Wall clock time and date at job start Mon Mar 30 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46963 * 110.99439 * 306.04269 * 12 2 1 14 14 C 1.53049 * 109.36177 * 183.18786 * 13 12 2 15 15 H 1.08999 * 109.49240 * 61.58597 * 14 13 12 16 16 C 1.53000 * 109.49172 * 181.63387 * 14 13 12 17 17 N 1.46965 * 109.36443 * 301.60192 * 14 13 12 18 18 C 1.46953 * 110.88318 * 59.32044 * 17 14 13 19 19 C 1.46958 * 111.00190 * 69.84086 * 12 2 1 20 20 H 1.09000 * 109.48886 * 296.78626 * 19 12 2 21 21 C 1.53000 * 109.48530 * 56.84565 * 19 12 2 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.48944 * 303.15384 * 13 12 2 27 27 H 1.09002 * 109.48502 * 63.22800 * 13 12 2 28 28 H 1.08998 * 109.46729 * 59.99768 * 16 14 13 29 29 H 1.08991 * 109.47232 * 179.97438 * 16 14 13 30 30 H 1.09003 * 109.47021 * 300.00142 * 16 14 13 31 31 H 1.00901 * 110.99875 * 183.19446 * 17 14 13 32 32 H 1.09005 * 109.48924 * 60.64299 * 18 17 14 33 33 H 1.09001 * 109.49203 * 180.69196 * 18 17 14 34 34 H 1.09005 * 109.46828 * 60.00057 * 21 19 12 35 35 H 1.08997 * 109.46900 * 179.97438 * 21 19 12 36 36 H 1.09001 * 109.47329 * 300.00226 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 1.4341 -2.0359 -1.3079 14 6 2.0284 -2.7520 -2.5231 15 1 3.1051 -2.8592 -2.3914 16 6 1.3908 -4.1358 -2.6625 17 7 1.7582 -1.9635 -3.7335 18 6 2.3438 -0.6200 -3.6251 19 6 1.7495 0.0960 -2.4100 20 1 0.6728 0.2029 -2.5415 21 6 2.3871 1.4798 -2.2706 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7096 1.1617 3.4844 26 1 1.6584 -2.6043 -0.4054 27 1 0.3538 -1.9532 -1.4271 28 1 0.3143 -4.0281 -2.7949 29 1 1.8139 -4.6452 -3.5281 30 1 1.5897 -4.7196 -1.7637 31 1 2.0945 -2.4392 -4.5574 32 1 3.4241 -0.7027 -3.5060 33 1 2.1198 -0.0517 -4.5279 34 1 3.4639 1.3722 -2.1400 35 1 2.1869 2.0642 -3.1686 36 1 1.9651 1.9887 -1.4039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083118672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:34 Heat of formation + Delta-G solvation = 4.424391 kcal Electronic energy + Delta-G solvation = -15303.914680 eV Core-core repulsion = 13015.793610 eV Total energy + Delta-G solvation = -2288.121070 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.92195 -35.16572 -33.07499 -31.90988 -29.24959 -28.15049 -25.18791 -24.46743 -24.41413 -21.17725 -20.06824 -18.26734 -16.22386 -15.83023 -14.82853 -14.76437 -14.60354 -13.71414 -13.39432 -13.11157 -12.54266 -12.27092 -12.10695 -11.53794 -11.34823 -11.30579 -11.17266 -11.01245 -10.75428 -10.62942 -10.40148 -10.25557 -10.13950 -9.90983 -9.39513 -8.79290 -8.30975 -8.12607 -7.05059 -5.96954 -4.00085 3.34326 3.38541 3.41493 4.43886 4.50093 4.94786 5.33394 5.34018 5.44615 5.59342 5.77282 5.80135 5.86539 6.05775 6.08526 6.12965 6.22446 6.33653 6.47614 6.54731 6.69072 6.74317 6.85611 6.90840 6.94095 7.22410 7.33352 7.58374 7.67518 7.78012 7.90079 8.22371 8.45898 8.67405 9.05599 9.64418 11.10047 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033618 B = 0.010372 C = 0.008777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.681051 B = 2698.837502 C = 3189.508832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.207 3.793 3 H 0.047 0.953 4 C -0.498 4.498 5 H 0.060 0.940 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.529 5.529 13 C 0.071 3.929 14 C 0.081 3.919 15 H 0.040 0.960 16 C -0.141 4.141 17 N -0.688 5.688 18 C 0.068 3.932 19 C 0.079 3.921 20 H 0.039 0.961 21 C -0.143 4.143 22 H 0.086 0.914 23 H 0.029 0.971 24 H 0.007 0.993 25 H 0.260 0.740 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.331 0.669 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -4.058 -9.906 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.101 3.899 3 H 0.065 0.935 4 C -0.536 4.536 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.254 5.254 13 C -0.057 4.057 14 C -0.029 4.029 15 H 0.058 0.942 16 C -0.200 4.200 17 N -0.319 5.319 18 C -0.062 4.062 19 C -0.030 4.030 20 H 0.057 0.943 21 C -0.201 4.201 22 H 0.105 0.895 23 H 0.048 0.952 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.169 -3.781 -9.490 10.282 hybrid contribution 0.319 -0.535 0.677 0.920 sum 1.489 -4.315 -8.813 9.925 Atomic orbital electron populations 1.22382 1.00963 0.99309 1.00335 1.19376 0.89695 0.94983 0.85841 0.93520 1.21080 1.30401 1.12392 0.89761 0.92225 1.24916 0.95299 0.95170 0.98906 1.69875 1.37121 1.23068 1.23395 0.86610 0.79180 0.79635 0.82247 1.20316 1.21434 1.20407 1.62510 1.58657 1.01899 1.02307 1.22014 0.96498 0.91247 0.95964 1.21648 0.97862 0.92620 0.90770 0.94201 1.21760 1.01467 0.95636 1.01101 1.60562 1.63181 1.03707 1.04483 1.22009 0.96605 0.89653 0.97922 1.21531 0.97563 0.93197 0.90732 0.94284 1.21846 1.01390 0.95688 1.01189 0.89504 0.95177 0.97435 0.93022 0.90000 0.94819 0.92123 0.93339 0.92093 0.85211 0.94888 0.91502 0.92398 0.93538 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.21 37.16 0.31 -3.94 16 2 C 0.21 5.24 2.07 -68.86 -0.14 5.09 16 3 H 0.05 1.28 5.74 -51.93 -0.30 0.98 16 4 C -0.50 -13.70 7.92 -34.44 -0.27 -13.98 16 5 H 0.06 1.65 7.12 -52.49 -0.37 1.28 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.61 4.47 -219.94 -0.98 -12.60 16 13 C 0.07 1.45 4.05 -3.76 -0.02 1.44 16 14 C 0.08 1.34 3.20 -67.65 -0.22 1.12 16 15 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 16 C -0.14 -1.93 9.46 37.16 0.35 -1.58 16 17 N -0.69 -10.62 6.55 -106.58 -0.70 -11.32 16 18 C 0.07 1.08 6.00 -3.77 -0.02 1.06 16 19 C 0.08 1.51 2.29 -67.66 -0.15 1.35 16 20 H 0.04 0.81 6.75 -51.93 -0.35 0.46 16 21 C -0.14 -2.53 8.89 37.16 0.33 -2.20 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 23 H 0.03 0.73 6.40 -51.93 -0.33 0.40 16 24 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.08 1.79 6.78 -51.93 -0.35 1.44 16 27 H 0.03 0.72 6.41 -51.93 -0.33 0.39 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.33 4.23 8.83 -39.29 -0.35 3.88 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.34 6.15 -51.93 -0.32 1.02 16 LS Contribution 271.04 15.07 4.08 4.08 Total: -1.00 -28.39 271.04 -7.81 -36.20 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.89 Total: 2.25 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -1.05 Total: -48.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.39 -7.81 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.626 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds