Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47007 * 2 1 4 4 C 1.50701 * 109.46872 * 120.00312 * 2 1 3 5 5 H 1.08003 * 120.00170 * 114.25056 * 4 2 1 6 6 C 1.37885 * 119.99934 * 294.24367 * 4 2 1 7 7 N 1.31507 * 120.00141 * 161.62987 * 6 4 2 8 8 Si 1.86804 * 119.99807 * 341.62575 * 6 4 2 9 9 H 1.48494 * 109.46930 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.46793 * 60.00067 * 8 6 4 11 11 H 1.48494 * 109.47176 * 300.00233 * 8 6 4 12 12 N 1.46905 * 109.47096 * 239.99972 * 2 1 3 13 13 C 1.46961 * 110.99672 * 306.04871 * 12 2 1 14 14 C 1.53050 * 109.35799 * 176.81154 * 13 12 2 15 15 H 1.09005 * 109.48919 * 178.36751 * 14 13 12 16 16 C 1.52994 * 109.49143 * 298.40717 * 14 13 12 17 17 N 1.46958 * 109.36572 * 58.39930 * 14 13 12 18 18 C 1.46948 * 110.88383 * 300.67688 * 17 14 13 19 19 C 1.46958 * 110.99953 * 182.24641 * 12 2 1 20 20 H 1.09005 * 109.48352 * 63.22591 * 19 12 2 21 21 C 1.52993 * 109.48764 * 303.15987 * 19 12 2 22 22 H 1.09002 * 109.47525 * 306.43974 * 1 2 3 23 23 H 1.09003 * 109.47181 * 66.43724 * 1 2 3 24 24 H 1.09005 * 109.47423 * 186.43753 * 1 2 3 25 25 H 0.97009 * 119.99989 * 0.52788 * 7 6 4 26 26 H 1.09001 * 109.48701 * 296.77599 * 13 12 2 27 27 H 1.08996 * 109.49268 * 56.84821 * 13 12 2 28 28 H 1.09007 * 109.46901 * 60.00388 * 16 14 13 29 29 H 1.09002 * 109.47149 * 179.97438 * 16 14 13 30 30 H 1.08993 * 109.47468 * 300.00521 * 16 14 13 31 31 H 1.00905 * 110.99654 * 64.54807 * 17 14 13 32 32 H 1.08994 * 109.49532 * 179.28795 * 18 17 14 33 33 H 1.08998 * 109.48903 * 299.33506 * 18 17 14 34 34 H 1.08997 * 109.47542 * 60.00027 * 21 19 12 35 35 H 1.09005 * 109.46720 * 180.02562 * 21 19 12 36 36 H 1.09002 * 109.46917 * 299.99523 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5744 -1.6396 1.1341 6 6 1.7997 -0.1743 2.4793 7 7 1.9015 -0.9318 3.5495 8 14 1.3403 1.6282 2.6511 9 1 1.1441 1.9543 4.0864 10 1 0.0819 1.8912 1.9077 11 1 2.4289 2.4716 2.0956 12 7 2.0197 -0.6925 -1.1995 13 6 1.4340 -2.0360 -1.3078 14 6 1.9058 -2.6918 -2.6077 15 1 1.4959 -3.6995 -2.6763 16 6 1.4259 -1.8633 -3.8010 17 7 3.3739 -2.7582 -2.6151 18 6 3.9595 -1.4148 -2.5067 19 6 3.4877 -0.7589 -1.2068 20 1 3.8292 -1.3495 -0.3567 21 6 4.0630 0.6555 -1.1105 22 1 -0.3634 0.6104 0.8267 23 1 -0.3634 0.4108 -0.9420 24 1 -0.3634 -1.0212 0.1152 25 1 2.1476 -1.8660 3.4609 26 1 1.7523 -2.6410 -0.4588 27 1 0.3467 -1.9594 -1.3130 28 1 1.8366 -0.8559 -3.7326 29 1 1.7625 -2.3304 -4.7266 30 1 0.3371 -1.8130 -3.7940 31 1 3.7123 -3.3606 -1.8797 32 1 5.0468 -1.4913 -2.5015 33 1 3.6415 -0.8099 -3.3558 34 1 3.7253 1.1230 -0.1857 35 1 5.1520 0.6059 -1.1165 36 1 3.7219 1.2452 -1.9614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083118671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -17.290828 kcal Electronic energy + Delta-G solvation = -15604.473226 eV Core-core repulsion = 13315.410514 eV Total energy + Delta-G solvation = -2289.062712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80671 -36.86160 -34.48775 -33.83777 -31.16658 -29.63957 -26.96540 -26.75853 -25.57261 -22.50481 -21.41709 -20.54951 -19.07656 -17.43235 -16.58905 -16.04596 -15.80519 -15.76045 -15.13576 -14.68846 -14.51079 -13.95277 -13.62074 -13.34597 -12.82421 -12.80458 -12.71784 -12.60659 -12.41394 -12.33330 -11.95981 -11.88149 -11.63083 -11.54082 -11.28858 -11.09215 -10.54550 -9.40312 -9.16720 -8.53858 -6.37585 1.42319 1.48738 1.67326 2.45490 3.03861 3.14457 3.36172 4.03527 4.14927 4.22129 4.28023 4.37041 4.51415 4.60089 4.68993 4.75158 4.84896 4.85729 4.90347 4.93746 4.99385 5.08778 5.21587 5.25069 5.31793 5.37570 5.47915 5.50070 5.94263 5.96982 6.04633 6.17569 6.38030 6.47813 6.69544 7.39542 8.60301 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038933 B = 0.011094 C = 0.010651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.005655 B = 2523.363387 C = 2628.175284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.177 3.823 3 H 0.038 0.962 4 C -0.609 4.609 5 H 0.012 0.988 6 C -0.018 4.018 7 N -0.940 5.940 8 Si 1.078 2.922 9 H -0.294 1.294 10 H -0.240 1.240 11 H -0.264 1.264 12 N -0.508 5.508 13 C 0.033 3.967 14 C 0.085 3.915 15 H 0.087 0.913 16 C -0.123 4.123 17 N -0.679 5.679 18 C 0.070 3.930 19 C 0.051 3.949 20 H 0.002 0.998 21 C -0.133 4.133 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.247 0.753 26 H -0.007 1.007 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.333 0.667 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 1.667 -13.412 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.069 3.931 3 H 0.056 0.944 4 C -0.648 4.648 5 H 0.030 0.970 6 C -0.216 4.216 7 N -0.576 5.576 8 Si 0.900 3.100 9 H -0.220 1.220 10 H -0.164 1.164 11 H -0.190 1.190 12 N -0.232 5.232 13 C -0.097 4.097 14 C -0.025 4.025 15 H 0.105 0.895 16 C -0.181 4.181 17 N -0.306 5.306 18 C -0.060 4.060 19 C -0.059 4.059 20 H 0.020 0.980 21 C -0.191 4.191 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.011 0.989 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.001 3.060 -13.456 13.800 hybrid contribution 0.632 -2.087 1.582 2.694 sum 0.632 0.973 -11.875 11.931 Atomic orbital electron populations 1.22148 0.97175 1.00178 1.00427 1.19546 0.92423 0.94555 0.86610 0.94401 1.22562 1.39226 1.08657 0.94345 0.96978 1.27096 0.93845 1.08651 0.92057 1.71005 1.46338 1.07485 1.32747 0.83666 0.79107 0.71100 0.76122 1.22017 1.16415 1.18954 1.62610 1.05893 1.16414 1.38303 1.22683 1.00108 0.90343 0.96543 1.21721 0.87781 0.99177 0.93813 0.89479 1.21616 1.00575 0.99957 0.95953 1.60940 1.06775 1.11530 1.51382 1.22186 0.99032 0.89225 0.95574 1.22210 0.88917 0.97747 0.97042 0.97955 1.21682 1.00278 0.95509 1.01595 0.93303 0.92230 0.94770 0.94376 0.98859 0.90988 0.92268 0.91802 0.92135 0.85054 0.89705 0.89218 0.94503 0.91382 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 8.20 71.98 0.59 -5.39 16 2 C 0.18 8.10 1.51 44.17 0.07 8.17 16 3 H 0.04 1.75 5.01 -2.39 -0.01 1.74 16 4 C -0.61 -33.82 7.34 25.60 0.19 -33.63 16 5 H 0.01 0.76 6.08 -2.91 -0.02 0.74 16 6 C -0.02 -1.04 5.34 84.66 0.45 -0.59 16 7 N -0.94 -59.30 13.70 21.45 0.29 -59.01 16 8 Si 1.08 49.60 26.47 68.60 1.82 51.42 16 9 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.24 -9.74 5.51 99.48 0.55 -9.19 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.51 -20.15 3.89 -849.76 -3.30 -23.45 16 13 C 0.03 1.28 4.31 86.31 0.37 1.65 16 14 C 0.09 2.56 3.69 44.92 0.17 2.72 16 15 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 16 C -0.12 -3.20 8.84 71.98 0.64 -2.57 16 17 N -0.68 -20.07 6.70 -491.16 -3.29 -23.36 16 18 C 0.07 2.06 5.62 86.31 0.49 2.55 16 19 C 0.05 1.93 2.15 44.92 0.10 2.02 16 20 H 0.00 0.11 6.56 -2.38 -0.02 0.10 16 21 C -0.13 -4.54 8.86 71.98 0.64 -3.91 16 22 H 0.05 2.08 4.89 -2.39 -0.01 2.07 16 23 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.03 1.48 6.65 -2.38 -0.02 1.46 16 25 H 0.25 16.01 8.72 -92.70 -0.81 15.20 16 26 H -0.01 -0.32 6.84 -2.39 -0.02 -0.34 16 27 H 0.07 2.72 6.17 -2.39 -0.01 2.71 16 28 H 0.06 1.66 5.94 -2.38 -0.01 1.65 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.33 10.16 8.89 -89.69 -0.80 9.37 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.09 2.51 6.35 -2.39 -0.02 2.49 16 34 H 0.04 1.47 6.39 -2.39 -0.02 1.45 16 35 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -63.17 261.84 -0.72 -63.90 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.07 Total: 19.48 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.69 Total: -28.97 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -6.30 Total: -105.82 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.82 Total: 51.42 kcal Total: -63.17 -0.72 -63.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.604 kcal (2) G-P(sol) polarization free energy of solvation -63.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds