Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47007 * 2 1 4 4 C 1.50701 * 109.46872 * 120.00312 * 2 1 3 5 5 H 1.08003 * 120.00170 * 114.25056 * 4 2 1 6 6 C 1.37885 * 119.99934 * 294.24367 * 4 2 1 7 7 N 1.31507 * 120.00141 * 161.62987 * 6 4 2 8 8 Si 1.86804 * 119.99807 * 341.62575 * 6 4 2 9 9 H 1.48494 * 109.46930 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.46793 * 60.00067 * 8 6 4 11 11 H 1.48494 * 109.47176 * 300.00233 * 8 6 4 12 12 N 1.46905 * 109.47096 * 239.99972 * 2 1 3 13 13 C 1.46961 * 110.99672 * 306.04871 * 12 2 1 14 14 C 1.53050 * 109.35799 * 176.81154 * 13 12 2 15 15 H 1.09005 * 109.48919 * 178.36751 * 14 13 12 16 16 C 1.52994 * 109.49143 * 298.40717 * 14 13 12 17 17 N 1.46958 * 109.36572 * 58.39930 * 14 13 12 18 18 C 1.46948 * 110.88383 * 300.67688 * 17 14 13 19 19 C 1.46958 * 110.99953 * 182.24641 * 12 2 1 20 20 H 1.09005 * 109.48352 * 63.22591 * 19 12 2 21 21 C 1.52993 * 109.48764 * 303.15987 * 19 12 2 22 22 H 1.09002 * 109.47525 * 306.43974 * 1 2 3 23 23 H 1.09003 * 109.47181 * 66.43724 * 1 2 3 24 24 H 1.09005 * 109.47423 * 186.43753 * 1 2 3 25 25 H 0.97009 * 119.99989 * 0.52788 * 7 6 4 26 26 H 1.09001 * 109.48701 * 296.77599 * 13 12 2 27 27 H 1.08996 * 109.49268 * 56.84821 * 13 12 2 28 28 H 1.09007 * 109.46901 * 60.00388 * 16 14 13 29 29 H 1.09002 * 109.47149 * 179.97438 * 16 14 13 30 30 H 1.08993 * 109.47468 * 300.00521 * 16 14 13 31 31 H 1.00905 * 110.99654 * 64.54807 * 17 14 13 32 32 H 1.08994 * 109.49532 * 179.28795 * 18 17 14 33 33 H 1.08998 * 109.48903 * 299.33506 * 18 17 14 34 34 H 1.08997 * 109.47542 * 60.00027 * 21 19 12 35 35 H 1.09005 * 109.46720 * 180.02562 * 21 19 12 36 36 H 1.09002 * 109.46917 * 299.99523 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5744 -1.6396 1.1341 6 6 1.7997 -0.1743 2.4793 7 7 1.9015 -0.9318 3.5495 8 14 1.3403 1.6282 2.6511 9 1 1.1441 1.9543 4.0864 10 1 0.0819 1.8912 1.9077 11 1 2.4289 2.4716 2.0956 12 7 2.0197 -0.6925 -1.1995 13 6 1.4340 -2.0360 -1.3078 14 6 1.9058 -2.6918 -2.6077 15 1 1.4959 -3.6995 -2.6763 16 6 1.4259 -1.8633 -3.8010 17 7 3.3739 -2.7582 -2.6151 18 6 3.9595 -1.4148 -2.5067 19 6 3.4877 -0.7589 -1.2068 20 1 3.8292 -1.3495 -0.3567 21 6 4.0630 0.6555 -1.1105 22 1 -0.3634 0.6104 0.8267 23 1 -0.3634 0.4108 -0.9420 24 1 -0.3634 -1.0212 0.1152 25 1 2.1476 -1.8660 3.4609 26 1 1.7523 -2.6410 -0.4588 27 1 0.3467 -1.9594 -1.3130 28 1 1.8366 -0.8559 -3.7326 29 1 1.7625 -2.3304 -4.7266 30 1 0.3371 -1.8130 -3.7940 31 1 3.7123 -3.3606 -1.8797 32 1 5.0468 -1.4913 -2.5015 33 1 3.6415 -0.8099 -3.3558 34 1 3.7253 1.1230 -0.1857 35 1 5.1520 0.6059 -1.1165 36 1 3.7219 1.2452 -1.9614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083118671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = 4.250748 kcal Electronic energy + Delta-G solvation = -15603.539113 eV Core-core repulsion = 13315.410514 eV Total energy + Delta-G solvation = -2288.128599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.27935 -35.19984 -32.75544 -32.03299 -29.54145 -28.19924 -25.39579 -25.05414 -23.83654 -20.97183 -19.73502 -18.81097 -17.21757 -15.89551 -14.99529 -14.43281 -14.36949 -14.04239 -13.40240 -12.94905 -12.78757 -12.49063 -11.82004 -11.76894 -11.51095 -11.28973 -11.15993 -10.99990 -10.94165 -10.54668 -10.45493 -10.32208 -10.12091 -9.76126 -9.55997 -9.04915 -8.41489 -7.95278 -7.28763 -6.40177 -4.12176 3.34475 3.38656 3.56143 4.44458 4.58412 4.82415 5.21432 5.43858 5.53666 5.64500 5.66823 5.84053 5.86287 6.09366 6.11401 6.22956 6.29852 6.39229 6.41600 6.47429 6.58782 6.62424 6.66628 6.70485 6.85521 6.88106 7.16448 7.23069 7.37102 7.69618 7.87986 8.12528 8.15944 8.31893 8.87397 9.56740 10.87820 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038933 B = 0.011094 C = 0.010651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.005655 B = 2523.363387 C = 2628.175284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.178 3.822 3 H 0.035 0.965 4 C -0.624 4.624 5 H 0.054 0.946 6 C 0.035 3.965 7 N -0.904 5.904 8 Si 1.042 2.958 9 H -0.287 1.287 10 H -0.272 1.272 11 H -0.283 1.283 12 N -0.518 5.518 13 C 0.030 3.970 14 C 0.081 3.919 15 H 0.073 0.927 16 C -0.131 4.131 17 N -0.685 5.685 18 C 0.060 3.940 19 C 0.053 3.947 20 H 0.046 0.954 21 C -0.137 4.137 22 H 0.052 0.948 23 H 0.030 0.970 24 H 0.044 0.956 25 H 0.266 0.734 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.334 0.666 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 0.305 -10.806 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.071 3.929 3 H 0.053 0.947 4 C -0.662 4.662 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.871 3.129 9 H -0.213 1.213 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.243 5.243 13 C -0.101 4.101 14 C -0.029 4.029 15 H 0.091 0.909 16 C -0.189 4.189 17 N -0.313 5.313 18 C -0.070 4.070 19 C -0.057 4.057 20 H 0.064 0.936 21 C -0.195 4.195 22 H 0.071 0.929 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.151 0.849 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.341 1.714 -10.809 10.949 hybrid contribution 0.466 -1.560 0.801 1.815 sum 0.807 0.154 -10.008 10.042 Atomic orbital electron populations 1.22262 0.98574 1.00619 0.99076 1.19594 0.91400 0.94683 0.87257 0.94720 1.22425 1.40902 1.10456 0.92460 0.92777 1.25697 0.94001 1.05205 0.92199 1.70865 1.43130 1.08180 1.31578 0.84090 0.77249 0.75621 0.75953 1.21285 1.19888 1.20966 1.62551 1.05036 1.16121 1.40578 1.22645 1.00186 0.91267 0.95954 1.21674 0.87679 0.98412 0.95162 0.90926 1.21680 1.00014 1.00905 0.96298 1.60884 1.06943 1.11714 1.51764 1.22203 0.97943 0.89439 0.97392 1.22099 0.89753 0.97142 0.96718 0.93579 1.21714 0.98851 0.96514 1.02403 0.92884 0.95113 0.93733 0.92435 0.94744 0.90948 0.91309 0.93475 0.93051 0.84897 0.91552 0.90495 0.91488 0.93559 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.20 37.16 0.30 -2.94 16 2 C 0.18 4.14 1.51 -68.86 -0.10 4.03 16 3 H 0.04 0.83 5.01 -51.93 -0.26 0.57 16 4 C -0.62 -16.80 7.34 -34.44 -0.25 -17.05 16 5 H 0.05 1.60 6.08 -52.48 -0.32 1.28 16 6 C 0.04 0.99 5.34 -17.82 -0.10 0.89 16 7 N -0.90 -27.42 13.70 55.43 0.76 -26.66 16 8 Si 1.04 24.88 26.47 -169.99 -4.50 20.38 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.27 -6.03 5.51 56.52 0.31 -5.72 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.52 -10.52 3.89 -219.94 -0.86 -11.37 16 13 C 0.03 0.57 4.31 -3.76 -0.02 0.55 16 14 C 0.08 1.29 3.69 -67.66 -0.25 1.04 16 15 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 16 C -0.13 -1.93 8.84 37.15 0.33 -1.61 16 17 N -0.69 -10.77 6.70 -106.60 -0.71 -11.49 16 18 C 0.06 0.96 5.62 -3.77 -0.02 0.94 16 19 C 0.05 1.02 2.15 -67.66 -0.15 0.87 16 20 H 0.05 1.03 6.56 -51.93 -0.34 0.69 16 21 C -0.14 -2.46 8.86 37.15 0.33 -2.13 16 22 H 0.05 1.20 4.89 -51.93 -0.25 0.94 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.99 6.65 -51.93 -0.35 0.64 16 25 H 0.27 8.09 8.72 -40.82 -0.36 7.74 16 26 H 0.03 0.76 6.84 -51.93 -0.36 0.40 16 27 H 0.07 1.40 6.17 -51.93 -0.32 1.08 16 28 H 0.07 1.10 5.94 -51.93 -0.31 0.79 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.33 5.22 8.89 -39.29 -0.35 4.87 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.22 6.35 -51.93 -0.33 0.89 16 34 H 0.07 1.38 6.39 -51.93 -0.33 1.05 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 261.84 15.07 3.95 3.95 Total: -1.00 -28.37 261.84 -7.00 -35.37 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.72 Total: 5.22 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.81 Total: -49.52 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.50 Total: 20.38 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.37 -7.00 -35.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.626 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds