Wall clock time and date at job start Mon Mar 30 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46963 * 110.99439 * 306.04269 * 12 2 1 14 14 C 1.53049 * 109.36177 * 183.18786 * 13 12 2 15 15 H 1.08999 * 109.49240 * 61.58597 * 14 13 12 16 16 C 1.53000 * 109.49172 * 181.63387 * 14 13 12 17 17 N 1.46965 * 109.36443 * 301.60192 * 14 13 12 18 18 C 1.46953 * 110.88318 * 59.32044 * 17 14 13 19 19 C 1.46958 * 111.00190 * 69.84086 * 12 2 1 20 20 H 1.09000 * 109.48886 * 296.78626 * 19 12 2 21 21 C 1.53000 * 109.48530 * 56.84565 * 19 12 2 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.48944 * 303.15384 * 13 12 2 27 27 H 1.09002 * 109.48502 * 63.22800 * 13 12 2 28 28 H 1.08998 * 109.46729 * 59.99768 * 16 14 13 29 29 H 1.08991 * 109.47232 * 179.97438 * 16 14 13 30 30 H 1.09003 * 109.47021 * 300.00142 * 16 14 13 31 31 H 1.00901 * 110.99875 * 183.19446 * 17 14 13 32 32 H 1.09005 * 109.48924 * 60.64299 * 18 17 14 33 33 H 1.09001 * 109.49203 * 180.69196 * 18 17 14 34 34 H 1.09005 * 109.46828 * 60.00057 * 21 19 12 35 35 H 1.08997 * 109.46900 * 179.97438 * 21 19 12 36 36 H 1.09001 * 109.47329 * 300.00226 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 1.4341 -2.0359 -1.3079 14 6 2.0284 -2.7520 -2.5231 15 1 3.1051 -2.8592 -2.3914 16 6 1.3908 -4.1358 -2.6625 17 7 1.7582 -1.9635 -3.7335 18 6 2.3438 -0.6200 -3.6251 19 6 1.7495 0.0960 -2.4100 20 1 0.6728 0.2029 -2.5415 21 6 2.3871 1.4798 -2.2706 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7096 1.1617 3.4844 26 1 1.6584 -2.6043 -0.4054 27 1 0.3538 -1.9532 -1.4271 28 1 0.3143 -4.0281 -2.7949 29 1 1.8139 -4.6452 -3.5281 30 1 1.5897 -4.7196 -1.7637 31 1 2.0945 -2.4392 -4.5574 32 1 3.4241 -0.7027 -3.5060 33 1 2.1198 -0.0517 -4.5279 34 1 3.4639 1.3722 -2.1400 35 1 2.1869 2.0642 -3.1686 36 1 1.9651 1.9887 -1.4039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083118672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:34 Heat of formation + Delta-G solvation = -16.029966 kcal Electronic energy + Delta-G solvation = -15304.801647 eV Core-core repulsion = 13015.793610 eV Total energy + Delta-G solvation = -2289.008037 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47950 -36.79688 -34.77095 -33.63683 -30.80984 -29.80826 -27.31149 -26.06676 -25.77529 -22.81884 -21.63319 -19.90554 -18.27786 -17.28272 -16.61970 -16.32081 -16.12878 -15.41586 -14.80690 -14.77218 -14.25681 -13.93475 -13.51457 -13.21788 -12.95240 -12.87712 -12.69695 -12.62157 -12.50930 -12.31657 -12.19380 -12.05459 -11.81823 -11.60073 -11.06304 -10.84011 -10.41902 -9.39316 -8.82000 -8.09603 -6.19991 1.41908 1.43398 1.51019 2.42955 3.18811 3.27685 3.33530 3.99613 4.07181 4.27735 4.39019 4.41512 4.47480 4.69347 4.79771 4.81091 4.83885 4.89491 4.92168 4.99655 5.04894 5.12348 5.14570 5.29100 5.36800 5.41541 5.55605 5.71249 5.80522 6.05597 6.25425 6.48635 6.63627 6.80224 6.93403 7.48714 8.96271 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033618 B = 0.010372 C = 0.008777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.681051 B = 2698.837502 C = 3189.508832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.212 3.788 3 H 0.022 0.978 4 C -0.514 4.514 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.538 5.538 13 C 0.074 3.926 14 C 0.088 3.912 15 H 0.035 0.965 16 C -0.134 4.134 17 N -0.689 5.689 18 C 0.074 3.926 19 C 0.074 3.926 20 H 0.023 0.977 21 C -0.137 4.137 22 H 0.061 0.939 23 H 0.026 0.974 24 H 0.018 0.982 25 H 0.261 0.739 26 H 0.059 0.941 27 H 0.018 0.982 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.353 0.647 32 H 0.033 0.967 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -5.092 -11.309 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.105 3.895 3 H 0.040 0.960 4 C -0.552 4.552 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.262 5.262 13 C -0.055 4.055 14 C -0.022 4.022 15 H 0.053 0.947 16 C -0.192 4.192 17 N -0.322 5.322 18 C -0.055 4.055 19 C -0.035 4.035 20 H 0.041 0.959 21 C -0.195 4.195 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.172 0.828 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.810 -4.830 -10.924 12.080 hybrid contribution 0.110 -0.181 1.069 1.090 sum 1.919 -5.011 -9.855 11.221 Atomic orbital electron populations 1.22169 1.00942 0.98702 0.99526 1.19131 0.89528 0.93835 0.87043 0.96008 1.21336 1.30490 1.12346 0.91070 0.92966 1.25677 0.95450 0.95850 1.01745 1.70003 1.37910 1.24175 1.23989 0.85624 0.78698 0.78689 0.78677 1.19838 1.20967 1.19729 1.62457 1.58633 1.02715 1.02407 1.21986 0.95742 0.90579 0.97165 1.21527 0.97379 0.93684 0.89623 0.94713 1.21706 1.01091 0.93928 1.02498 1.60491 1.63341 1.03570 1.04790 1.21954 0.96254 0.90007 0.97296 1.21692 0.97019 0.93993 0.90794 0.95916 1.21782 1.00849 0.95231 1.01591 0.92044 0.95519 0.96313 0.93012 0.92275 0.96347 0.92498 0.90515 0.91948 0.82780 0.94840 0.88510 0.92525 0.90059 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.88 8.21 71.98 0.59 -7.29 16 2 C 0.21 11.01 2.07 44.17 0.09 11.10 16 3 H 0.02 1.25 5.74 -2.39 -0.01 1.24 16 4 C -0.51 -28.91 7.92 25.60 0.20 -28.71 16 5 H 0.05 2.95 7.12 -2.91 -0.02 2.93 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -53.75 11.32 21.45 0.24 -53.50 16 8 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.54 -23.77 4.47 -849.76 -3.80 -27.56 16 13 C 0.07 3.01 4.05 86.31 0.35 3.36 16 14 C 0.09 2.76 3.20 44.92 0.14 2.90 16 15 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 16 C -0.13 -3.33 9.46 71.98 0.68 -2.65 16 17 N -0.69 -19.26 6.55 -491.12 -3.21 -22.48 16 18 C 0.07 2.17 6.00 86.31 0.52 2.69 16 19 C 0.07 2.75 2.29 44.92 0.10 2.86 16 20 H 0.02 0.93 6.75 -2.39 -0.02 0.91 16 21 C -0.14 -4.73 8.89 71.98 0.64 -4.09 16 22 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 23 H 0.03 1.32 6.40 -2.39 -0.02 1.31 16 24 H 0.02 0.86 6.75 -2.38 -0.02 0.85 16 25 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.06 2.63 6.78 -2.39 -0.02 2.62 16 27 H 0.02 0.80 6.41 -2.39 -0.02 0.78 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.35 7.60 8.83 -89.69 -0.79 6.81 16 32 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.04 1.55 6.15 -2.39 -0.01 1.54 16 Total: -1.00 -61.54 271.04 -0.71 -62.25 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.26 Total: 13.63 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 3.77 Total: -18.76 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -6.77 Total: -103.54 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -61.54 -0.71 -62.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.221 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds