863 2.4380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082499477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:11 Heat of formation + Delta-G solvation = -18.310510 kcal Electronic energy + Delta-G solvation = -15279.354475 eV Core-core repulsion = 12990.247547 eV Total energy + Delta-G solvation = -2289.106929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54345 -37.49271 -34.77002 -32.56761 -31.53029 -29.65786 -27.60208 -26.07912 -24.59017 -23.30220 -21.40898 -20.50716 -18.28012 -17.30232 -16.86878 -16.12034 -15.84913 -15.56623 -15.18886 -14.93680 -14.05701 -13.82343 -13.68622 -13.44307 -13.06531 -12.93975 -12.63410 -12.52242 -12.38413 -12.30698 -12.10833 -11.96847 -11.79450 -11.56230 -11.03501 -10.87769 -10.50479 -9.71450 -8.55191 -8.10860 -6.22308 1.38964 1.41133 1.52166 2.41317 3.15391 3.25857 3.57722 3.88343 4.07812 4.19551 4.24173 4.42324 4.53641 4.60703 4.67525 4.70717 4.83113 4.91252 4.98975 5.02950 5.04751 5.10272 5.15113 5.22529 5.31860 5.46269 5.53220 5.72017 5.81012 6.04455 6.29682 6.43964 6.47683 6.77519 6.92903 7.46659 8.94656 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.010613 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.914090 B = 2637.635492 C = 3090.668978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.510 4.510 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.540 5.540 13 C 0.022 3.978 14 C 0.061 3.939 15 H 0.059 0.941 16 C -0.105 4.105 17 C -0.148 4.148 18 C 0.057 3.943 19 N -0.689 5.689 20 C 0.043 3.957 21 H 0.028 0.972 22 H 0.061 0.939 23 H 0.031 0.969 24 H 0.261 0.739 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.014 0.986 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.340 0.660 35 H 0.041 0.959 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 -3.108 9.677 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.110 3.890 3 H -0.013 1.013 4 C -0.549 4.549 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.264 5.264 13 C -0.126 4.126 14 C -0.049 4.049 15 H 0.078 0.922 16 C -0.143 4.143 17 C -0.188 4.188 18 C -0.072 4.072 19 N -0.318 5.318 20 C -0.089 4.089 21 H 0.047 0.953 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.060 0.940 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.060 -2.884 9.886 12.485 hybrid contribution -0.080 -0.202 -1.513 1.529 sum 6.979 -3.086 8.373 11.328 Atomic orbital electron populations 1.21702 0.97710 0.98640 1.00332 1.19033 0.92255 0.90504 0.87255 1.01269 1.21364 1.30700 1.11813 0.91019 0.92965 1.25672 0.95519 0.95773 1.01768 1.70019 1.37912 1.24145 1.23884 0.85534 0.78133 0.78601 0.79531 1.19331 1.20675 1.20704 1.62240 1.06874 1.54694 1.02547 1.22441 1.00364 0.96579 0.93251 1.22256 0.88288 0.95489 0.98907 0.92240 1.21597 0.95991 0.99151 0.97571 1.22225 0.94804 0.99032 1.02722 1.22119 1.00795 0.89938 0.94327 1.60682 1.06577 1.55997 1.08539 1.22428 0.88646 0.97108 1.00679 0.95319 0.92070 0.94997 0.93006 0.91953 0.90368 0.96720 0.91390 0.92359 0.92472 0.89233 0.88937 0.90915 0.84230 0.94014 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.45 71.98 0.61 -5.65 16 2 C 0.22 11.07 1.85 44.17 0.08 11.15 16 3 H -0.03 -1.71 6.59 -2.39 -0.02 -1.73 16 4 C -0.51 -28.26 7.80 25.60 0.20 -28.06 16 5 H 0.05 2.92 6.78 -2.91 -0.02 2.90 16 6 C 0.01 0.62 5.29 84.65 0.45 1.06 16 7 N -0.92 -53.34 11.30 21.45 0.24 -53.10 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.54 -23.02 4.58 -875.88 -4.01 -27.03 16 13 C 0.02 0.78 8.22 127.69 1.05 1.83 16 14 C 0.06 2.32 2.16 44.97 0.10 2.41 16 15 H 0.06 2.62 6.26 -2.38 -0.01 2.61 16 16 C -0.11 -3.11 5.25 30.67 0.16 -2.95 16 17 C -0.15 -3.48 6.08 30.64 0.19 -3.29 16 18 C 0.06 1.34 6.55 86.32 0.57 1.91 16 19 N -0.69 -20.90 6.87 -514.02 -3.53 -24.43 16 20 C 0.04 1.55 5.11 86.33 0.44 1.99 16 21 H 0.03 1.26 6.70 -2.39 -0.02 1.24 16 22 H 0.06 3.37 5.94 -2.39 -0.01 3.36 16 23 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.06 2.21 6.37 -2.39 -0.02 2.19 16 26 H 0.08 2.34 6.22 -2.39 -0.01 2.33 16 27 H 0.01 0.52 6.44 -2.39 -0.02 0.50 16 28 H 0.07 1.86 6.35 -2.39 -0.02 1.85 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.34 10.28 8.86 -89.70 -0.79 9.48 16 35 H 0.04 1.83 6.69 -2.39 -0.02 1.81 16 36 H 0.07 2.44 6.37 -2.39 -0.02 2.43 16 Total: -1.00 -59.99 267.12 -1.17 -61.16 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.27 Total: 16.88 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 3.84 Total: -19.60 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -7.30 Total: -104.57 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.99 -1.17 -61.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082499477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.847 kcal (2) G-P(sol) polarization free energy of solvation -59.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds